Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc04_g03540 Coffea canephora HOM05D005672 ORTHO05D003038 1.0e-63 246.5 119 100.0
SalBow2G2205 Salvia bowleyana HOM05D005672 ORTHO05D003038 9.3e-41 170.2 121 69.4
Oeu006796.1 Olea europaea HOM05D005672 ORTHO05D003038 6.0e-40 167.5 119 67.2
MSTRG.22696 Avicennia marina HOM05D005672 ORTHO05D003038 3.9e-39 164.9 120 65.0
Migut.I00857 Erythranthe guttata HOM05D005672 ORTHO05D003038 4.3e-38 161.4 110 68.2
Peaxi162Scf00015g00326 Petunia axillaris HOM05D005672 ORTHO05D003038 6.9e-36 154.1 120 58.3
PGSC0003DMG400016538 Solanum tuberosum HOM05D005672 ORTHO05D003038 3.2e-33 145.2 126 54.0
Solyc06g066750.3 Solanum lycopersicum HOM05D005672 ORTHO05D003038 1.6e-32 142.9 126 53.2
Sopen06g025030 Solanum pennellii HOM05D005672 ORTHO05D003038 2.1e-32 142.5 126 53.2
Nitab4.5_0000351g0210 Nicotiana tabacum HOM05D005672 ORTHO05D003038 7.9e-32 140.6 136 53.7
CAN.G395.17 Capsicum annuum HOM05D005672 ORTHO05D003038 1.8e-31 139.4 131 51.9
Nitab4.5_0002327g0030 Nicotiana tabacum HOM05D005672 ORTHO05D003038 3.9e-31 138.3 134 50.7
Actinidia14259 Actinidia chinensis HOM05D005672 ORTHO05D003038 2.9e-26 122.1 119 49.6
Actinidia02490 Actinidia chinensis HOM05D005672 ORTHO05D003038 5.0e-26 121.3 121 50.4
HanXRQChr10g0314951 Helianthus annuus HOM05D005672 ORTHO05D003038 8.4e-26 120.6 117 49.6
Actinidia01798 Actinidia chinensis HOM05D005672 ORTHO05D003038 1.4e-25 119.8 108 50.0
HanXRQChr14g0455911 Helianthus annuus HOM05D005672 ORTHO05D003038 3.2e-25 118.6 111 49.5
SGA_v2.0_scaffold5G02600 Striga asiatica HOM05D005672 ORTHO05D003038 3.2e-25 118.6 81 64.2
unitig_21.g20351 Utricularia gibba HOM05D005672 ORTHO05D003038 3.2e-25 118.6 115 49.6
DCAR_016224 Daucus carota HOM05D005672 ORTHO05D003038 4.2e-25 118.2 117 49.6
Thecc.06G059000 Theobroma cacao HOM05D005672 ORTHO05D003038 5.5e-25 117.9 114 50.0
Actinidia32765 Actinidia chinensis HOM05D005672 ORTHO05D003038 7.2e-25 117.5 108 48.1
ECA234G3627 Erigeron canadensis HOM05D005672 ORTHO05D003038 1.2e-24 116.7 93 54.8
Duzib160G0695 Durio zibethinus HOM05D005672 ORTHO05D003038 2.1e-24 115.9 109 49.5
Eucgr.L03103 Eucalyptus grandis HOM05D005672 ORTHO05D003038 4.6e-24 114.8 108 51.9
Eucgr.J03010 Eucalyptus grandis HOM05D005672 ORTHO05D003038 7.9e-24 114.0 108 49.1
Dinv30519 Davidia involucrata HOM05D005672 ORTHO05D003038 1.0e-23 113.6 96 58.3
Lsat_1_v5_gn_5_129980 Lactuca sativa HOM05D005672 ORTHO05D003038 1.3e-23 113.2 121 46.3
Solyc03g120290.3 Solanum lycopersicum HOM05D005672 ORTHO05D003038 1.3e-23 113.2 119 48.7
Thecc.06G084400 Theobroma cacao HOM05D005672 ORTHO05D003038 3.0e-23 112.1 113 47.8
MD09G1214500 Malus domestica HOM05D005672 ORTHO05D003038 5.1e-23 111.3 115 48.7
FAN05G0478 Fragaria x ananassa HOM05D005672 ORTHO05D003038 2.5e-22 109.0 105 47.6
Prupe.3G073800 Prunus persica HOM05D005672 ORTHO05D003038 3.3e-22 108.6 113 49.6
TAR624G0127 Trochodendron aralioides HOM05D005672 ORTHO05D003038 5.7e-22 107.8 121 47.1
vmacro18924 Vaccinium macrocarpon HOM05D005672 ORTHO05D003038 7.4e-22 107.5 127 46.5
Sopen03g039180 Solanum pennellii HOM05D005672 ORTHO05D003038 1.3e-21 106.7 123 47.2
Manes.04G122400 Manihot esculenta HOM05D005672 ORTHO05D003038 1.6e-21 106.3 117 44.4
CAN.G438.58 Capsicum annuum HOM05D005672 ORTHO05D003038 3.7e-21 105.1 123 44.7
Peaxi162Scf00207g00940 Petunia axillaris HOM05D005672 ORTHO05D003038 1.1e-20 103.6 127 47.2
Manes.04G122300 Manihot esculenta HOM05D005672 ORTHO05D003038 2.4e-20 102.4 116 44.0
Manes.04G122200 Manihot esculenta HOM05D005672 ORTHO05D003038 3.1e-20 102.1 116 44.0
Prupe.3G072900 Prunus persica HOM05D005672 ORTHO05D003038 6.9e-20 100.9 115 43.5
Thecc.06G084800 Theobroma cacao HOM05D005672 ORTHO05D003038 3.4e-19 98.6 115 45.2
Hund25654 Selenicereus undatus HOM05D005672 ORTHO05D003038 5.9e-19 97.8 112 42.0
Thecc.06G084700 Theobroma cacao HOM05D005672 ORTHO05D003038 7.7e-19 97.4 114 46.5
ECA232G2097 Erigeron canadensis HOM05D005672 ORTHO05D003038 1.3e-18 96.7 112 44.6
Prupe.3G072800 Prunus persica HOM05D005672 ORTHO05D003038 6.5e-18 94.4 117 40.2
Duzib192G0281 Durio zibethinus HOM05D005672 ORTHO05D003038 1.4e-17 93.2 112 42.0
Duzib192G0432 Durio zibethinus HOM05D005672 ORTHO05D003038 1.9e-17 92.8 104 40.4
Duzib192G0507 Durio zibethinus HOM05D005672 ORTHO05D003038 1.9e-17 92.8 104 40.4
Duzib192G0711 Durio zibethinus HOM05D005672 ORTHO05D003038 1.9e-17 92.8 104 40.4
Ciclev10027568m.g Citrus clementina HOM05D005672 ORTHO05D003038 3.2e-17 92.0 116 44.8
Prupe.6G180200 Prunus persica HOM05D005672 ORTHO05D003038 4.2e-17 91.7 114 40.4
QL05p025003 Quercus lobata HOM05D005672 ORTHO05D003038 4.2e-17 91.7 99 46.5
Prupe.3G072700 Prunus persica HOM05D005672 ORTHO05D003038 5.5e-17 91.3 114 40.4
MD17G1196900 Malus domestica HOM05D005672 ORTHO05D003038 1.2e-16 90.1 118 39.0
DCAR_026309 Daucus carota HOM05D005672 ORTHO05D003038 1.6e-16 89.7 102 42.2
Dinv30521 Davidia involucrata HOM05D005672 ORTHO05D003038 1.6e-16 89.7 116 41.4
Duzib192G0747 Durio zibethinus HOM05D005672 ORTHO05D003038 4.6e-16 88.2 111 40.5
Thecc.06G054500 Theobroma cacao HOM05D005672 ORTHO05D003038 6.1e-16 87.8 107 43.9
CiPaw.02G152000 Carya illinoinensis HOM05D005672 ORTHO05D003038 7.9e-16 87.4 118 39.8
Duzib192G0991 Durio zibethinus HOM05D005672 ORTHO05D003038 7.9e-16 87.4 107 42.1
Atru.chr1.3244 Acer truncatum HOM05D005672 ORTHO05D003038 1.1e-14 83.6 88 48.9
ClCG09G002230 Citrullus lanatus HOM05D005672 ORTHO05D003038 1.5e-14 83.2 111 40.5
Ciclev10026803m.g Citrus clementina HOM05D005672 ORTHO05D003038 1.5e-14 83.2 113 39.8
Gorai.006G099200 Gossypium raimondii HOM05D005672 ORTHO05D003038 1.5e-14 83.2 107 42.1
Sed0001381 Sechium edule HOM05D005672 ORTHO05D003038 2.5e-14 82.4 107 38.3
CsaV3_7G033060 Cucumis sativus L. HOM05D005672 ORTHO05D003038 3.3e-14 82.0 112 38.4
Gohir.D09G083600 Gossypium hirsutum HOM05D005672 ORTHO05D003038 3.3e-14 82.0 107 42.1
Nn2g11778 Nelumbo nucifera HOM05D005672 ORTHO05D003038 4.3e-14 81.6 114 39.5
PSO339G2623 Papaver somniferum HOM05D007482 ORTHO05D003038 5.7e-14 81.3 115 38.3
Manes.04G121900 Manihot esculenta HOM05D005672 ORTHO05D003038 1.3e-13 80.1 117 39.3
Manes.04G122000 Manihot esculenta HOM05D005672 ORTHO05D003038 1.3e-13 80.1 117 39.3
THA.LOC104823573 Tarenaya hassleriana HOM05D007482 ORTHO05D003038 2.8e-13 79.0 114 38.6
Manes.04G122100 Manihot esculenta HOM05D005672 ORTHO05D003038 3.7e-13 78.6 117 38.5
CSS0026145 Camellia sinensis var. sinensis HOM05D005672 ORTHO05D003038 4.8e-13 78.2 67 52.2
PSO339G0096 Papaver somniferum HOM05D007482 ORTHO05D003038 4.8e-13 78.2 116 37.9
Eucgr.J03009 Eucalyptus grandis HOM05D005672 ORTHO05D003038 6.3e-13 77.8 107 39.3
Gohir.A09G083600 Gossypium hirsutum HOM05D005672 ORTHO05D003038 8.2e-13 77.4 119 36.1
Gohir.D09G083500 Gossypium hirsutum HOM05D005672 ORTHO05D003038 8.2e-13 77.4 119 36.1
Ciclev10027446m.g Citrus clementina HOM05D005672 ORTHO05D003038 1.1e-12 77.0 117 41.9
Duzib235G0754 Durio zibethinus HOM05D005672 ORTHO05D003038 1.1e-12 77.0 122 34.4
FvH4_6g30990 Fragaria vesca HOM05D005672 ORTHO05D003038 1.1e-12 77.0 118 39.0
BcaB08g34260 Brassica carinata HOM05D007482 ORTHO05D003038 1.8e-12 76.3 117 35.9
Gorai.006G099100 Gossypium raimondii HOM05D005672 ORTHO05D003038 1.8e-12 76.3 119 35.3
Prupe.3G072600 Prunus persica HOM05D005672 ORTHO05D003038 2.4e-12 75.9 100 39.0
PSO339G1026 Papaver somniferum HOM05D007482 ORTHO05D003038 5.3e-12 74.7 115 36.5
Nn8g39245 Nelumbo nucifera HOM05D005672 ORTHO05D003038 1.2e-11 73.6 111 36.0
AL1G24160 Arabidopsis lyrata HOM05D007482 ORTHO05D003038 2.0e-11 72.8 105 38.1
AT1G12663 Arabidopsis thaliana HOM05D007482 ORTHO05D003038 2.0e-11 72.8 109 38.5
AL1G24130 Arabidopsis lyrata HOM05D007482 ORTHO05D003038 2.6e-11 72.4 110 39.1
Sp1g11250 Schrenkiella parvula HOM05D007482 ORTHO05D003038 2.6e-11 72.4 117 39.3
Gohir.A09G083700 Gossypium hirsutum HOM05D005672 ORTHO05D003038 4.5e-11 71.6 87 40.2
PSO339G4707 Papaver somniferum HOM05D007482 ORTHO05D003038 4.5e-11 71.6 115 35.7
COL.COLO4_30353 Corchorus olitorius HOM05D005672 ORTHO05D003038 7.7e-11 70.9 75 44.0
Nn8g39244 Nelumbo nucifera HOM05D005672 ORTHO05D003038 1.0e-10 70.5 103 37.9
PSO648G0129 Papaver somniferum HOM05D007482 ORTHO05D003038 1.0e-10 70.5 114 35.1
Prupe.3G073200 Prunus persica HOM05D005672 ORTHO05D003038 1.0e-10 70.5 117 36.8
C05p30030 Brassica napus HOM05D007482 ORTHO05D003038 1.3e-10 70.1 122 37.7
BolC5t31740H Brassica oleracea HOM05D007482 ORTHO05D003038 1.3e-10 70.1 122 37.7
Sp1g11270 Schrenkiella parvula HOM05D007482 ORTHO05D003038 1.7e-10 69.7 116 38.8
Ciclev10027058m.g Citrus clementina HOM05D005672 ORTHO05D003038 2.2e-10 69.3 87 42.5
Thhalv10023017m.g Eutrema salsugineum HOM05D007482 ORTHO05D003038 2.2e-10 69.3 111 39.6
Nitab4.5_0000671g0010 Nicotiana tabacum HOM05D005672 ORTHO05D003038 2.2e-10 69.3 59 54.2
A09p35330 Brassica napus HOM05D007482 ORTHO05D003038 2.9e-10 68.9 123 39.8
A09p63700 Brassica napus HOM05D007482 ORTHO05D003038 3.8e-10 68.6 117 36.8
MD09G1214600 Malus domestica HOM05D005672 ORTHO05D003038 3.8e-10 68.6 121 36.4
MELO3C023361.2 Cucumis melo HOM05D005672 ORTHO05D003038 5.0e-10 68.2 100 36.0
BraA09t41718Z Brassica rapa HOM05D007482 ORTHO05D003038 6.5e-10 67.8 117 36.8
CARHR012970 Cardamine hirsuta HOM05D007482 ORTHO05D003038 6.5e-10 67.8 120 32.5
Ciclev10027444m.g Citrus clementina HOM05D005672 ORTHO05D003038 6.5e-10 67.8 114 37.7
BcaB08g34258 Brassica carinata HOM05D007482 ORTHO05D003038 8.5e-10 67.4 116 37.9
C08p47190 Brassica napus HOM05D007482 ORTHO05D003038 8.5e-10 67.4 111 38.7
CARHR012960 Cardamine hirsuta HOM05D007482 ORTHO05D003038 8.5e-10 67.4 120 35.8
Nn8g39240 Nelumbo nucifera HOM05D005672 ORTHO05D003038 1.1e-09 67.0 113 37.2
GSVIVG01017351001 Vitis vinifera HOM05D009909 ORTHO05D011748 1.4e-09 66.6 110 30.0
Sed0004960 Sechium edule HOM05D005672 ORTHO05D003038 1.9e-09 66.2 118 31.4
C08p47200 Brassica napus HOM05D007482 ORTHO05D003038 2.5e-09 65.9 117 36.8
Aqoxy7G01810 Aquilegia oxysepala HOM05D005672 ORTHO05D003038 3.2e-09 65.5 115 36.5
Prupe.3G073000 Prunus persica HOM05D005672 ORTHO05D003038 3.2e-09 65.5 112 34.8
BraA09t39063Z Brassica rapa HOM05D007482 ORTHO05D003038 4.2e-09 65.1 123 39.0
Oeu019543.1 Olea europaea HOM05D005672 ORTHO05D003038 4.2e-09 65.1 101 38.6
BcaC05g25121 Brassica carinata HOM05D007482 ORTHO05D003038 5.5e-09 64.7 111 37.8
Sed0013481 Sechium edule HOM05D005672 ORTHO05D003038 9.4e-09 63.9 114 32.5
BcaB08g34257 Brassica carinata HOM05D007482 ORTHO05D003038 2.1e-08 62.8 110 38.2
Nn8g39246 Nelumbo nucifera HOM05D005672 ORTHO05D003038 3.6e-08 62.0 108 33.3
Atru.chr1.3245 Acer truncatum HOM05D005672 ORTHO05D003038 4.7e-08 61.6 99 34.3
CARHR012950 Cardamine hirsuta HOM05D007482 ORTHO05D003038 4.7e-08 61.6 111 33.3
Duzib235G0878 Durio zibethinus HOM05D005672 ORTHO05D003038 6.1e-08 61.2 104 33.7
Potri.003G056450 Populus trichocarpa HOM05D005672 ORTHO05D003038 6.1e-08 61.2 97 40.2
PGSC0003DMG400002652 Solanum tuberosum HOM05D005672 ORTHO05D003038 6.1e-08 61.2 105 36.2
BraA05t21798Z Brassica rapa HOM05D007482 ORTHO05D003038 1.0e-07 60.5 110 38.2
Carub.0004s0495 Capsella rubella HOM05D007482 ORTHO05D003038 1.0e-07 60.5 124 33.1
PGR031G0360 Punica granatum HOM05D005672 ORTHO05D003038 1.0e-07 60.5 111 33.3
PGR031G3744 Punica granatum HOM05D005672 ORTHO05D003038 1.0e-07 60.5 111 33.3
BolC5t33183H Brassica oleracea HOM05D007482 ORTHO05D003038 1.4e-07 60.1 110 37.3
A05p29150 Brassica napus HOM05D007482 ORTHO05D003038 1.8e-07 59.7 110 37.3
C05p44560 Brassica napus HOM05D007482 ORTHO05D003038 2.3e-07 59.3 110 36.4
MELO3C023363.2 Cucumis melo HOM05D005672 ORTHO05D003038 3.0e-07 58.9 84 29.8
BcaC05g28380 Brassica carinata HOM05D007482 ORTHO05D003038 3.9e-07 58.5 107 37.4
Sed0015260 Sechium edule HOM05D005672 ORTHO05D003038 3.9e-07 58.5 113 33.6
CARHR035990 Cardamine hirsuta HOM05D007482 ORTHO05D003038 1.1e-06 57.0 122 34.4
CARHR182820 Cardamine hirsuta HOM05D007482 ORTHO05D003038 1.1e-06 57.0 86 34.9
ClCG09G002220 Citrullus lanatus HOM05D005672 ORTHO05D003038 1.1e-06 57.0 97 33.0
Nn2g15314 Nelumbo nucifera HOM05D005672 ORTHO05D003038 1.1e-06 57.0 103 36.9
Ciclev10026944m.g Citrus clementina HOM05D005672 ORTHO05D003038 1.5e-06 56.6 112 33.9
Thhalv10009322m.g Eutrema salsugineum HOM05D007482 ORTHO05D003038 1.5e-06 56.6 101 35.6
BolC8t52260H Brassica oleracea HOM05D007482 ORTHO05D003038 4.4e-06 55.1 132 30.3
Carub.0001s1238 Capsella rubella HOM05D007482 ORTHO05D003038 5.7e-06 54.7 112 34.8
Thhalv10009133m.g Eutrema salsugineum HOM05D007482 ORTHO05D003038 5.7e-06 54.7 115 33.0
Nn8g39241 Nelumbo nucifera HOM05D005672 ORTHO05D003038 7.4e-06 54.3 115 32.2


User provided reference genes

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