Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc04_g03760 Coffea canephora HOM05D004705 ORTHO05D005595 0.0e+00 1575.1 814 100.0
PGSC0003DMG400005697 Solanum tuberosum HOM05D004705 ORTHO05D005595 1.4e-260 903.3 831 60.8
Peaxi162Scf00015g00532 Petunia axillaris HOM05D004705 ORTHO05D005595 3.1e-260 902.1 847 58.6
Dinv38075 Davidia involucrata HOM05D004705 ORTHO05D005595 2.6e-259 899.0 820 61.6
MSTRG.20727 Avicennia marina HOM05D004705 ORTHO05D005595 3.4e-259 898.7 826 60.4
Oeu051920.1 Olea europaea HOM05D004705 ORTHO05D005595 2.2e-258 896.0 835 59.0
Sopen03g038820 Solanum pennellii HOM05D004705 ORTHO05D005595 7.1e-257 891.0 831 59.8
Solyc03g119940.3 Solanum lycopersicum HOM05D004705 ORTHO05D005595 1.3e-255 886.7 831 59.6
CSS0020826 Camellia sinensis var. sinensis HOM05D004705 ORTHO05D005595 8.9e-252 874.0 814 60.1
CSS0001459 Camellia sinensis var. sinensis HOM05D004705 ORTHO05D005595 5.8e-251 871.3 814 59.8
CAN.G438.96 Capsicum annuum HOM05D004705 ORTHO05D005595 1.9e-249 866.3 826 58.4
vmacro16932 Vaccinium macrocarpon HOM05D004705 ORTHO05D005595 2.4e-249 865.9 843 58.5
Nitab4.5_0004817g0040 Nicotiana tabacum HOM05D004705 ORTHO05D005595 7.8e-248 860.9 828 58.1
Oeu000022.1 Olea europaea HOM05D004705 ORTHO05D005595 3.0e-239 832.4 816 56.5
Potri.003G058600 Populus trichocarpa HOM05D004705 ORTHO05D005595 1.1e-238 830.5 815 58.0
Thecc.06G077700 Theobroma cacao HOM05D004705 ORTHO05D005595 2.5e-238 829.3 814 58.0
Ciclev10024977m.g Citrus clementina HOM05D004705 ORTHO05D005595 5.6e-238 828.2 819 56.9
QL05p026953 Quercus lobata HOM05D004705 ORTHO05D005595 4.8e-237 825.1 817 57.5
Prupe.3G077300 Prunus persica HOM05D004705 ORTHO05D005595 1.1e-236 823.9 813 56.8
SGA_v2.0_scaffold153G36966 Striga asiatica HOM05D004705 ORTHO05D005595 4.0e-236 822.0 821 58.5
Cfa002032 Carpinus fangiana HOM05D004705 ORTHO05D005595 9.0e-236 820.8 812 57.0
Lj5A66T57 Lonicera japonica HOM05D004705 ORTHO05D005595 4.5e-235 818.5 836 57.1
Haze_16487 Corylus avellana HOM05D004705 ORTHO05D005595 9.9e-235 817.4 814 56.9
Dinv30551 Davidia involucrata HOM05D004705 ORTHO05D005595 6.4e-234 814.7 798 58.9
RhsimUnG0009400 Rhododendron simsii HOM05D004705 ORTHO05D005595 9.3e-233 810.8 890 54.3
FvH4_6g30700 Fragaria vesca HOM05D004705 ORTHO05D005595 1.6e-232 810.1 813 57.1
FAN02G3197 Fragaria x ananassa HOM05D004705 ORTHO05D005595 3.5e-232 808.9 813 56.7
ECA247G3649 Erigeron canadensis HOM05D004705 ORTHO05D005595 6.0e-232 808.1 817 56.2
FAN09G0848 Fragaria x ananassa HOM05D004705 ORTHO05D005595 7.9e-232 807.7 813 56.8
MSTRG.17159 Avicennia marina HOM05D004705 ORTHO05D005595 1.3e-231 807.0 819 54.7
RcHm_v2.0_Chr2g0137071 Rosa chinensis HOM05D004705 ORTHO05D005595 1.3e-231 807.0 813 56.7
Duzib235G0494 Durio zibethinus HOM05D004705 ORTHO05D005595 1.7e-231 806.6 815 57.2
Rhsim12G0195000 Rhododendron simsii HOM05D004705 ORTHO05D005595 1.1e-230 803.9 890 53.9
Duzib160G0698 Durio zibethinus HOM05D004705 ORTHO05D005595 1.1e-228 797.3 790 58.0
FAN14G4493 Fragaria x ananassa HOM05D004705 ORTHO05D005595 1.8e-228 796.6 786 57.6
DCAR_025463 Daucus carota HOM05D004705 ORTHO05D005595 6.9e-228 794.7 831 55.5
Manes.04G119400 Manihot esculenta HOM05D004705 ORTHO05D005595 1.5e-227 793.5 820 55.9
Gohir.A02G124100 Gossypium hirsutum HOM05D004705 ORTHO05D005595 3.4e-227 792.3 814 56.5
FAN05G0816 Fragaria x ananassa HOM05D004705 ORTHO05D005595 1.3e-226 790.4 815 55.1
TAR626G1984 Trochodendron aralioides HOM05D004705 ORTHO05D005595 1.9e-225 786.6 829 54.6
SalBow5G4930 Salvia bowleyana HOM05D004705 ORTHO05D005595 9.3e-225 784.3 759 57.2
Atru.chr1.3167 Acer truncatum HOM05D004705 ORTHO05D005595 1.9e-222 776.5 815 54.5
Gohir.D03G064900 Gossypium hirsutum HOM05D004705 ORTHO05D005595 2.5e-222 776.2 849 53.8
Gorai.002G057500 Gossypium raimondii HOM05D004705 ORTHO05D005595 1.6e-221 773.5 849 53.7
MD17G1201400 Malus domestica HOM05D004705 ORTHO05D005595 2.8e-221 772.7 824 53.2
CiPaw.01G242500 Carya illinoinensis HOM05D004705 ORTHO05D005595 1.2e-219 767.3 815 54.2
CsaV3_3G026670 Cucumis sativus L. HOM05D004705 ORTHO05D005595 1.2e-219 767.3 817 53.6
HanXRQChr02g0032571 Helianthus annuus HOM05D004705 ORTHO05D005595 3.4e-219 765.8 816 55.0
Nn8g39334 Nelumbo nucifera HOM05D004705 ORTHO05D005595 3.8e-218 762.3 811 53.6
GSVIVG01017208001 Vitis vinifera HOM05D004705 ORTHO05D005595 8.4e-218 761.1 813 55.5
Potri.001G175500 Populus trichocarpa HOM05D004705 ORTHO05D005595 1.1e-217 760.8 791 55.2
Aqoxy7G01953 Aquilegia oxysepala HOM05D004705 ORTHO05D005595 9.3e-217 757.7 835 52.9
MELO3C012944.2 Cucumis melo HOM05D004705 ORTHO05D005595 2.1e-216 756.5 819 52.7
TAR383G1056 Trochodendron aralioides HOM05D004705 ORTHO05D005595 2.1e-216 756.5 831 53.2
CANSAT56G4120 Cannabis sativa HOM05D004705 ORTHO05D005595 5.1e-215 751.9 827 53.7
ClCG07G012910 Citrullus lanatus HOM05D004705 ORTHO05D005595 4.3e-214 748.8 821 52.6
Lsat_1_v5_gn_1_33801 Lactuca sativa HOM05D004705 ORTHO05D005595 9.6e-214 747.7 829 55.2
Glyma.15G011700 Glycine max HOM05D004705 ORTHO05D005595 1.6e-213 746.9 828 53.0
Lj3g0018532 Lotus japonicus HOM05D004705 ORTHO05D005595 5.9e-211 738.4 804 53.2
TWI75G0140 Tripterygium wilfordii HOM05D004705 ORTHO05D005595 3.8e-210 735.7 813 52.9
Sed0012410 Sechium edule HOM05D004705 ORTHO05D005595 1.3e-207 727.2 820 50.9
Hund00574 Selenicereus undatus HOM05D004705 ORTHO05D005595 5.7e-206 721.8 822 52.8
Manes.11G049500 Manihot esculenta HOM05D004705 ORTHO05D005595 1.6e-205 720.3 663 59.0
PGR031G3493 Punica granatum HOM05D004705 ORTHO05D005595 2.2e-205 719.9 826 51.9
Phvul.005G173800 Phaseolus vulgaris HOM05D004705 ORTHO05D005595 3.7e-205 719.2 817 52.3
EL10Ac9g21966 Beta vulgaris HOM05D004705 ORTHO05D005595 5.9e-203 711.8 832 50.8
Glyma.13G362100 Glycine max HOM05D004705 ORTHO05D005595 4.2e-201 705.7 813 51.4
Ca_01096_v3 Cicer arietinum L. HOM05D004705 ORTHO05D005595 1.2e-200 704.1 786 52.5
Medtr2g102680 Medicago truncatula HOM05D004705 ORTHO05D005595 1.4e-199 700.7 776 53.2
Sp3g13840 Schrenkiella parvula HOM05D004705 ORTHO05D005595 1.5e-198 697.2 817 50.9
AUR62016408 Chenopodium quinoa HOM05D004705 ORTHO05D005595 1.4e-196 690.6 826 48.8
PSO017G1026 Papaver somniferum HOM05D004705 ORTHO05D005595 1.5e-195 687.2 813 50.4
PSO170G5959 Papaver somniferum HOM05D004705 ORTHO05D005595 1.7e-194 683.7 812 50.0
AUR62011594 Chenopodium quinoa HOM05D004705 ORTHO05D005595 1.9e-193 680.2 647 57.7
Lalb_Chr24g0395661 Lupinus albus HOM05D004705 ORTHO05D005595 7.2e-193 678.3 692 53.9
TPR.G37249 Trifolium pratense HOM05D004705 ORTHO05D005595 2.1e-192 676.8 818 49.8
Aa31LG8G2800 Aethionema arabicum HOM05D004705 ORTHO05D005595 2.7e-192 676.4 818 51.2
MBI04_g43364_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 2.7e-192 676.4 865 48.1
Eucgr.J03029 Eucalyptus grandis HOM05D004705 ORTHO05D005595 1.8e-191 673.7 784 52.7
AL3G28180 Arabidopsis lyrata HOM05D004705 ORTHO05D005595 2.0e-190 670.2 813 49.8
THA.LOC104818041 Tarenaya hassleriana HOM05D004705 ORTHO05D005595 2.0e-190 670.2 823 49.5
COL.COLO4_12857 Corchorus olitorius HOM05D004705 ORTHO05D005595 5.7e-190 668.7 785 52.0
Carub.0003s1530 Capsella rubella HOM05D004705 ORTHO05D005595 7.4e-190 668.3 818 49.8
A05p33830 Brassica napus HOM05D004705 ORTHO05D005595 2.8e-189 666.4 819 49.8
Cpa.g.c32383.1 Carica papaya HOM05D004705 ORTHO05D005595 1.8e-188 663.7 731 54.6
AT3G15550 Arabidopsis thaliana HOM05D004705 ORTHO05D005595 3.1e-188 662.9 816 48.9
VMungo1080G1183 Vigna mungo HOM05D004705 ORTHO05D005595 3.1e-188 662.9 808 50.0
Sc12g0008970 Simmondsia chinensis HOM05D004705 ORTHO05D005595 4.5e-187 659.1 825 49.2
C01p48810 Brassica napus HOM05D004705 ORTHO05D005595 7.7e-187 658.3 816 48.9
CARHR090640 Cardamine hirsuta HOM05D004705 ORTHO05D005595 2.9e-186 656.4 812 48.4
Lalb_Chr22g0351091 Lupinus albus HOM05D004705 ORTHO05D005595 2.9e-186 656.4 795 49.8
Nitab4.5_0000410g0340 Nicotiana tabacum HOM05D004705 ORTHO05D005595 2.1e-184 650.2 439 73.1
Psat5g299960 Pisum sativum HOM05D004705 ORTHO05D005595 3.6e-184 649.4 621 56.7
BraA01t03898Z Brassica rapa HOM05D004705 ORTHO05D005595 6.1e-184 648.7 816 48.5
Thhalv10020202m.g Eutrema salsugineum HOM05D004705 ORTHO05D005595 1.8e-183 647.1 814 48.6
BcaB06g29595 Brassica carinata HOM05D004705 ORTHO05D005595 2.3e-183 646.7 816 49.3
C05p51460 Brassica napus HOM05D004705 ORTHO05D005595 1.2e-182 644.4 816 48.7
A01p38480 Brassica napus HOM05D004705 ORTHO05D005595 2.6e-182 643.3 816 48.3
BcaB04g20914 Brassica carinata HOM05D004705 ORTHO05D005595 5.7e-182 642.1 818 47.8
arahy.Tifrunner.gnm1.ann1.1G4SNU Arachis hypogaea HOM05D004705 ORTHO05D005595 9.7e-182 641.3 815 48.1
BcaC09g48528 Brassica carinata HOM05D004705 ORTHO05D005595 4.8e-181 639.0 816 47.8
Sabra01G0137000 Salix brachista HOM05D004705 ORTHO05D005595 4.8e-181 639.0 775 49.3
BcaC05g28954 Brassica carinata HOM05D004705 ORTHO05D005595 6.3e-181 638.6 817 48.5
BolC1t04836H Brassica oleracea HOM05D004705 ORTHO05D005595 1.1e-180 637.9 816 48.2
BraA05t22205Z Brassica rapa HOM05D004705 ORTHO05D005595 9.1e-180 634.8 811 48.3
unitig_26.g8885 Utricularia gibba HOM05D004705 ORTHO05D005595 2.7e-179 633.3 658 52.9
arahy.Tifrunner.gnm1.ann1.WXP04W Arachis hypogaea HOM05D004705 ORTHO05D005595 3.5e-179 632.9 811 47.1
arahy.Tifrunner.gnm1.ann1.HFN88V Arachis hypogaea HOM05D004705 ORTHO05D005595 7.7e-179 631.7 785 50.4
BolC5t33833H Brassica oleracea HOM05D004705 ORTHO05D005595 7.5e-174 615.1 819 46.8
Migut.B01589 Erythranthe guttata HOM05D004705 ORTHO05D005595 2.2e-173 613.6 816 45.8
Nn2g11880 Nelumbo nucifera HOM05D004705 ORTHO05D005595 4.0e-167 592.8 689 50.4
Lalb_Chr25g0279551 Lupinus albus HOM05D004705 ORTHO05D005595 5.4e-164 582.4 776 46.5
arahy.Tifrunner.gnm1.ann1.AD4PBH Arachis hypogaea HOM05D004705 ORTHO05D005595 3.8e-162 576.2 785 47.9
Os01g0176500 Oryza sativa ssp. japonica HOM05D004705 ORTHO05D005595 2.5e-161 573.5 916 41.6
ATR0083G057 Amborella trichopoda HOM05D004705 ORTHO05D005595 5.2e-159 565.8 859 42.7
Zm00001eb122560 Zea mays HOM05D004705 ORTHO05D005595 9.8e-158 561.6 886 43.0
CDE01G0719 Ceratophyllum demersum HOM05D004705 ORTHO05D005595 1.5e-153 547.7 726 45.6
unitig_61.g26415 Utricularia gibba HOM05D004705 ORTHO05D005595 1.3e-141 508.1 484 57.4
THA.LOC104812485 Tarenaya hassleriana HOM05D004705 ORTHO05D005595 2.4e-140 503.8 442 58.4
Ah.01g021140 Amaranthus hybridus HOM05D004705 ORTHO05D005595 4.4e-134 483.0 821 40.2
SEGI_27484 Sequoiadendron giganteum HOM05D004705 ORTHO05D005595 8.7e-122 442.2 753 39.4
SEGI_13982 Sequoiadendron giganteum HOM05D004705 ORTHO05D005595 6.4e-109 399.4 482 47.3
MBI01_g15493_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 3.0e-98 364.0 791 35.3
Actinidia16007 Actinidia chinensis HOM05D004705 ORTHO05D005595 3.0e-90 337.4 300 59.3
Pp3c8_15560 Physcomitrium patens HOM05D004705 ORTHO05D005595 1.5e-89 335.1 482 41.5
AagrBONN_evm.TU.Sc2ySwM_228.3613 Anthoceros agrestis HOM05D004705 ORTHO05D005595 3.7e-88 330.5 670 35.7
Pp3c13_19170 Physcomitrium patens HOM05D004705 ORTHO05D005595 1.8e-87 328.2 488 41.4
Pp3c23_2990 Physcomitrium patens HOM05D004705 ORTHO05D005595 6.9e-87 326.2 481 41.4
Pp3c23_18290 Physcomitrium patens HOM05D004705 ORTHO05D005595 1.1e-81 308.9 435 40.7
CDE02G1329 Ceratophyllum demersum HOM05D004705 ORTHO05D005595 1.7e-80 305.1 520 38.1
MBI04_g47892_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 1.4e-79 302.0 541 42.3
Pp3c20_1400 Physcomitrium patens HOM05D004705 ORTHO05D005595 5.9e-78 296.6 485 37.3
Pp3c20_1403 Physcomitrium patens HOM05D004705 ORTHO05D005595 5.9e-78 296.6 485 37.3
Pp3c24_17130 Physcomitrium patens HOM05D004705 ORTHO05D005595 7.7e-78 296.2 467 41.3
Pp3c8_22450 Physcomitrium patens HOM05D004705 ORTHO05D005595 5.0e-77 293.5 483 37.7
Lj8C335T16 Lonicera japonica HOM05D004705 ORTHO05D005595 2.9e-69 267.7 384 45.1
SHI09686 Sapria himalayana HOM05D004705 ORTHO05D005595 7.0e-63 246.5 698 34.0
SMO147G0411 Selaginella moellendorffii HOM05D004705 ORTHO05D005595 7.5e-57 226.5 196 53.6
Actinidia16006 Actinidia chinensis HOM05D004705 ORTHO05D005595 7.5e-49 199.9 431 38.1
Actinidia08822 Actinidia chinensis HOM05D004705 ORTHO05D005595 2.9e-45 188.0 204 55.4
Nitab4.5_0000410g0350 Nicotiana tabacum HOM05D004705 ORTHO05D005595 1.9e-44 185.3 435 36.3
BcaC09g48527 Brassica carinata HOM05D004705 ORTHO05D005595 4.0e-26 124.4 92 57.6
Medtr1g107505 Medicago truncatula HOM05D004705 ORTHO05D005595 4.7e-19 100.9 71 67.6
GSVIVG01017207001 Vitis vinifera HOM05D029100 ORTHO05D016439 1.3e-16 92.8 105 46.7
unitig_26.g8886 Utricularia gibba HOM05D004705 ORTHO05D005595 1.1e-15 89.7 75 60.0
MBI04_g47893_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 3.0e-13 81.6 208 30.8
FAN08G3635 Fragaria x ananassa HOM05D004705 ORTHO05D000113 3.6e-11 74.7 74 48.6
FAN15G3749 Fragaria x ananassa HOM05D005026 ORTHO05D005981 3.6e-11 74.7 74 48.6
FAN21G1601 Fragaria x ananassa HOM05D000031 ORTHO05D000030 2.6e-09 68.6 53 52.8
Medtr1g041460 Medicago truncatula HOM05D004705 ORTHO05D005595 7.6e-09 67.0 49 67.3
Cpa.g.c42332 Carica papaya HOM05D004705 ORTHO05D005595 1.3e-08 66.2 53 52.8
FAN07G2703 Fragaria x ananassa HOM05D004705 ORTHO05D005595 4.9e-08 64.3 82 39.0


User provided reference genes

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