Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc04_g04540 Coffea canephora HOM05D006506 ORTHO05D007809 1.7e-182 642.5 324 100.0
Dinv38132 Davidia involucrata HOM05D006506 ORTHO05D007809 1.3e-153 546.6 328 84.1
Actinidia15748 Actinidia chinensis HOM05D006506 ORTHO05D007809 1.9e-152 542.7 327 83.8
CSS0043074 Camellia sinensis var. sinensis HOM05D006506 ORTHO05D007809 3.5e-151 538.5 327 82.3
CSS0005655 Camellia sinensis var. sinensis HOM05D006506 ORTHO05D007809 6.0e-151 537.7 327 82.3
vmacro19011 Vaccinium macrocarpon HOM05D006506 ORTHO05D007809 7.9e-151 537.3 324 81.5
Rhsim08G0211600 Rhododendron simsii HOM05D006506 ORTHO05D007809 1.0e-150 537.0 327 82.3
DCAR_021353 Daucus carota HOM05D006506 ORTHO05D007809 1.9e-149 532.7 326 81.3
ECA232G3059 Erigeron canadensis HOM05D006506 ORTHO05D007809 3.3e-149 531.9 325 81.5
Peaxi162Scf00553g00510 Petunia axillaris HOM05D006506 ORTHO05D007809 4.3e-149 531.6 328 80.5
Lsat_1_v5_gn_4_87520 Lactuca sativa HOM05D006506 ORTHO05D007809 1.6e-148 529.6 325 81.5
HanXRQChr16g0500351 Helianthus annuus HOM05D006506 ORTHO05D007809 2.1e-148 529.3 325 80.3
Nitab4.5_0005461g0020 Nicotiana tabacum HOM05D006506 ORTHO05D007809 2.1e-148 529.3 328 79.9
Nitab4.5_0010868g0010 Nicotiana tabacum HOM05D006506 ORTHO05D007809 8.2e-148 527.3 328 79.6
PGSC0003DMG400014148 Solanum tuberosum HOM05D006506 ORTHO05D007809 2.2e-145 519.2 328 78.0
GSVIVG01017366001 Vitis vinifera HOM05D006506 ORTHO05D007809 8.4e-145 517.3 323 77.7
Sopen03g036430 Solanum pennellii HOM05D006506 ORTHO05D007809 2.7e-143 512.3 328 76.8
Duzib160G0645 Durio zibethinus HOM05D006506 ORTHO05D007809 1.3e-142 510.0 324 77.5
CAN.G407.9 Capsicum annuum HOM05D006506 ORTHO05D007809 3.0e-142 508.8 328 77.7
Duzib160G0598 Durio zibethinus HOM05D006506 ORTHO05D007809 3.9e-142 508.4 324 77.5
COL.COLO4_11906 Corchorus olitorius HOM05D006506 ORTHO05D007809 5.1e-142 508.1 324 78.1
Oeu027841.1 Olea europaea HOM05D006506 ORTHO05D007809 1.1e-141 506.9 325 78.2
Thecc.06G030600 Theobroma cacao HOM05D006506 ORTHO05D007809 1.5e-141 506.5 321 77.9
MD17G1214300 Malus domestica HOM05D006506 ORTHO05D007809 1.9e-141 506.1 324 77.2
Haze_13452 Corylus avellana HOM05D006506 ORTHO05D007809 9.7e-141 503.8 324 76.2
Prupe.3G090200 Prunus persica HOM05D006506 ORTHO05D007809 9.7e-141 503.8 324 76.9
Cfa001948 Carpinus fangiana HOM05D006506 ORTHO05D007809 2.2e-140 502.7 324 76.2
CiPaw.01G249400 Carya illinoinensis HOM05D006506 ORTHO05D007809 1.8e-139 499.6 324 76.2
CsaV3_7G032300 Cucumis sativus L. HOM05D006506 ORTHO05D007809 4.1e-139 498.4 324 76.2
Cpa.g.sc67.28 Carica papaya HOM05D006506 ORTHO05D007809 1.2e-138 496.9 324 75.6
MELO3C023430.2 Cucumis melo HOM05D006506 ORTHO05D007809 2.6e-138 495.7 324 76.2
Gohir.D06G120300 Gossypium hirsutum HOM05D006506 ORTHO05D007809 3.4e-138 495.4 324 75.9
CANSAT56G2592 Cannabis sativa HOM05D006506 ORTHO05D007809 7.7e-138 494.2 324 75.9
Gorai.010G138400 Gossypium raimondii HOM05D006506 ORTHO05D007809 7.7e-138 494.2 324 75.6
TWI75G0153 Tripterygium wilfordii HOM05D006506 ORTHO05D007809 7.7e-138 494.2 324 74.7
Sed0005275 Sechium edule HOM05D006506 ORTHO05D007809 1.3e-137 493.4 324 75.0
Gohir.A06G107700 Gossypium hirsutum HOM05D006506 ORTHO05D007809 2.2e-137 492.7 324 75.3
TAR371G0436 Trochodendron aralioides HOM05D006506 ORTHO05D007809 3.8e-137 491.9 324 73.8
SHI11239 Sapria himalayana HOM05D006506 ORTHO05D007809 1.1e-136 490.3 322 74.2
MBI06_g17213_MAGBIO Magnolia biondii HOM05D006506 ORTHO05D007809 1.9e-136 489.6 321 76.0
MSTRG.11150 Avicennia marina HOM05D006506 ORTHO05D007809 1.2e-135 486.9 324 75.0
Potri.001G201700 Populus trichocarpa HOM05D006506 ORTHO05D007809 1.6e-135 486.5 325 75.4
Ciclev10026100m.g Citrus clementina HOM05D006506 ORTHO05D007809 2.1e-135 486.1 322 74.8
Sabra01G0159300 Salix brachista HOM05D006506 ORTHO05D007809 3.9e-134 481.9 326 74.2
Lj2g0016250 Lotus japonicus HOM05D006506 ORTHO05D007809 8.8e-134 480.7 324 73.5
PSO210G7208 Papaver somniferum HOM05D006506 ORTHO05D007809 1.1e-133 480.3 324 72.5
PGR031G2298 Punica granatum HOM05D006506 ORTHO05D007809 7.4e-133 477.6 324 74.4
CARHR042650 Cardamine hirsuta HOM05D006506 ORTHO05D007809 9.7e-133 477.2 324 72.2
Carub.0001s4149 Capsella rubella HOM05D006506 ORTHO05D007809 1.3e-132 476.9 324 72.2
FAN02G0099 Fragaria x ananassa HOM05D006506 ORTHO05D007809 1.3e-132 476.9 324 72.8
FAN14G4998 Fragaria x ananassa HOM05D000001 ORTHO05D007809 1.3e-132 476.9 324 72.8
AL1G60780 Arabidopsis lyrata HOM05D006506 ORTHO05D007809 1.7e-132 476.5 324 72.2
A05p18940 Brassica napus HOM05D006506 ORTHO05D007809 1.7e-132 476.5 324 71.9
BcaB02g10986 Brassica carinata HOM05D006506 ORTHO05D007809 2.2e-132 476.1 324 71.9
BraA05t20791Z Brassica rapa HOM05D006506 ORTHO05D007809 2.2e-132 476.1 324 71.9
FAN05G2665 Fragaria x ananassa HOM05D000001 ORTHO05D007809 2.8e-132 475.7 324 72.8
FAN09G0903 Fragaria x ananassa HOM05D006506 ORTHO05D007809 2.8e-132 475.7 324 72.8
RcHm_v2.0_Chr2g0134931 Rosa chinensis HOM05D006506 ORTHO05D007809 2.8e-132 475.7 324 72.5
Solyc03g117530.1 Solanum lycopersicum HOM05D006506 ORTHO05D007809 2.8e-132 475.7 303 77.2
AT1G52530 Arabidopsis thaliana HOM05D006506 ORTHO05D007809 3.7e-132 475.3 324 71.6
Sp1g39080 Schrenkiella parvula HOM05D006506 ORTHO05D007809 3.7e-132 475.3 324 71.9
Aa31LG10G2470 Aethionema arabicum HOM05D006506 ORTHO05D007809 4.8e-132 474.9 324 71.6
FvH4_6g29440 Fragaria vesca HOM05D006506 ORTHO05D007809 4.8e-132 474.9 324 72.5
BcaC08g44001 Brassica carinata HOM05D006506 ORTHO05D007809 1.4e-131 473.4 324 71.9
C06p14060 Brassica napus HOM05D006506 ORTHO05D007809 1.8e-131 473.0 324 71.9
BolC6t36584H Brassica oleracea HOM05D006506 ORTHO05D007809 1.8e-131 473.0 324 71.9
Duzib235G0689 Durio zibethinus HOM05D006506 ORTHO05D007809 3.1e-131 472.2 326 72.7
Thhalv10011665m.g Eutrema salsugineum HOM05D006506 ORTHO05D007809 4.1e-131 471.9 324 71.0
SGA_v2.0_scaffold37G14756 Striga asiatica HOM05D006506 ORTHO05D007809 6.9e-131 471.1 324 72.5
arahy.Tifrunner.gnm1.ann1.9QS0XN Arachis hypogaea HOM05D006506 ORTHO05D007809 9.1e-131 470.7 324 71.6
arahy.Tifrunner.gnm1.ann1.SP1H5F Arachis hypogaea HOM05D006506 ORTHO05D007809 5.9e-130 468.0 324 71.0
Ca_04862_v3 Cicer arietinum L. HOM05D006506 ORTHO05D007809 7.7e-130 467.6 324 71.9
Phvul.004G032600 Phaseolus vulgaris HOM05D006506 ORTHO05D007809 5.5e-128 461.5 324 70.4
Psat1g070040 Pisum sativum HOM05D006506 ORTHO05D007809 5.5e-128 461.5 324 70.7
Lalb_Chr06g0175141 Lupinus albus HOM05D006506 ORTHO05D007809 3.6e-127 458.8 326 69.6
TPR.G16552 Trifolium pratense HOM05D006506 ORTHO05D007809 6.1e-127 458.0 324 70.1
Ciclev10027407m.g Citrus clementina HOM05D006506 ORTHO05D007809 2.3e-126 456.1 322 71.7
Medtr1g082730 Medicago truncatula HOM05D006506 ORTHO05D007809 2.3e-126 456.1 324 70.1
VMungo0464G1487 Vigna mungo HOM05D006506 ORTHO05D007809 2.0e-125 453.0 324 69.8
Migut.I00752 Erythranthe guttata HOM05D006506 ORTHO05D007809 2.6e-125 452.6 324 72.5
Glyma.13G059800 Glycine max HOM05D006506 ORTHO05D007809 4.4e-125 451.8 324 69.4
unitig_62.g23595 Utricularia gibba HOM05D006506 ORTHO05D007809 8.2e-124 447.6 324 69.1
HPP92_007331 Vanilla planifolia HOM05D006506 ORTHO05D007809 9.1e-123 444.1 321 67.6
SalBow2G1795 Salvia bowleyana HOM05D006506 ORTHO05D007809 2.6e-122 442.6 324 67.3
Ciclev10026188m.g Citrus clementina HOM05D006506 ORTHO05D007809 1.0e-121 440.7 322 69.9
ATR0605G102 Amborella trichopoda HOM05D006506 ORTHO05D007809 6.5e-121 438.0 322 66.5
Aqoxy7G02198 Aquilegia oxysepala HOM05D006506 ORTHO05D007809 1.6e-119 433.3 297 69.7
Ciclev10027493m.g Citrus clementina HOM05D006506 ORTHO05D007809 2.0e-117 426.4 303 71.9
Ciclev10027064m.g Citrus clementina HOM05D006506 ORTHO05D007809 6.3e-116 421.4 303 70.6
SEGI_33428 Sequoiadendron giganteum HOM05D006506 ORTHO05D007809 5.9e-114 414.8 323 62.8
Ciclev10027055m.g Citrus clementina HOM05D006506 ORTHO05D007809 1.3e-113 413.7 309 70.2
Os04g0528400 Oryza sativa ssp. japonica HOM05D006506 ORTHO05D007809 3.8e-113 412.1 329 60.8
AUR62030047 Chenopodium quinoa HOM05D006506 ORTHO05D007809 8.8e-110 401.0 322 62.1
Ah.08g214330 Amaranthus hybridus HOM05D006506 ORTHO05D007809 4.1e-107 392.1 322 61.2
HPP92_007333 Vanilla planifolia HOM05D006506 ORTHO05D007809 9.1e-107 391.0 324 62.3
Manes.11G058300 Manihot esculenta HOM05D006506 ORTHO05D007809 3.5e-106 389.0 261 73.6
EL10Ac7g17638 Beta vulgaris HOM05D006506 ORTHO05D007809 4.2e-104 382.1 315 61.3
AagrBONN_evm.TU.Sc2ySwM_117.4079 Anthoceros agrestis HOM05D006506 ORTHO05D007809 3.6e-103 379.0 319 56.1
Pp3c1_24880 Physcomitrium patens HOM05D006506 ORTHO05D007809 6.8e-102 374.8 321 55.5
THA.LOC104818016 Tarenaya hassleriana HOM05D006506 ORTHO05D007809 6.3e-100 368.2 262 70.6
Lj9E498T1 Lonicera japonica HOM05D006506 ORTHO05D007809 2.9e-97 359.4 214 85.0
Mapoly0090s0026 Marchantia polymorpha HOM05D006506 ORTHO05D007809 1.9e-96 356.7 324 54.0
AUR62002633 Chenopodium quinoa HOM05D006506 ORTHO05D007809 9.5e-96 354.4 297 59.9
Zm00001eb427100 Zea mays HOM05D006506 ORTHO05D007809 2.3e-94 349.7 331 51.7
Ciclev10027054m.g Citrus clementina HOM05D006506 ORTHO05D007809 3.2e-91 339.3 260 68.1
Atru.chr1.2888 Acer truncatum HOM05D006506 ORTHO05D007809 4.1e-91 339.0 275 64.0
SMO115G0207 Selaginella moellendorffii HOM05D006506 ORTHO05D007809 8.6e-89 331.3 320 49.7
CDE11G1201 Ceratophyllum demersum HOM05D006506 ORTHO05D007809 1.1e-83 314.3 291 58.4
CBR_g8656 Chara braunii HOM05D006506 ORTHO05D007809 1.2e-82 310.8 326 48.5
Sc05g0005410 Simmondsia chinensis HOM05D006506 ORTHO05D007809 4.6e-82 308.9 289 56.4
Ciclev10027056m.g Citrus clementina HOM05D006506 ORTHO05D007809 3.1e-78 296.2 309 53.7
CDE08G0717 Ceratophyllum demersum HOM05D006506 ORTHO05D007809 1.0e-73 281.2 218 65.6
Prupe.2G072500 Prunus persica HOM05D006506 ORTHO05D007809 4.4e-61 239.2 301 47.8
TPR.G26194 Trifolium pratense HOM05D002479 ORTHO05D007809 1.9e-43 180.6 129 68.2
Solyc04g026070.1 Solanum lycopersicum HOM05D006506 ORTHO05D007809 2.3e-41 173.7 121 68.6
Cre12.g524350 Chlamydomonas reinhardtii HOM05D006506 ORTHO05D007809 5.5e-35 152.5 273 35.9
Ciclev10027644m.g Citrus clementina HOM05D006506 ORTHO05D007809 2.1e-31 140.6 103 64.1
ATR0068G037 Amborella trichopoda HOM05D006506 ORTHO05D007809 2.0e-29 134.0 120 56.7
Solyc08g044480.1 Solanum lycopersicum HOM05D006506 ORTHO05D007809 2.6e-29 133.7 115 58.3
SMO018G0003 Selaginella moellendorffii HOM05D006506 ORTHO05D007809 8.4e-28 128.6 95 62.1
PRCOL_00003381 Prasinoderma coloniale HOM05D006506 ORTHO05D007809 2.3e-25 120.6 369 29.8
Ciclev10026990m.g Citrus clementina HOM05D006506 ORTHO05D007809 1.9e-24 117.5 103 58.3
Nn4g24996 Nelumbo nucifera HOM05D006506 ORTHO05D007809 4.3e-24 116.3 62 83.9
MCO05G139 Micromonas commoda HOM05D006506 ORTHO05D007809 3.7e-23 113.2 330 27.6
MBI08_g32097_MAGBIO Magnolia biondii HOM05D006506 ORTHO05D007809 3.2e-19 100.1 72 68.1
Mapoly1721s0002 Marchantia polymorpha HOM05D006506 ORTHO05D007809 1.1e-14 85.1 62 62.9


User provided reference genes

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