Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc04_g04400 Coffea canephora HOM05D004202 ORTHO05D005021 3.2e-104 381.7 190 100.0
Nitab4.5_0003463g0060 Nicotiana tabacum HOM05D004202 ORTHO05D005021 7.8e-82 307.4 189 80.4
Nitab4.5_0008575g0020 Nicotiana tabacum HOM05D004202 ORTHO05D005021 7.8e-82 307.4 187 80.2
Dinv30605 Davidia involucrata HOM05D004202 ORTHO05D005021 1.7e-81 306.2 179 83.8
CSS0029540 Camellia sinensis var. sinensis HOM05D004202 ORTHO05D005021 3.9e-81 305.1 175 84.0
CSS0043041 Camellia sinensis var. sinensis HOM05D004202 ORTHO05D005021 3.9e-81 305.1 175 84.0
PGSC0003DMG400000640 Solanum tuberosum HOM05D004202 ORTHO05D005021 5.0e-81 304.7 188 80.3
Solyc03g116740.3 Solanum lycopersicum HOM05D004202 ORTHO05D005021 8.6e-81 303.9 188 80.3
Sopen03g035650 Solanum pennellii HOM05D004202 ORTHO05D005021 8.6e-81 303.9 188 80.3
SalBow2G2770 Salvia bowleyana HOM05D004202 ORTHO05D005021 1.1e-80 303.5 190 76.3
CAN.G407.80 Capsicum annuum HOM05D004202 ORTHO05D005021 4.3e-80 301.6 174 83.9
CiPaw.01G248300 Carya illinoinensis HOM05D004202 ORTHO05D005021 1.6e-79 299.7 173 82.1
Oeu042085.1 Olea europaea HOM05D004202 ORTHO05D005021 2.8e-79 298.9 190 76.3
TAR383G0028 Trochodendron aralioides HOM05D004202 ORTHO05D005021 2.8e-79 298.9 188 76.1
SGA_v2.0_scaffold37G14766 Striga asiatica HOM05D004202 ORTHO05D005021 3.6e-79 298.5 175 80.0
Cfa001960 Carpinus fangiana HOM05D004202 ORTHO05D005021 4.7e-79 298.1 173 82.7
Haze_16560 Corylus avellana HOM05D004202 ORTHO05D005021 4.7e-79 298.1 180 81.7
RcHm_v2.0_Chr2g0135261 Rosa chinensis HOM05D004202 ORTHO05D005021 4.7e-79 298.1 194 74.2
MSTRG.11142 Avicennia marina HOM05D004202 ORTHO05D005021 6.2e-79 297.7 182 79.7
FAN09G0069 Fragaria x ananassa HOM05D004202 ORTHO05D005021 8.1e-79 297.4 192 75.0
FvH4_6g29670 Fragaria vesca HOM05D004202 ORTHO05D005021 1.1e-78 297.0 192 75.0
FAN05G3204 Fragaria x ananassa HOM05D004202 ORTHO05D005021 1.1e-78 297.0 192 75.0
Peaxi162Scf00332g00619 Petunia axillaris HOM05D004202 ORTHO05D005021 1.1e-78 297.0 187 76.5
Rhsim08G0212900 Rhododendron simsii HOM05D004202 ORTHO05D005021 1.4e-78 296.6 185 80.5
Prupe.3G087500 Prunus persica HOM05D004202 ORTHO05D005021 2.3e-78 295.8 188 76.6
Actinidia01745 Actinidia chinensis HOM05D004202 ORTHO05D005021 3.1e-78 295.4 173 83.8
Lj5A72T20 Lonicera japonica HOM05D004202 ORTHO05D005021 3.1e-78 295.4 173 83.8
TWI18G0582 Tripterygium wilfordii HOM05D004202 ORTHO05D005021 3.1e-78 295.4 171 83.6
Potri.001G204100 Populus trichocarpa HOM05D004202 ORTHO05D005021 4.0e-78 295.0 171 83.6
GSVIVG01017341001 Vitis vinifera HOM05D004202 ORTHO05D005021 5.2e-78 294.7 183 77.6
LjContig00542g0021230 Lotus japonicus HOM05D004202 ORTHO05D005021 6.8e-78 294.3 190 75.8
Oeu013862.1 Olea europaea HOM05D004202 ORTHO05D005021 6.8e-78 294.3 169 82.8
COL.COLO4_11948 Corchorus olitorius HOM05D004202 ORTHO05D005021 1.2e-77 293.5 173 80.9
Duzib235G0370 Durio zibethinus HOM05D004202 ORTHO05D005021 1.2e-77 293.5 181 77.9
Solyc06g068150.3 Solanum lycopersicum HOM05D004202 ORTHO05D005021 1.2e-77 293.5 180 78.3
Eucgr.F03877 Eucalyptus grandis HOM05D004202 ORTHO05D005021 2.0e-77 292.7 173 79.8
Psat7g257200 Pisum sativum HOM05D004202 ORTHO05D005021 2.0e-77 292.7 184 75.5
Potri.003G032200 Populus trichocarpa HOM05D004202 ORTHO05D005021 2.0e-77 292.7 171 82.5
Lalb_Chr01g0012351 Lupinus albus HOM05D004202 ORTHO05D005021 4.4e-77 291.6 184 76.6
Manes.11G056900 Manihot esculenta HOM05D004202 ORTHO05D005021 4.4e-77 291.6 169 82.2
Hma1.2p1_0042F.1_g025610 Hydrangea macrophylla HOM05D004202 ORTHO05D005021 7.5e-77 290.8 173 80.9
Lj9A500T78 Lonicera japonica HOM05D004202 ORTHO05D005021 9.8e-77 290.4 175 80.6
Sopen06g025420 Solanum pennellii HOM05D004202 ORTHO05D005021 9.8e-77 290.4 180 77.8
Thecc.06G024900 Theobroma cacao HOM05D004202 ORTHO05D005021 9.8e-77 290.4 181 76.8
Manes.04G112600 Manihot esculenta HOM05D004202 ORTHO05D005021 1.3e-76 290.0 171 81.9
CANSAT56G4089 Cannabis sativa HOM05D004202 ORTHO05D005021 1.7e-76 289.7 173 80.9
MD17G1212200 Malus domestica HOM05D004202 ORTHO05D005021 2.2e-76 289.3 173 79.2
DCAR_025511 Daucus carota HOM05D004202 ORTHO05D005021 2.9e-76 288.9 173 79.8
Gohir.A06G185500 Gossypium hirsutum HOM05D004202 ORTHO05D005021 2.9e-76 288.9 181 76.8
Prupe.3G087400 Prunus persica HOM05D004202 ORTHO05D005021 2.9e-76 288.9 188 75.0
Hma1.2p1_1144F.1_g261300 Hydrangea macrophylla HOM05D004202 ORTHO05D005021 4.9e-76 288.1 187 75.4
TPR.G38651 Trifolium pratense HOM05D004202 ORTHO05D005021 6.4e-76 287.7 185 74.6
MBI04_g19388_MAGBIO Magnolia biondii HOM05D004202 ORTHO05D005021 1.1e-75 287.0 169 82.2
Gorai.010G225300 Gossypium raimondii HOM05D004202 ORTHO05D005021 1.9e-75 286.2 173 78.6
QL05p029813 Quercus lobata HOM05D004202 ORTHO05D005021 2.4e-75 285.8 175 78.9
A05p33580 Brassica napus HOM05D004202 ORTHO05D005021 4.1e-75 285.0 186 74.7
Ca_20447_v3 Cicer arietinum L. HOM05D004202 ORTHO05D005021 4.1e-75 285.0 171 77.8
Nn8g39505 Nelumbo nucifera HOM05D004202 ORTHO05D005021 4.1e-75 285.0 173 80.9
Sp3g14140 Schrenkiella parvula HOM05D004202 ORTHO05D005021 4.1e-75 285.0 186 74.7
Atru.chr1.2949 Acer truncatum HOM05D004202 ORTHO05D005021 5.4e-75 284.6 175 76.6
PGSC0003DMG400028510 Solanum tuberosum HOM05D004202 ORTHO05D005021 5.4e-75 284.6 173 78.0
VMungo0331G0004 Vigna mungo HOM05D004202 ORTHO05D005021 5.4e-75 284.6 176 76.7
FAN14G0864 Fragaria x ananassa HOM05D004202 ORTHO05D005021 9.2e-75 283.9 216 66.7
Gohir.D06G192100 Gossypium hirsutum HOM05D004202 ORTHO05D005021 9.2e-75 283.9 173 78.0
BcaC05g28930 Brassica carinata HOM05D004202 ORTHO05D005021 1.6e-74 283.1 186 74.2
C05p50570 Brassica napus HOM05D004202 ORTHO05D005021 1.6e-74 283.1 186 74.2
PGR102G1411 Punica granatum HOM05D004202 ORTHO05D005021 1.6e-74 283.1 171 78.9
Aa31LG8G3020 Aethionema arabicum HOM05D004202 ORTHO05D005021 3.5e-74 282.0 171 80.1
Medtr4g010120 Medicago truncatula HOM05D004202 ORTHO05D005021 3.5e-74 282.0 171 78.4
Thhalv10021241m.g Eutrema salsugineum HOM05D004202 ORTHO05D005021 4.6e-74 281.6 186 73.7
BolC5t33802H Brassica oleracea HOM05D004202 ORTHO05D005021 7.8e-74 280.8 186 73.7
BcaC09g48559 Brassica carinata HOM05D004202 ORTHO05D005021 1.0e-73 280.4 186 74.7
C01p48640 Brassica napus HOM05D004202 ORTHO05D005021 1.0e-73 280.4 186 74.7
BolC1t04818H Brassica oleracea HOM05D004202 ORTHO05D005021 1.0e-73 280.4 186 74.7
BraA05t22181Z Brassica rapa HOM05D004202 ORTHO05D005021 1.0e-73 280.4 171 79.5
CARHR090910 Cardamine hirsuta HOM05D004202 ORTHO05D005021 1.0e-73 280.4 178 78.7
BcaB06g25690 Brassica carinata HOM05D004202 ORTHO05D005021 1.3e-73 280.0 186 73.7
Ah.01g020590 Amaranthus hybridus HOM05D004202 ORTHO05D005021 1.7e-73 279.6 182 74.2
AT3G15820 Arabidopsis thaliana HOM05D004202 ORTHO05D005021 1.7e-73 279.6 179 77.7
A01p38300 Brassica napus HOM05D004202 ORTHO05D005021 1.7e-73 279.6 186 74.7
Peaxi162Scf00207g00630 Petunia axillaris HOM05D004202 ORTHO05D005021 1.7e-73 279.6 173 76.3
THA.LOC104810509 Tarenaya hassleriana HOM05D004202 ORTHO05D005021 1.7e-73 279.6 191 72.8
Aqoxy7G02289 Aquilegia oxysepala HOM05D004202 ORTHO05D005021 2.3e-73 279.3 177 75.7
AL3G28480 Arabidopsis lyrata HOM05D004202 ORTHO05D005021 2.3e-73 279.3 179 77.7
BcaC01g03855 Brassica carinata HOM05D004202 ORTHO05D005021 3.0e-73 278.9 186 72.6
A03p39480 Brassica napus HOM05D004202 ORTHO05D005021 3.0e-73 278.9 186 72.6
C03p47880 Brassica napus HOM05D004202 ORTHO05D005021 3.0e-73 278.9 186 72.6
BolC3t17065H Brassica oleracea HOM05D004202 ORTHO05D005021 3.0e-73 278.9 186 72.6
BraA03t13098Z Brassica rapa HOM05D004202 ORTHO05D005021 3.0e-73 278.9 186 72.6
CAN.G1503.7 Capsicum annuum HOM05D004202 ORTHO05D005021 3.0e-73 278.9 181 74.0
Hund06558 Selenicereus undatus HOM05D004202 ORTHO05D005021 1.5e-72 276.6 179 73.7
BcaB04g20901 Brassica carinata HOM05D004202 ORTHO05D005021 1.9e-72 276.2 186 73.1
Carub.0003s1556 Capsella rubella HOM05D004202 ORTHO05D005021 1.9e-72 276.2 171 79.5
BraA01t03881Z Brassica rapa HOM05D004202 ORTHO05D005021 3.3e-72 275.4 186 73.7
Ciclev10026224m.g Citrus clementina HOM05D004202 ORTHO05D005021 3.3e-72 275.4 174 75.9
Glyma.08G213100 Glycine max HOM05D004202 ORTHO05D005021 4.3e-72 275.0 176 74.4
Glyma.07G029800 Glycine max HOM05D004202 ORTHO05D005021 7.3e-72 274.2 173 75.1
Lsat_1_v5_gn_4_90081 Lactuca sativa HOM05D004202 ORTHO05D005021 7.3e-72 274.2 182 71.4
Duzib192G0312 Durio zibethinus HOM05D004202 ORTHO05D005021 9.5e-72 273.9 181 74.0
Phvul.010G156400 Phaseolus vulgaris HOM05D004202 ORTHO05D005021 9.5e-72 273.9 179 73.7
Sc10g0008080 Simmondsia chinensis HOM05D004202 ORTHO05D005021 9.5e-72 273.9 186 69.9
HanXRQChr16g0500411 Helianthus annuus HOM05D004202 ORTHO05D005021 1.6e-71 273.1 184 70.1
Sed0008120 Sechium edule HOM05D004202 ORTHO05D005021 2.8e-71 272.3 169 75.7
Sc10g0005940 Simmondsia chinensis HOM05D004202 ORTHO05D005021 4.7e-71 271.6 189 68.3
Migut.I00763 Erythranthe guttata HOM05D004202 ORTHO05D005021 6.2e-71 271.2 173 74.0
arahy.Tifrunner.gnm1.ann1.KAJ2Z5 Arachis hypogaea HOM05D004202 ORTHO05D005021 8.1e-71 270.8 171 76.6
arahy.Tifrunner.gnm1.ann1.J5QNAH Arachis hypogaea HOM05D004202 ORTHO05D005021 1.4e-70 270.0 171 76.6
HanXRQChr02g0058561 Helianthus annuus HOM05D004202 ORTHO05D005021 1.8e-70 269.6 172 75.0
unitig_699.g19094 Utricularia gibba HOM05D004202 ORTHO05D005021 1.8e-70 269.6 169 74.6
ClCG07G012460 Citrullus lanatus HOM05D004202 ORTHO05D005021 2.3e-70 269.2 169 74.0
PSO170G3116 Papaver somniferum HOM05D004202 ORTHO05D005021 2.3e-70 269.2 184 69.6
arahy.Tifrunner.gnm1.ann1.42NKCZ Arachis hypogaea HOM05D004202 ORTHO05D005021 5.2e-70 268.1 171 76.0
Sabra03G0018400 Salix brachista HOM05D004202 ORTHO05D005021 6.8e-70 267.7 190 67.9
Cpa.g.sc10.268 Carica papaya HOM05D004202 ORTHO05D005021 8.9e-70 267.3 174 74.1
ECA232G2164 Erigeron canadensis HOM05D004202 ORTHO05D005021 8.9e-70 267.3 175 73.1
CARHR090920 Cardamine hirsuta HOM05D004202 ORTHO05D005021 1.2e-69 266.9 173 74.6
CsaV3_4G001700 Cucumis sativus L. HOM05D004202 ORTHO05D005021 4.4e-69 265.0 169 72.8
EL10Ac9g21900 Beta vulgaris HOM05D004202 ORTHO05D005021 7.6e-69 264.2 175 72.0
AUR62011519 Chenopodium quinoa HOM05D004202 ORTHO05D005021 7.6e-69 264.2 189 66.7
AUR62016337 Chenopodium quinoa HOM05D004202 ORTHO05D005021 9.9e-69 263.8 189 67.2
MELO3C017864.2 Cucumis melo HOM05D004202 ORTHO05D005021 1.3e-68 263.5 169 72.8
Carub.0003s1557 Capsella rubella HOM05D004202 ORTHO05D005021 1.7e-68 263.1 173 74.6
PSO017G2363 Papaver somniferum HOM05D004202 ORTHO05D005021 1.7e-68 263.1 173 71.7
Lj3g0004144 Lotus japonicus HOM05D004202 ORTHO05D005021 1.4e-67 260.0 190 70.0
AL3G28490 Arabidopsis lyrata HOM05D004202 ORTHO05D005021 5.4e-67 258.1 171 74.9
AT3G15830 Arabidopsis thaliana HOM05D004202 ORTHO05D005021 9.2e-67 257.3 171 74.9
Aqoxy4G02272 Aquilegia oxysepala HOM05D004202 ORTHO05D005021 1.2e-66 256.9 181 69.1
Gohir.A05G123350 Gossypium hirsutum HOM05D004202 ORTHO05D005021 2.7e-66 255.8 169 74.0
HPP92_023144 Vanilla planifolia HOM05D004202 ORTHO05D005021 6.0e-66 254.6 173 69.9
Gohir.D05G124300 Gossypium hirsutum HOM05D004202 ORTHO05D005021 4.3e-64 248.4 174 69.0
Gorai.009G128300 Gossypium raimondii HOM05D004202 ORTHO05D005021 7.3e-64 247.7 174 69.0
CDE07G1814 Ceratophyllum demersum HOM05D004202 ORTHO05D005021 6.2e-63 244.6 173 68.8
Thhalv10015624m.g Eutrema salsugineum HOM05D004202 ORTHO05D005021 8.1e-63 244.2 170 68.8
A02p09730 Brassica napus HOM05D004202 ORTHO05D005021 4.4e-61 238.4 169 67.5
BraA02t06038Z Brassica rapa HOM05D004202 ORTHO05D005021 4.4e-61 238.4 169 67.5
BcaC03g14245 Brassica carinata HOM05D004202 ORTHO05D005021 5.8e-61 238.0 169 67.5
C02p16260 Brassica napus HOM05D004202 ORTHO05D005021 5.8e-61 238.0 169 67.5
BolC2t07727H Brassica oleracea HOM05D004202 ORTHO05D005021 5.8e-61 238.0 169 67.5
BcaB05g22200 Brassica carinata HOM05D004202 ORTHO05D005021 7.6e-61 237.7 169 67.5
Os06g0607100 Oryza sativa ssp. japonica HOM05D004202 ORTHO05D005021 3.8e-60 235.3 176 66.5
MBI04_g42944_MAGBIO Magnolia biondii HOM05D004202 ORTHO05D005021 1.9e-59 233.0 137 81.8
Lj3g0021663 Lotus japonicus HOM05D004202 ORTHO05D005021 1.6e-58 229.9 170 68.2
Thecc.06G024300 Theobroma cacao HOM05D004202 ORTHO05D005021 4.6e-58 228.4 143 76.9
Thecc.06G024700 Theobroma cacao HOM05D004202 ORTHO05D005021 1.3e-57 226.9 143 76.2
Lalb_Chr25g0279291 Lupinus albus HOM05D004202 ORTHO05D005021 9.9e-53 210.7 127 78.7
Mapoly0019s0013 Marchantia polymorpha HOM05D004202 ORTHO05D005021 3.2e-51 205.7 173 56.6
Sp6g17250 Schrenkiella parvula HOM05D004202 ORTHO05D005021 4.6e-50 201.8 142 68.3
Lsat_1_v5_gn_1_34380 Lactuca sativa HOM05D004202 ORTHO05D005021 7.9e-50 201.1 179 59.2
Oeu013866.1 Olea europaea HOM05D004202 ORTHO05D005021 3.6e-47 192.2 173 57.8
Sabra01G0157700 Salix brachista HOM05D004202 ORTHO05D005021 1.1e-46 190.7 192 57.8
Pp3c20_11410 Physcomitrium patens HOM05D004202 ORTHO05D005021 2.4e-43 179.5 172 52.9
FAN02G2528 Fragaria x ananassa HOM05D004202 ORTHO05D005021 1.2e-42 177.2 256 43.8
Oeu042081.1 Olea europaea HOM05D004202 ORTHO05D005021 4.3e-40 168.7 175 54.3
Oeu013867.1 Olea europaea HOM05D004202 ORTHO05D005021 4.0e-38 162.2 190 48.4
BcaB01g04346 Brassica carinata HOM05D004202 ORTHO05D005021 6.5e-36 154.8 169 51.5
Pp3c8_10870 Physcomitrium patens HOM05D004202 ORTHO05D005021 2.1e-34 149.8 123 56.1
Nitab4.5_0000373g0050 Nicotiana tabacum HOM05D004202 ORTHO05D005021 1.3e-28 130.6 81 77.8
Actinidia15761 Actinidia chinensis HOM05D004202 ORTHO05D005021 6.7e-25 118.2 100 60.0
AagrBONN_evm.TU.Sc2ySwM_228.136 Anthoceros agrestis HOM05D004202 ORTHO05D005021 7.4e-16 88.2 89 47.2
BcaB08g35892 Brassica carinata HOM05D004202 ORTHO05D096023 4.4e-08 62.4 76 50.0
Nn5g27834 Nelumbo nucifera HOM05D004202 ORTHO05D005021 1.7e-07 60.5 40 67.5


User provided reference genes

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