Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc04_g03270 Coffea canephora HOM05D006417 ORTHO05D008113 2.1e-23 111.7 65 100.0
Oeu063955.1 Olea europaea HOM05D006417 ORTHO05D008113 6.5e-20 100.1 63 92.1
HanXRQChr12g0376701 Helianthus annuus HOM05D006417 ORTHO05D008113 9.3e-19 96.3 63 88.9
HanXRQChr04g0096081 Helianthus annuus HOM05D006417 ORTHO05D008113 1.6e-18 95.5 63 87.3
HPP92_003724 Vanilla planifolia HOM05D002497 ORTHO05D002697 1.6e-18 95.5 66 86.4
CiPaw.02G150500 Carya illinoinensis HOM05D006417 ORTHO05D008113 3.5e-18 94.4 63 85.7
Lsat_1_v5_gn_5_130340 Lactuca sativa HOM05D006417 ORTHO05D008113 3.5e-18 94.4 63 85.7
Haze_16401 Corylus avellana HOM05D006417 ORTHO05D008113 7.9e-18 93.2 63 85.7
Dinv38039 Davidia involucrata HOM05D006417 ORTHO05D008113 1.0e-17 92.8 63 85.7
CiPaw.01G238100 Carya illinoinensis HOM05D006417 ORTHO05D008113 1.8e-17 92.0 63 85.7
Peaxi162Scf00034g00611 Petunia axillaris HOM05D006417 ORTHO05D008113 2.3e-17 91.7 63 84.1
Zm00001eb225700 Zea mays HOM05D006417 ORTHO05D008113 2.3e-17 91.7 61 88.5
Ciclev10026914m.g Citrus clementina HOM05D006417 ORTHO05D008113 3.9e-17 90.9 64 85.9
PGSC0003DMG400007579 Solanum tuberosum HOM05D006417 ORTHO05D008113 3.9e-17 90.9 63 84.1
BcaC05g25455 Brassica carinata HOM05D006417 ORTHO05D008113 5.1e-17 90.5 64 85.9
BcaC05g25459 Brassica carinata HOM05D006417 ORTHO05D008113 5.1e-17 90.5 64 85.9
Solyc12g043160.3 Solanum lycopersicum HOM05D006417 ORTHO05D008113 5.1e-17 90.5 63 84.1
BcaC07g38776 Brassica carinata HOM05D006417 ORTHO05D008113 6.7e-17 90.1 64 85.9
BcaC07g41515 Brassica carinata HOM05D006417 ORTHO05D008113 6.7e-17 90.1 64 85.9
A08p31670 Brassica napus HOM05D006417 ORTHO05D008113 6.7e-17 90.1 64 85.9
A09p61510 Brassica napus HOM05D006417 ORTHO05D008113 6.7e-17 90.1 64 85.9
CARHR015790 Cardamine hirsuta HOM05D006417 ORTHO05D008113 6.7e-17 90.1 64 85.9
Sp1g13580 Schrenkiella parvula HOM05D006417 ORTHO05D008113 6.7e-17 90.1 64 85.9
Lj5A59T64 Lonicera japonica HOM05D006417 ORTHO05D008113 8.7e-17 89.7 64 85.9
BcaB03g13069 Brassica carinata HOM05D006417 ORTHO05D008113 1.1e-16 89.4 64 84.4
AL1G27360 Arabidopsis lyrata HOM05D006417 ORTHO05D008113 1.9e-16 88.6 64 84.4
AT1G15270 Arabidopsis thaliana HOM05D006417 ORTHO05D008113 1.9e-16 88.6 64 84.4
Carub.0001s1503 Capsella rubella HOM05D006417 ORTHO05D008113 1.9e-16 88.6 64 84.4
FAN14G4157 Fragaria x ananassa HOM05D006417 ORTHO05D008113 1.9e-16 88.6 64 84.4
MD17G1194100 Malus domestica HOM05D006417 ORTHO05D008113 1.9e-16 88.6 64 85.9
unitig_27.g25076 Utricularia gibba HOM05D006417 ORTHO05D008113 1.9e-16 88.6 64 84.4
ATR0724G030 Amborella trichopoda HOM05D006417 ORTHO05D008113 2.5e-16 88.2 64 82.8
SalBow2G2995 Salvia bowleyana HOM05D006417 ORTHO05D008113 2.5e-16 88.2 64 84.4
Hund06616 Selenicereus undatus HOM05D006417 ORTHO05D008113 2.5e-16 88.2 64 85.9
Aa31LG4G200 Aethionema arabicum HOM05D006417 ORTHO05D008113 3.3e-16 87.8 64 82.8
Gohir.A09G082600 Gossypium hirsutum HOM05D006417 ORTHO05D008113 4.3e-16 87.4 64 82.8
RcHm_v2.0_Chr2g0106421 Rosa chinensis HOM05D006417 ORTHO05D008113 4.3e-16 87.4 64 85.9
Thecc.06G089800 Theobroma cacao HOM05D006417 ORTHO05D008113 4.3e-16 87.4 64 82.8
DCAR_023056 Daucus carota HOM05D006417 ORTHO05D008113 5.7e-16 87.0 61 88.5
FAN02G0035 Fragaria x ananassa HOM05D006417 ORTHO05D008113 5.7e-16 87.0 64 82.8
Hma1.2p1_2039F.1_g312170 Hydrangea macrophylla HOM05D006417 ORTHO05D008113 5.7e-16 87.0 62 83.9
Lj3g0004039 Lotus japonicus HOM05D006417 ORTHO05D008113 5.7e-16 87.0 64 82.8
Lalb_Chr01g0012721 Lupinus albus HOM05D006417 ORTHO05D008113 5.7e-16 87.0 64 82.8
RcHm_v2.0_Chr2g0138111 Rosa chinensis HOM05D006417 ORTHO05D008113 5.7e-16 87.0 64 82.8
TAR626G0232 Trochodendron aralioides HOM05D006417 ORTHO05D008113 5.7e-16 87.0 64 82.8
Aqoxy7G01686 Aquilegia oxysepala HOM05D006417 ORTHO05D008113 7.4e-16 86.7 64 82.8
CANSAT56G0242 Cannabis sativa HOM05D006417 ORTHO05D008113 9.6e-16 86.3 64 82.8
Eucgr.J02983 Eucalyptus grandis HOM05D006417 ORTHO05D008113 9.6e-16 86.3 59 89.8
Gohir.D09G082500 Gossypium hirsutum HOM05D006417 ORTHO05D008113 9.6e-16 86.3 64 81.2
Migut.D01026 Erythranthe guttata HOM05D006417 ORTHO05D008113 1.3e-15 85.9 64 84.4
FAN05G1876 Fragaria x ananassa HOM05D006417 ORTHO05D008113 1.3e-15 85.9 64 81.2
Glyma.08G206000 Glycine max HOM05D006417 ORTHO05D008113 1.3e-15 85.9 64 81.2
Phvul.010G150000 Phaseolus vulgaris HOM05D006417 ORTHO05D008113 1.6e-15 85.5 64 81.2
C08p17070 Brassica napus HOM05D006417 ORTHO05D008113 2.1e-15 85.1 60 85.0
BolC8t49333H Brassica oleracea HOM05D006417 ORTHO05D008113 2.1e-15 85.1 60 85.0
Glyma.07G005600 Glycine max HOM05D006417 ORTHO05D008113 2.1e-15 85.1 64 81.2
MBI06_g06678_MAGBIO Magnolia biondii HOM05D006417 ORTHO05D008113 2.1e-15 85.1 64 79.7
Prupe.3G069900 Prunus persica HOM05D006417 ORTHO05D008113 2.1e-15 85.1 64 79.7
Sc12g0009320 Simmondsia chinensis HOM05D006417 ORTHO05D008113 2.1e-15 85.1 64 84.4
Medtr4g012800 Medicago truncatula HOM05D006417 ORTHO05D008113 2.8e-15 84.7 64 79.7
Psat7g250440 Pisum sativum HOM05D006417 ORTHO05D008113 2.8e-15 84.7 64 79.7
Aqoxy7G03790 Aquilegia oxysepala HOM05D006417 ORTHO05D008113 3.7e-15 84.3 64 81.2
ClCG05G003220 Citrullus lanatus HOM05D006417 ORTHO05D008113 3.7e-15 84.3 64 79.7
COL.COLO4_30395 Corchorus olitorius HOM05D006417 ORTHO05D008113 3.7e-15 84.3 64 82.8
CsaV3_3G010850 Cucumis sativus L. HOM05D006417 ORTHO05D008113 3.7e-15 84.3 64 79.7
Pp3c23_11500 Physcomitrium patens HOM05D006417 ORTHO05D008113 3.7e-15 84.3 66 80.3
Sed0004760 Sechium edule HOM05D006417 ORTHO05D008113 3.7e-15 84.3 64 79.7
Sed0026778 Sechium edule HOM05D006417 ORTHO05D008113 4.8e-15 84.0 64 79.7
FAN09G4522 Fragaria x ananassa HOM05D006417 ORTHO05D008113 6.3e-15 83.6 64 79.7
BolC5t30076H Brassica oleracea HOM05D006417 ORTHO05D008113 8.2e-15 83.2 61 83.6
A06p11260 Brassica napus HOM05D006417 ORTHO05D008113 1.1e-14 82.8 61 83.6
C08p45090 Brassica napus HOM05D006417 ORTHO05D008113 1.1e-14 82.8 61 83.6
BolC8t52055H Brassica oleracea HOM05D006417 ORTHO05D008113 1.1e-14 82.8 61 83.6
BraA06t24306Z Brassica rapa HOM05D006417 ORTHO05D008113 1.1e-14 82.8 61 83.6
BraA09t41524Z Brassica rapa HOM05D006417 ORTHO05D008113 1.1e-14 82.8 61 83.6
ClCG02G009660 Citrullus lanatus HOM05D006417 ORTHO05D008113 1.1e-14 82.8 64 78.1
ECA247G1523 Erigeron canadensis HOM05D001142 ORTHO05D004628 1.1e-14 82.8 54 87.0
Manes.04G124600 Manihot esculenta HOM05D006417 ORTHO05D008113 1.8e-14 82.0 73 75.3
Nn2g11755 Nelumbo nucifera HOM05D006417 ORTHO05D008113 1.8e-14 82.0 66 77.3
SalBow2G0478 Salvia bowleyana HOM05D008308 ORTHO05D008113 1.8e-14 82.0 63 81.0
Atru.chr1.3302 Acer truncatum HOM05D006417 ORTHO05D008113 2.4e-14 81.6 64 76.6
Migut.I00879 Erythranthe guttata HOM05D006417 ORTHO05D008113 2.4e-14 81.6 60 81.7
Glyma.20G047300 Glycine max HOM05D006417 ORTHO05D008113 2.4e-14 81.6 64 78.1
EL10Ac9g22008 Beta vulgaris HOM05D006417 ORTHO05D008113 3.1e-14 81.3 64 78.1
CARHR091200 Cardamine hirsuta HOM05D006417 ORTHO05D008113 5.3e-14 80.5 64 79.7
FAN26G3442 Fragaria x ananassa HOM05D006417 ORTHO05D008113 5.3e-14 80.5 64 82.8
Pp3c24_10010 Physcomitrium patens HOM05D006417 ORTHO05D008113 5.3e-14 80.5 66 77.3
AT3G16040 Arabidopsis thaliana HOM05D006417 ORTHO05D008113 6.9e-14 80.1 64 78.1
C05p50430 Brassica napus HOM05D006417 ORTHO05D008113 6.9e-14 80.1 64 76.6
Potri.001G181800 Populus trichocarpa HOM05D006417 ORTHO05D008113 9.0e-14 79.7 64 76.6
Aa31LG8G3190 Aethionema arabicum HOM05D006417 ORTHO05D008113 1.2e-13 79.3 64 76.6
CAN.G144.3 Capsicum annuum HOM05D006417 ORTHO05D008113 1.2e-13 79.3 58 81.0
Cpa.g.sc41.8 Carica papaya HOM05D006417 ORTHO05D008113 1.2e-13 79.3 70 74.3
Thhalv10022282m.g Eutrema salsugineum HOM05D006417 ORTHO05D008113 1.2e-13 79.3 64 78.1
AL3G28690 Arabidopsis lyrata HOM05D006417 ORTHO05D008113 1.5e-13 79.0 64 76.6
AL810U10020 Arabidopsis lyrata HOM05D006417 ORTHO05D008113 1.5e-13 79.0 64 76.6
CSS0028003 Camellia sinensis var. sinensis HOM05D006417 ORTHO05D008113 1.5e-13 79.0 58 82.8
Gorai.006G098200 Gossypium raimondii HOM05D006417 ORTHO05D008113 1.5e-13 79.0 74 70.3
Lj3g0012949 Lotus japonicus HOM05D006417 ORTHO05D008113 3.4e-13 77.8 65 78.5
Carub.0003s1577 Capsella rubella HOM05D006417 ORTHO05D008113 4.5e-13 77.4 64 75.0
GSVIVG01017091001 Vitis vinifera HOM05D006417 ORTHO05D008113 4.5e-13 77.4 64 79.7
SGA_v2.0_scaffold37G14829 Striga asiatica HOM05D006417 ORTHO05D008113 7.6e-13 76.6 63 77.8
AagrBONN_evm.TU.Sc2ySwM_117.2290 Anthoceros agrestis HOM05D006417 ORTHO05D008113 1.0e-12 76.3 64 73.4
Sp3g14390 Schrenkiella parvula HOM05D006417 ORTHO05D008113 1.0e-12 76.3 64 75.0
Thhalv10009202m.g Eutrema salsugineum HOM05D006417 ORTHO05D008113 1.7e-12 75.5 92 59.8
Mapoly0091s0070 Marchantia polymorpha HOM05D006417 ORTHO05D008113 2.2e-12 75.1 68 73.5
Lsat_1_v5_gn_1_35180 Lactuca sativa HOM05D006417 ORTHO05D008113 5.0e-12 73.9 53 79.2
BcaNung06587 Brassica carinata HOM05D006417 ORTHO05D008113 6.5e-12 73.6 60 76.7
FAN19G1924 Fragaria x ananassa HOM05D006417 ORTHO05D008113 6.5e-12 73.6 54 85.2
FvH4_1g16510 Fragaria vesca HOM05D006417 ORTHO05D008113 8.4e-12 73.2 54 85.2
A05p33430 Brassica napus HOM05D006417 ORTHO05D008113 1.4e-11 72.4 62 72.6
arahy.Tifrunner.gnm1.ann1.6441EL Arachis hypogaea HOM05D006417 ORTHO05D008113 1.9e-11 72.0 89 58.4
DCAR_007563 Daucus carota HOM05D006417 ORTHO05D008113 4.2e-11 70.9 64 75.0
DCAR_026325 Daucus carota HOM05D006417 ORTHO05D008113 4.2e-11 70.9 64 75.0
BcaC05g28917 Brassica carinata HOM05D006417 ORTHO05D008113 7.2e-11 70.1 73 65.8
Glyma.14G136351 Glycine max HOM05D006417 ORTHO05D008113 3.5e-10 67.8 60 71.7
DCAR_002649 Daucus carota HOM05D006417 ORTHO05D008113 1.8e-09 65.5 59 74.6
Cre10.g438600 Chlamydomonas reinhardtii HOM05D006417 ORTHO05D008113 6.7e-09 63.5 61 63.9
Nitab4.5_0004241g0020 Nicotiana tabacum HOM05D006417 ORTHO05D008113 1.1e-08 62.8 58 67.2
Nitab4.5_0002859g0060 Nicotiana tabacum HOM05D006417 ORTHO05D008113 1.5e-08 62.4 63 63.5
ClCG11G012700 Citrullus lanatus HOM05D006417 ORTHO05D008113 1.1e-06 56.2 64 64.1
CAN.G710.59 Capsicum annuum HOM05D006417 ORTHO05D115303 5.3e-06 53.9 43 74.4


User provided reference genes

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