Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc04_g04410 Coffea canephora HOM05D005464 ORTHO05D006803 1.1e-144 516.5 258 100.0
Oeu045134.1 Olea europaea HOM05D005464 ORTHO05D006803 9.6e-67 257.7 193 68.4
MSTRG.22747 Avicennia marina HOM05D005464 ORTHO05D006803 4.5e-64 248.8 281 49.8
Dinv30606 Davidia involucrata HOM05D005464 ORTHO05D006803 9.9e-64 247.7 270 53.3
Migut.I00762 Erythranthe guttata HOM05D005464 ORTHO05D006803 3.8e-63 245.7 193 62.2
CAN.G1503.8 Capsicum annuum HOM05D005464 ORTHO05D006803 5.5e-62 241.9 281 50.9
Rhsim12G0191100 Rhododendron simsii HOM05D005464 ORTHO05D006803 7.1e-62 241.5 271 52.8
Peaxi162Scf00207g00638 Petunia axillaris HOM05D005464 ORTHO05D006803 9.3e-62 241.1 278 49.6
Nitab4.5_0000373g0080 Nicotiana tabacum HOM05D005464 ORTHO05D006803 4.6e-61 238.8 283 51.2
Actinidia15983 Actinidia chinensis HOM05D005464 ORTHO05D006803 1.8e-60 236.9 278 51.4
Sopen06g025430 Solanum pennellii HOM05D005464 ORTHO05D006803 9.6e-59 231.1 284 50.4
Solyc06g068160.3 Solanum lycopersicum HOM05D005464 ORTHO05D006803 2.1e-58 229.9 284 50.0
Nitab4.5_0006769g0010 Nicotiana tabacum HOM05D005464 ORTHO05D006803 6.2e-58 228.4 283 49.8
Nn2g12091 Nelumbo nucifera HOM05D000467 ORTHO05D000379 8.1e-58 228.0 190 60.5
unitig_0.g1114 Utricularia gibba HOM05D005464 ORTHO05D006803 3.1e-57 226.1 190 58.9
PGSC0003DMG400028509 Solanum tuberosum HOM05D005464 ORTHO05D006803 6.9e-57 224.9 202 59.9
SGA_v2.0_scaffold5G02698 Striga asiatica HOM05D005464 ORTHO05D006803 9.0e-57 224.6 193 57.5
GSVIVG01017342001 Vitis vinifera HOM05D005464 ORTHO05D006803 4.5e-56 222.2 277 48.4
Nn8g39510 Nelumbo nucifera HOM05D005464 ORTHO05D006803 3.5e-53 212.6 197 56.9
TWI12G0099 Tripterygium wilfordii HOM05D005464 ORTHO05D006803 5.1e-52 208.8 286 45.5
Thecc.06G025100 Theobroma cacao HOM05D000467 ORTHO05D000379 6.7e-52 208.4 280 46.1
COL.COLO4_11947 Corchorus olitorius HOM05D005464 ORTHO05D006803 1.1e-51 207.6 281 46.6
HanXRQChr16g0500301 Helianthus annuus HOM05D005464 ORTHO05D006803 1.1e-51 207.6 280 46.8
PSO170G0224 Papaver somniferum HOM05D005464 ORTHO05D006803 2.5e-51 206.5 192 53.6
Cfa001959 Carpinus fangiana HOM05D005464 ORTHO05D006803 3.3e-51 206.1 285 45.6
Lsat_1_v5_gn_4_89921 Lactuca sativa HOM05D005464 ORTHO05D006803 3.3e-51 206.1 279 47.0
PSO017G6540 Papaver somniferum HOM05D005464 ORTHO05D006803 4.3e-51 205.7 192 54.2
QL05p029765 Quercus lobata HOM05D005464 ORTHO05D006803 9.6e-51 204.5 190 55.8
QL05p030112 Quercus lobata HOM05D005464 ORTHO05D006803 9.6e-51 204.5 190 55.8
Manes.11G057000 Manihot esculenta HOM05D005464 ORTHO05D006803 2.8e-50 203.0 285 46.0
Duzib160G0683 Durio zibethinus HOM05D005464 ORTHO05D006803 6.3e-50 201.8 190 55.8
Atru.chr1.2934 Acer truncatum HOM05D005464 ORTHO05D006803 1.8e-49 200.3 291 44.0
DCAR_021346 Daucus carota HOM05D005464 ORTHO05D006803 2.4e-49 199.9 206 54.9
Eucgr.J03066 Eucalyptus grandis HOM05D005464 ORTHO05D006803 6.9e-49 198.4 284 44.4
Gohir.D05G124200 Gossypium hirsutum HOM05D005464 ORTHO05D006803 1.2e-48 197.6 190 52.1
EL10Ac9g21898 Beta vulgaris HOM05D005464 ORTHO05D006803 1.5e-48 197.2 278 45.7
Phvul.005G178300 Phaseolus vulgaris HOM05D005464 ORTHO05D006803 1.5e-48 197.2 288 42.7
Psat5g302720 Pisum sativum HOM05D005464 ORTHO05D006803 2.0e-48 196.8 293 41.6
Gohir.A05G123300 Gossypium hirsutum HOM05D005464 ORTHO05D006803 2.6e-48 196.4 190 51.6
Gorai.009G128200 Gossypium raimondii HOM05D005464 ORTHO05D006803 5.9e-48 195.3 188 52.1
Haze_16562 Corylus avellana HOM05D005464 ORTHO05D006803 7.6e-48 194.9 295 42.0
FAN05G5161 Fragaria x ananassa HOM05D005464 ORTHO05D006803 7.6e-48 194.9 194 54.6
Lj9P500T36 Lonicera japonica HOM05D005464 ORTHO05D006803 1.0e-47 194.5 193 55.4
Lj3g0027830 Lotus japonicus HOM05D005464 ORTHO05D006803 1.0e-47 194.5 289 40.8
MD17G1212300 Malus domestica HOM05D005464 ORTHO05D006803 1.0e-47 194.5 200 54.0
RcHm_v2.0_Chr2g0135251 Rosa chinensis HOM05D005464 ORTHO05D006803 1.3e-47 194.1 194 53.1
FvH4_6g29660 Fragaria vesca HOM05D005464 ORTHO05D006803 2.2e-47 193.4 194 54.6
FAN09G2673 Fragaria x ananassa HOM05D005464 ORTHO05D006803 2.2e-47 193.4 194 54.6
FAN14G5059 Fragaria x ananassa HOM05D005464 ORTHO05D006803 3.8e-47 192.6 194 54.1
Prupe.3G087600 Prunus persica HOM05D005464 ORTHO05D006803 3.8e-47 192.6 197 53.3
Medtr2g103910 Medicago truncatula HOM05D005464 ORTHO05D006803 5.0e-47 192.2 288 41.0
CANSAT56G0380 Cannabis sativa HOM05D005464 ORTHO05D006803 6.5e-47 191.8 190 52.1
ECA232G3027 Erigeron canadensis HOM05D005464 ORTHO05D006803 8.4e-47 191.4 184 55.4
Eucgr.F03878 Eucalyptus grandis HOM05D005464 ORTHO05D006803 8.4e-47 191.4 189 54.5
VMungo1080G0510 Vigna mungo HOM05D005464 ORTHO05D006803 8.4e-47 191.4 286 41.6
Aqoxy7G02293 Aquilegia oxysepala HOM05D005464 ORTHO05D006803 3.2e-46 189.5 190 49.5
Sc06g0005910 Simmondsia chinensis HOM05D005464 ORTHO05D006803 5.5e-46 188.7 190 51.6
TPR.G37199 Trifolium pratense HOM05D005464 ORTHO05D006803 5.5e-46 188.7 305 38.7
Glyma.15G007300 Glycine max HOM05D005464 ORTHO05D006803 7.2e-46 188.3 288 40.6
Sed0012798 Sechium edule HOM05D005464 ORTHO05D006803 7.2e-46 188.3 285 41.4
Hund06557 Selenicereus undatus HOM05D005464 ORTHO05D006803 3.5e-45 186.0 286 43.4
Ca_01055_v3 Cicer arietinum L. HOM05D005464 ORTHO05D006803 6.1e-45 185.3 288 41.0
arahy.Tifrunner.gnm1.ann1.JVJR89 Arachis hypogaea HOM05D005464 ORTHO05D006803 7.9e-45 184.9 268 42.9
arahy.Tifrunner.gnm1.ann1.Y6ZEHB Arachis hypogaea HOM05D005464 ORTHO05D006803 7.9e-45 184.9 268 42.9
Cpa.g.sc10.270 Carica papaya HOM05D005464 ORTHO05D006803 7.9e-45 184.9 283 41.3
Lalb_Chr14g0373811 Lupinus albus HOM05D005464 ORTHO05D006803 1.0e-44 184.5 292 40.4
MELO3C017863.2 Cucumis melo HOM05D005464 ORTHO05D006803 5.1e-44 182.2 277 43.3
THA.LOC104812511 Tarenaya hassleriana HOM05D005464 ORTHO05D006803 5.1e-44 182.2 273 42.1
Glyma.13G365800 Glycine max HOM05D005464 ORTHO05D006803 1.5e-43 180.6 292 39.4
Lalb_Chr22g0350841 Lupinus albus HOM05D005464 ORTHO05D006803 4.3e-43 179.1 276 41.7
PGR102G0885 Punica granatum HOM05D005464 ORTHO05D006803 4.3e-43 179.1 191 49.2
SHI11227 Sapria himalayana HOM05D005464 ORTHO05D006803 5.7e-43 178.7 281 40.9
Atru.chr1.2936 Acer truncatum HOM05D005464 ORTHO05D006803 1.6e-42 177.2 194 50.0
CiPaw.02G157400 Carya illinoinensis HOM05D005464 ORTHO05D006803 1.6e-42 177.2 170 54.7
AUR62011516 Chenopodium quinoa HOM05D005464 ORTHO05D006803 1.1e-41 174.5 284 40.5
PGR031G2541 Punica granatum HOM05D005464 ORTHO05D006803 1.4e-41 174.1 290 39.3
vmacro16896 Vaccinium macrocarpon HOM05D005464 ORTHO05D006803 6.9e-41 171.8 194 51.5
BcaB02g08721 Brassica carinata HOM05D005464 ORTHO05D006803 1.2e-40 171.0 271 38.4
CARHR074410 Cardamine hirsuta HOM05D005464 ORTHO05D006803 2.0e-40 170.2 282 39.7
AUR62016335 Chenopodium quinoa HOM05D005464 ORTHO05D006803 2.0e-40 170.2 285 38.9
Aa31LG7G100 Aethionema arabicum HOM05D005464 ORTHO05D006803 7.7e-40 168.3 282 39.0
AT1G80090 Arabidopsis thaliana HOM05D005464 ORTHO05D006803 1.7e-39 167.2 276 40.2
MBI14_g16402_MAGBIO Magnolia biondii HOM05D005464 ORTHO05D006803 1.7e-39 167.2 190 50.0
CsaV3_4G001710 Cucumis sativus L. HOM05D005464 ORTHO05D006803 5.0e-39 165.6 287 40.4
Sp1g13650 Schrenkiella parvula HOM05D005464 ORTHO05D006803 8.5e-39 164.9 282 38.3
THA.LOC104812509 Tarenaya hassleriana HOM05D005464 ORTHO05D006803 8.5e-39 164.9 195 46.7
A06p11340 Brassica napus HOM05D005464 ORTHO05D006803 1.1e-38 164.5 281 38.8
BraA06t24313Z Brassica rapa HOM05D005464 ORTHO05D006803 1.1e-38 164.5 281 38.8
BcaC05g25470 Brassica carinata HOM05D005464 ORTHO05D006803 1.9e-38 163.7 280 38.6
C05p13460 Brassica napus HOM05D005464 ORTHO05D006803 1.9e-38 163.7 281 38.8
BolC5t30083H Brassica oleracea HOM05D005464 ORTHO05D006803 1.9e-38 163.7 281 38.8
AT1G15330 Arabidopsis thaliana HOM05D005464 ORTHO05D006803 2.5e-38 163.3 278 38.5
BcaC08g47570 Brassica carinata HOM05D005464 ORTHO05D006803 5.5e-38 162.2 270 38.9
C06p54250 Brassica napus HOM05D005464 ORTHO05D006803 5.5e-38 162.2 270 38.9
BolC6t40438H Brassica oleracea HOM05D005464 ORTHO05D006803 5.5e-38 162.2 270 38.9
Aa31LG4G370 Aethionema arabicum HOM05D005464 ORTHO05D006803 7.2e-38 161.8 261 37.5
AL1G27420 Arabidopsis lyrata HOM05D005464 ORTHO05D006803 1.6e-37 160.6 280 39.3
A07p45420 Brassica napus HOM05D005464 ORTHO05D006803 2.7e-37 159.8 270 38.9
Thhalv10019455m.g Eutrema salsugineum HOM05D005464 ORTHO05D006803 2.7e-37 159.8 284 37.7
Thhalv10008048m.g Eutrema salsugineum HOM05D005464 ORTHO05D006803 3.6e-37 159.5 284 36.6
Zm00001eb232620 Zea mays HOM05D005464 ORTHO05D006803 4.6e-37 159.1 309 38.5
CARHR015860 Cardamine hirsuta HOM05D005464 ORTHO05D006803 2.3e-36 156.8 281 37.7
Carub.0002s2743 Capsella rubella HOM05D005464 ORTHO05D006803 3.0e-36 156.4 284 37.0
ClCG07G012450 Citrullus lanatus HOM05D005464 ORTHO05D006803 3.0e-36 156.4 194 45.4
Carub.0001s1508 Capsella rubella HOM05D005464 ORTHO05D006803 3.9e-36 156.0 282 36.9
Sp5g35710 Schrenkiella parvula HOM05D005464 ORTHO05D006803 6.7e-36 155.2 188 45.7
HPP92_010901 Vanilla planifolia HOM05D005464 ORTHO05D006803 6.7e-36 155.2 187 47.6
Os02g0158900 Oryza sativa ssp. japonica HOM05D005464 ORTHO05D006803 5.7e-35 152.1 201 43.8
HPP92_016981 Vanilla planifolia HOM05D005464 ORTHO05D006803 1.3e-34 151.0 190 45.8
ATR0800G035 Amborella trichopoda HOM05D005464 ORTHO05D006803 4.8e-34 149.1 276 35.9
BcaC05g25495 Brassica carinata HOM05D005464 ORTHO05D006803 1.8e-33 147.1 182 44.0
VMungo1127G1748 Vigna mungo HOM05D005464 ORTHO05D006803 7.7e-32 141.7 193 41.5
TAR383G0332 Trochodendron aralioides HOM05D005464 ORTHO05D006803 2.9e-31 139.8 126 54.8
Mapoly0007s0086 Marchantia polymorpha HOM05D005464 ORTHO05D006803 3.9e-28 129.4 270 34.1
BraA07t32046Z Brassica rapa HOM05D005464 ORTHO05D006803 3.3e-27 126.3 270 34.8
Pp3c13_16980 Physcomitrium patens HOM05D005464 ORTHO05D006803 2.6e-24 116.7 190 36.3
SMO201G0050 Selaginella moellendorffii HOM05D005464 ORTHO05D006803 4.5e-24 115.9 195 35.9
Hma1.2p1_1144F.1_g261310 Hydrangea macrophylla HOM05D005464 ORTHO05D006803 5.9e-24 115.5 154 47.4
Pp3c3_23830 Physcomitrium patens HOM05D005464 ORTHO05D006803 4.2e-22 109.4 197 33.0
PGR102G1999 Punica granatum HOM05D005464 ORTHO05D006803 9.4e-22 108.2 114 47.4
AL2G41440 Arabidopsis lyrata HOM05D005464 ORTHO05D006803 1.4e-20 104.4 130 43.8
Psat6g000160 Pisum sativum HOM05D005464 ORTHO05D006803 1.1e-19 101.3 135 42.2
Nn1g00750 Nelumbo nucifera HOM05D005464 ORTHO05D006803 1.8e-17 94.0 118 46.6
Ciclev10026304m.g Citrus clementina HOM05D005464 ORTHO05D006803 1.6e-16 90.9 166 38.6
CBR_g24374 Chara braunii HOM05D005464 ORTHO05D006803 1.3e-15 87.8 338 26.0
CBR_g38673 Chara braunii HOM05D005464 ORTHO05D006803 2.3e-12 77.0 247 26.3
AagrBONN_evm.TU.Sc2ySwM_368.1642 Anthoceros agrestis HOM05D005464 ORTHO05D006803 1.8e-09 67.4 178 29.2
SEGI_27934 Sequoiadendron giganteum HOM05D005464 ORTHO05D006803 7.0e-09 65.5 192 26.6
Zm00001eb160610 Zea mays HOM05D001741 ORTHO05D002196 5.9e-08 62.4 147 27.2
SEGI_39315 Sequoiadendron giganteum HOM05D005464 ORTHO05D006803 1.9e-06 57.4 73 43.8
Nn3g17147 Nelumbo nucifera HOM05D001741 ORTHO05D002196 3.2e-06 56.6 145 24.1
TPR.G13768 Trifolium pratense HOM05D001741 ORTHO05D002196 7.2e-06 55.5 147 21.8
Phvul.002G089600 Phaseolus vulgaris HOM05D001741 ORTHO05D002196 9.4e-06 55.1 144 21.5


User provided reference genes

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