Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc04_g03260 Coffea canephora HOM05D005853 ORTHO05D007308 6.7e-55 217.6 156 100.0
Solyc04g008710.4 Solanum lycopersicum HOM05D005853 ORTHO05D007308 5.9e-19 98.2 116 53.4
Nitab4.5_0001983g0030 Nicotiana tabacum HOM05D005853 ORTHO05D007308 7.7e-19 97.8 113 56.6
Nitab4.5_0000129g0220 Nicotiana tabacum HOM05D005853 ORTHO05D007308 2.9e-18 95.9 115 55.7
Eucgr.J02982 Eucalyptus grandis HOM05D005853 ORTHO05D007308 1.2e-16 90.5 62 74.2
Sopen04g003890 Solanum pennellii HOM05D005853 ORTHO05D007308 1.2e-16 90.5 121 49.6
A07p03810 Brassica napus HOM05D005853 ORTHO05D007308 2.1e-16 89.7 102 53.9
BraA07t28175Z Brassica rapa HOM05D005853 ORTHO05D007308 4.7e-16 88.6 111 52.3
PGSC0003DMG400025300 Solanum tuberosum HOM05D005853 ORTHO05D007308 8.0e-16 87.8 115 52.2
TAR624G1380 Trochodendron aralioides HOM05D005853 ORTHO05D007308 8.0e-16 87.8 57 77.2
BcaC06g36242 Brassica carinata HOM05D005853 ORTHO05D007308 1.0e-15 87.4 103 53.4
C07p06090 Brassica napus HOM05D005853 ORTHO05D007308 1.0e-15 87.4 103 53.4
BolC7t41022H Brassica oleracea HOM05D005853 ORTHO05D007308 1.0e-15 87.4 103 53.4
ClCG06G008520 Citrullus lanatus HOM05D005853 ORTHO05D007308 1.0e-15 87.4 45 88.9
Peaxi162Scf00329g00432 Petunia axillaris HOM05D005853 ORTHO05D007308 1.0e-15 87.4 111 50.5
Aa31LG8G14610 Aethionema arabicum HOM05D005853 ORTHO05D007308 1.8e-15 86.7 92 55.4
MD02G1047200 Malus domestica HOM05D005853 ORTHO05D007308 3.0e-15 85.9 46 84.8
PGR102G2925 Punica granatum HOM05D005853 ORTHO05D007308 3.9e-15 85.5 49 81.6
TAR636G2025 Trochodendron aralioides HOM05D005853 ORTHO05D007308 3.9e-15 85.5 44 93.2
AT2G17240 Arabidopsis thaliana HOM05D005853 ORTHO05D007308 6.7e-15 84.7 47 83.0
Carub.0003s3118 Capsella rubella HOM05D005853 ORTHO05D007308 6.7e-15 84.7 47 83.0
CiPaw.04G164300 Carya illinoinensis HOM05D005853 ORTHO05D007308 6.7e-15 84.7 48 79.2
FvH4_1g04830 Fragaria vesca HOM05D000050 ORTHO05D009634 6.7e-15 84.7 45 86.7
FAN19G0481 Fragaria x ananassa HOM05D000050 ORTHO05D009634 6.7e-15 84.7 45 86.7
FAN26G1381 Fragaria x ananassa HOM05D000050 ORTHO05D009634 6.7e-15 84.7 45 86.7
MSTRG.11072 Avicennia marina HOM05D005853 ORTHO05D007308 8.8e-15 84.3 114 53.5
Gohir.A05G022900 Gossypium hirsutum HOM05D005853 ORTHO05D007308 8.8e-15 84.3 44 88.6
Gohir.D05G024300 Gossypium hirsutum HOM05D005853 ORTHO05D007308 8.8e-15 84.3 44 88.6
Gorai.009G024400 Gossypium raimondii HOM05D005853 ORTHO05D007308 8.8e-15 84.3 44 88.6
Gorai.009G024500 Gossypium raimondii HOM05D005853 ORTHO05D007308 8.8e-15 84.3 44 88.6
VMungo0331G1451 Vigna mungo HOM05D005853 ORTHO05D007308 1.1e-14 84.0 39 97.4
Ciclev10009718m.g Citrus clementina HOM05D005853 ORTHO05D007308 1.5e-14 83.6 45 86.7
Gohir.D05G024400 Gossypium hirsutum HOM05D005853 ORTHO05D007308 1.5e-14 83.6 44 88.6
Lalb_Chr22g0351311 Lupinus albus HOM05D005853 ORTHO05D007308 1.5e-14 83.6 39 94.9
Manes.03G020200 Manihot esculenta HOM05D005853 ORTHO05D007308 1.5e-14 83.6 50 78.0
QL02p085450 Quercus lobata HOM05D005853 ORTHO05D007308 1.5e-14 83.6 60 66.7
THA.LOC104808760 Tarenaya hassleriana HOM05D005853 ORTHO05D007308 1.5e-14 83.6 47 83.0
Thecc.09G110800 Theobroma cacao HOM05D005853 ORTHO05D007308 1.5e-14 83.6 45 86.7
Ah.01g021430 Amaranthus hybridus HOM05D005853 ORTHO05D007308 2.0e-14 83.2 112 54.5
Haze_25712 Corylus avellana HOM05D005853 ORTHO05D007308 2.0e-14 83.2 40 92.5
Migut.I00880 Erythranthe guttata HOM05D005853 ORTHO05D007308 2.0e-14 83.2 111 49.5
Gohir.A05G022800 Gossypium hirsutum HOM05D005853 ORTHO05D007308 2.0e-14 83.2 44 86.4
Gohir.D06G060700 Gossypium hirsutum HOM05D005853 ORTHO05D007308 2.0e-14 83.2 50 80.0
Gorai.010G070700 Gossypium raimondii HOM05D005853 ORTHO05D007308 2.0e-14 83.2 50 80.0
Lj3g0010943 Lotus japonicus HOM05D005853 ORTHO05D007308 2.0e-14 83.2 38 100.0
MBI13_g01620_MAGBIO Magnolia biondii HOM05D005853 ORTHO05D007308 2.0e-14 83.2 93 55.9
AL3G50100 Arabidopsis lyrata HOM05D005853 ORTHO05D007308 2.6e-14 82.8 47 80.9
BcaB08g34716 Brassica carinata HOM05D005853 ORTHO05D007308 2.6e-14 82.8 111 49.5
BcaC01g02942 Brassica carinata HOM05D005853 ORTHO05D007308 2.6e-14 82.8 47 80.9
C03p58060 Brassica napus HOM05D005853 ORTHO05D007308 2.6e-14 82.8 47 80.9
BolC3t18080H Brassica oleracea HOM05D005853 ORTHO05D007308 2.6e-14 82.8 47 80.9
Glyma.07G005500 Glycine max HOM05D005853 ORTHO05D007308 2.6e-14 82.8 39 94.9
Glyma.08G205900 Glycine max HOM05D005853 ORTHO05D007308 2.6e-14 82.8 39 94.9
Phvul.010G149900 Phaseolus vulgaris HOM05D005853 ORTHO05D007308 2.6e-14 82.8 39 94.9
SGA_v2.0_scaffold5G02572 Striga asiatica HOM05D005853 ORTHO05D007308 2.6e-14 82.8 112 46.4
MSTRG.22678 Avicennia marina HOM05D005853 ORTHO05D007308 3.3e-14 82.4 111 51.4
Thecc.06G089900 Theobroma cacao HOM05D005853 ORTHO05D007308 4.4e-14 82.0 39 97.4
Oeu033499.2 Olea europaea HOM05D005853 ORTHO05D007308 5.7e-14 81.6 44 84.1
CDE04G2734 Ceratophyllum demersum HOM05D005853 ORTHO05D007308 7.4e-14 81.3 39 92.3
Duzib187G1793 Durio zibethinus HOM05D005853 ORTHO05D007308 7.4e-14 81.3 50 78.0
Gohir.A06G062400 Gossypium hirsutum HOM05D005853 ORTHO05D007308 7.4e-14 81.3 50 78.0
ATR0724G055 Amborella trichopoda HOM05D005853 ORTHO05D007308 9.7e-14 80.9 66 62.1
Prupe.7G230800 Prunus persica HOM05D005853 ORTHO05D007308 9.7e-14 80.9 43 86.0
AT3G24506 Arabidopsis thaliana HOM05D005853 ORTHO05D007308 1.3e-13 80.5 110 53.6
CDE07G2010 Ceratophyllum demersum HOM05D005853 ORTHO05D007308 1.3e-13 80.5 85 55.3
ECA240G1876 Erigeron canadensis HOM05D005853 ORTHO05D007308 1.3e-13 80.5 97 48.5
Thhalv10022893m.g Eutrema salsugineum HOM05D005853 ORTHO05D007308 1.3e-13 80.5 85 55.3
RcHm_v2.0_Chr2g0090481 Rosa chinensis HOM05D005853 ORTHO05D007308 1.3e-13 80.5 45 82.2
AL3G39990 Arabidopsis lyrata HOM05D005853 ORTHO05D007308 1.7e-13 80.1 46 80.4
Carub.0003s2483 Capsella rubella HOM05D005853 ORTHO05D007308 1.7e-13 80.1 110 51.8
Prupe.3G069800 Prunus persica HOM05D005853 ORTHO05D007308 1.7e-13 80.1 55 70.9
Sp3g30580 Schrenkiella parvula HOM05D005853 ORTHO05D007308 1.7e-13 80.1 113 51.3
GSVIVG01017090001 Vitis vinifera HOM05D005853 ORTHO05D007308 1.7e-13 80.1 36 100.0
DCAR_028712 Daucus carota HOM05D005181 ORTHO05D006086 2.2e-13 79.7 93 52.7
unitig_22.g5469 Utricularia gibba HOM05D005853 ORTHO05D007308 2.2e-13 79.7 62 67.7
CSS0027693 Camellia sinensis var. sinensis HOM05D005853 ORTHO05D007308 2.8e-13 79.3 84 58.3
THA.LOC104804586 Tarenaya hassleriana HOM05D005853 ORTHO05D007308 2.8e-13 79.3 109 49.5
BcaB03g16471 Brassica carinata HOM05D005853 ORTHO05D007308 3.7e-13 79.0 103 50.5
A06p34130 Brassica napus HOM05D005853 ORTHO05D007308 3.7e-13 79.0 111 49.5
BraA06t26346Z Brassica rapa HOM05D005853 ORTHO05D007308 3.7e-13 79.0 111 49.5
Hma1.2p1_1455F.1_g284500 Hydrangea macrophylla HOM05D005853 ORTHO05D007308 3.7e-13 79.0 125 49.6
Manes.16G116400 Manihot esculenta HOM05D005853 ORTHO05D007308 3.7e-13 79.0 46 80.4
TWI34G0492 Tripterygium wilfordii HOM05D005853 ORTHO05D007308 3.7e-13 79.0 47 74.5
Nn2g11754 Nelumbo nucifera HOM05D005853 ORTHO05D007308 4.8e-13 78.6 40 95.0
Potri.018G079700 Populus trichocarpa HOM05D005853 ORTHO05D007308 4.8e-13 78.6 111 47.7
Zm00001eb247070 Zea mays HOM05D005853 ORTHO05D007308 6.3e-13 78.2 60 63.3
CANSAT56G2684 Cannabis sativa HOM05D005853 ORTHO05D007308 8.2e-13 77.8 36 97.2
Sed0019935 Sechium edule HOM05D005853 ORTHO05D007308 8.2e-13 77.8 107 50.5
PSO210G7285 Papaver somniferum HOM05D005853 ORTHO05D007308 1.1e-12 77.4 43 83.7
arahy.Tifrunner.gnm1.ann1.84WEKL Arachis hypogaea HOM05D005853 ORTHO05D007308 1.4e-12 77.0 35 100.0
arahy.Tifrunner.gnm1.ann1.JCT5CV Arachis hypogaea HOM05D005853 ORTHO05D007308 1.4e-12 77.0 35 100.0
Dinv41601 Davidia involucrata HOM05D005853 ORTHO05D007308 1.4e-12 77.0 110 49.1
Lsat_1_v5_gn_8_95440 Lactuca sativa HOM05D005853 ORTHO05D007308 1.4e-12 77.0 107 49.5
Medtr4g012810 Medicago truncatula HOM05D005853 ORTHO05D007308 1.8e-12 76.6 111 46.8
CsaV3_1G030480 Cucumis sativus L. HOM05D005853 ORTHO05D007308 2.4e-12 76.3 42 78.6
Gohir.A08G241100 Gossypium hirsutum HOM05D005853 ORTHO05D007308 2.4e-12 76.3 45 75.6
PSO210G6545 Papaver somniferum HOM05D005853 ORTHO05D007308 2.4e-12 76.3 43 83.7
HanXRQChr09g0239771 Helianthus annuus HOM05D005853 ORTHO05D007308 3.1e-12 75.9 99 48.5
Lsat_1_v5_gn_7_40661 Lactuca sativa HOM05D005853 ORTHO05D007308 3.1e-12 75.9 105 46.7
Psat7g250480 Pisum sativum HOM05D005853 ORTHO05D007308 3.1e-12 75.9 93 48.4
Sc12g0009330 Simmondsia chinensis HOM05D005853 ORTHO05D007308 3.1e-12 75.9 41 90.2
GSVIVG01015393001 Vitis vinifera HOM05D005853 ORTHO05D007308 3.1e-12 75.9 36 91.7
CSS0003127 Camellia sinensis var. sinensis HOM05D005853 ORTHO05D007308 4.1e-12 75.5 109 46.8
CSS0011641 Camellia sinensis var. sinensis HOM05D005853 ORTHO05D007308 4.1e-12 75.5 109 46.8
CiPaw.03G232300 Carya illinoinensis HOM05D005853 ORTHO05D007308 4.1e-12 75.5 36 88.9
COL.COLO4_34918 Corchorus olitorius HOM05D005853 ORTHO05D007308 4.1e-12 75.5 46 71.7
MD09G1211800 Malus domestica HOM05D005853 ORTHO05D007308 5.3e-12 75.1 109 49.5
Cpa.g.sc23.111 Carica papaya HOM05D005853 ORTHO05D007308 9.1e-12 74.3 95 49.5
Duzib150G0727 Durio zibethinus HOM05D005853 ORTHO05D007308 9.1e-12 74.3 39 84.6
FvH4_6g31380 Fragaria vesca HOM05D005853 ORTHO05D007308 9.1e-12 74.3 35 94.3
RcHm_v2.0_Chr2g0138141 Rosa chinensis HOM05D005853 ORTHO05D007308 9.1e-12 74.3 35 94.3
Pp3c1_36270 Physcomitrium patens HOM05D005853 ORTHO05D007308 1.6e-11 73.6 36 88.9
Pp3c2_3480 Physcomitrium patens HOM05D005853 ORTHO05D007308 1.6e-11 73.6 36 88.9
Os02g0614200 Oryza sativa ssp. japonica HOM05D005853 ORTHO05D007308 2.0e-11 73.2 46 73.9
Zm00001eb184630 Zea mays HOM05D005853 ORTHO05D007308 2.6e-11 72.8 48 70.8
Sed0009205 Sechium edule HOM05D005853 ORTHO05D007308 3.5e-11 72.4 35 88.6
SMO347G0073 Selaginella moellendorffii HOM05D005853 ORTHO05D007308 3.5e-11 72.4 35 88.6
TPR.G17682 Trifolium pratense HOM05D005853 ORTHO05D007308 3.5e-11 72.4 42 76.2
Aqoxy7G03791 Aquilegia oxysepala HOM05D005853 ORTHO05D007308 5.9e-11 71.6 112 44.6
Atru.chr7.1347 Acer truncatum HOM05D005853 ORTHO05D007308 7.7e-11 71.2 106 42.5
PGR102G0312 Punica granatum HOM05D005853 ORTHO05D007308 7.7e-11 71.2 121 45.5
MELO3C025336.2 Cucumis melo HOM05D005853 ORTHO05D007308 1.0e-10 70.9 128 43.8
Mapoly0029s0025 Marchantia polymorpha HOM05D005853 ORTHO05D007308 2.2e-10 69.7 95 50.5
CBR_g48216 Chara braunii HOM05D005853 ORTHO05D007308 5.0e-10 68.6 91 48.4
SalBow2G1576 Salvia bowleyana HOM05D005853 ORTHO05D007308 5.0e-10 68.6 108 50.0
SEGI_01601 Sequoiadendron giganteum HOM05D005853 ORTHO05D007308 5.0e-10 68.6 55 61.8
Oeu024066.2 Olea europaea HOM05D005853 ORTHO05D007308 8.8e-07 57.8 171 34.5


User provided reference genes

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