Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc04_g02550 Coffea canephora HOM05D002451 ORTHO05D005601 0.0e+00 2260.3 1156 100.0
Dinv37977 Davidia involucrata HOM05D002451 ORTHO05D005601 0.0e+00 1338.6 1159 59.4
Lj9C513G3 Lonicera japonica HOM05D002451 ORTHO05D005601 0.0e+00 1234.6 1150 56.8
GSVIVG01016980001 Vitis vinifera HOM05D002451 ORTHO05D005601 0.0e+00 1223.8 1160 54.9
Sopen03g039860 Solanum pennellii HOM05D002451 ORTHO05D005601 0.0e+00 1211.8 1152 54.9
Solyc03g121030.2 Solanum lycopersicum HOM05D002451 ORTHO05D005601 0.0e+00 1209.1 1152 54.5
MSTRG.11027 Avicennia marina HOM05D002451 ORTHO05D005601 0.0e+00 1201.8 1155 55.9
Rhsim08G0227600 Rhododendron simsii HOM05D002451 ORTHO05D005601 0.0e+00 1197.6 1215 52.4
TAR636G2911 Trochodendron aralioides HOM05D002451 ORTHO05D005601 0.0e+00 1192.9 1151 54.5
Actinidia32098 Actinidia chinensis HOM05D002451 ORTHO05D005601 0.0e+00 1191.8 1161 54.1
CiPaw.01G231400 Carya illinoinensis HOM05D002451 ORTHO05D005601 0.0e+00 1191.8 1160 53.8
QL05p020031 Quercus lobata HOM05D002451 ORTHO05D005601 0.0e+00 1180.6 1231 51.8
Migut.I00897 Erythranthe guttata HOM05D002451 ORTHO05D005601 0.0e+00 1163.7 1163 54.3
Cfa003647 Carpinus fangiana HOM05D002451 ORTHO05D005601 0.0e+00 1150.2 1149 52.7
Nn8g39071 Nelumbo nucifera HOM05D002451 ORTHO05D005601 0.0e+00 1147.9 1162 51.5
Ciclev10024743m.g Citrus clementina HOM05D002451 ORTHO05D005601 0.0e+00 1146.7 1162 53.0
Prupe.3G059000 Prunus persica HOM05D002451 ORTHO05D005601 0.0e+00 1138.3 1163 52.5
MD09G1202800 Malus domestica HOM05D002451 ORTHO05D005601 0.0e+00 1134.0 1152 51.7
Duzib192G0210 Durio zibethinus HOM05D002451 ORTHO05D005601 0.0e+00 1125.5 1158 53.0
Atru.chr1.3524 Acer truncatum HOM05D002451 ORTHO05D005601 0.0e+00 1125.2 1152 53.0
Potri.003G048800 Populus trichocarpa HOM05D002451 ORTHO05D005601 0.0e+00 1121.3 1154 52.3
Haze_15848 Corylus avellana HOM05D002451 ORTHO05D005601 0.0e+00 1117.4 1167 51.4
Manes.11G033500 Manihot esculenta HOM05D002451 ORTHO05D005601 0.0e+00 1117.4 1160 52.6
Thecc.06G100100 Theobroma cacao HOM05D002451 ORTHO05D005601 0.0e+00 1117.4 1161 51.5
TWI12G0408 Tripterygium wilfordii HOM05D002451 ORTHO05D005601 0.0e+00 1113.6 1152 49.8
CANSAT56G2471 Cannabis sativa HOM05D002451 ORTHO05D005601 0.0e+00 1108.6 1158 51.6
Gorai.010G230600 Gossypium raimondii HOM05D002451 ORTHO05D005601 0.0e+00 1100.1 1167 50.6
RcHm_v2.0_Chr2g0140541 Rosa chinensis HOM05D002451 ORTHO05D005601 0.0e+00 1094.3 1156 50.9
Gohir.D06G197800 Gossypium hirsutum HOM05D002451 ORTHO05D005601 0.0e+00 1093.2 1167 50.4
Phvul.005G166100 Phaseolus vulgaris HOM05D002451 ORTHO05D005601 0.0e+00 1090.1 1162 50.7
PSO063G3373 Papaver somniferum HOM05D002451 ORTHO05D005601 0.0e+00 1081.6 1159 49.1
PSO832G2466 Papaver somniferum HOM05D002451 ORTHO05D005601 0.0e+00 1075.1 1159 49.4
FAN05G4332 Fragaria x ananassa HOM05D002451 ORTHO05D005601 1.6e-311 1072.8 1151 50.0
Sed0021872 Sechium edule HOM05D002451 ORTHO05D005601 7.1e-311 1070.8 1163 50.1
Aqoxy7G01406 Aquilegia oxysepala HOM05D002451 ORTHO05D005601 1.5e-308 1063.1 1159 49.8
CsaV3_7G035270 Cucumis sativus L. HOM05D002451 ORTHO05D005601 1.6e-307 1059.7 1165 49.0
TPR.G6596 Trifolium pratense HOM05D002451 ORTHO05D005601 2.4e-306 1055.8 1169 49.5
Medtr2g100870 Medicago truncatula HOM05D002451 ORTHO05D005601 4.0e-306 1055.0 1163 49.8
COL.COLO4_30513 Corchorus olitorius HOM05D002451 ORTHO05D005601 5.2e-306 1054.7 1145 50.3
Glyma.13G354600 Glycine max HOM05D002451 ORTHO05D005601 2.6e-305 1052.4 1158 50.1
Lj1g0009957 Lotus japonicus HOM05D002451 ORTHO05D005601 7.1e-303 1044.3 1162 49.1
CAN.G1143.14 Capsicum annuum HOM05D002451 ORTHO05D005601 1.2e-302 1043.5 1038 52.5
Ca_01165_v3 Cicer arietinum L. HOM05D002451 ORTHO05D005601 2.7e-302 1042.3 1169 49.2
PGR102G3176 Punica granatum HOM05D002451 ORTHO05D005601 1.3e-301 1040.0 1154 48.1
AUR62031915 Chenopodium quinoa HOM05D002451 ORTHO05D005601 9.6e-300 1033.9 1158 47.3
Glyma.15G019600 Glycine max HOM05D002451 ORTHO05D005601 9.6e-300 1033.9 1157 49.1
vmacro18852 Vaccinium macrocarpon HOM05D002451 ORTHO05D005601 1.6e-299 1033.1 1007 52.7
Nitab4.5_0006902g0020 Nicotiana tabacum HOM05D002451 ORTHO05D005601 2.1e-299 1032.7 1145 50.4
Lalb_Chr14g0373021 Lupinus albus HOM05D002451 ORTHO05D005601 2.8e-299 1032.3 1155 48.9
Sc10g0007590 Simmondsia chinensis HOM05D002451 ORTHO05D005601 3.6e-299 1031.9 1165 47.9
FAN02G1073 Fragaria x ananassa HOM05D002451 ORTHO05D005601 1.7e-296 1023.1 1142 48.4
Oeu017119.1 Olea europaea HOM05D002451 ORTHO05D005601 1.7e-296 1023.1 1072 52.3
MELO3C024437.2 Cucumis melo HOM05D002451 ORTHO05D005601 6.4e-296 1021.1 1122 49.2
MBI04_g20307_MAGBIO Magnolia biondii HOM05D002451 ORTHO05D005601 1.6e-294 1016.5 1235 46.6
Lsat_1_v5_gn_4_97440 Lactuca sativa HOM05D002451 ORTHO05D005601 3.9e-293 1011.9 1152 48.4
AUR62022206 Chenopodium quinoa HOM05D002451 ORTHO05D005601 2.8e-291 1005.7 1139 47.8
ECA232G2699 Erigeron canadensis HOM05D002451 ORTHO05D005601 2.9e-288 995.7 1159 47.9
arahy.Tifrunner.gnm1.ann1.65X03I Arachis hypogaea HOM05D002451 ORTHO05D005601 1.4e-287 993.4 1148 47.2
Gohir.A06G189400 Gossypium hirsutum HOM05D002451 ORTHO05D005601 3.2e-287 992.3 1103 48.5
HanXRQChr09g0276251 Helianthus annuus HOM05D002451 ORTHO05D005601 5.1e-285 984.9 1148 48.3
Eucgr.F03079 Eucalyptus grandis HOM05D002451 ORTHO05D005601 1.5e-284 983.4 1107 48.7
Medtr5g085950 Medicago truncatula HOM05D002451 ORTHO05D005601 7.4e-284 981.1 1165 47.2
arahy.Tifrunner.gnm1.ann1.T566S8 Arachis hypogaea HOM05D002451 ORTHO05D005601 9.6e-284 980.7 1153 47.2
FvH4_6g32400 Fragaria vesca HOM05D002451 ORTHO05D005601 3.7e-283 978.8 1066 48.9
TWI75G1452 Tripterygium wilfordii HOM05D002451 ORTHO05D005601 1.9e-279 966.5 1152 45.5
THA.LOC104809828 Tarenaya hassleriana HOM05D002451 ORTHO05D005601 1.3e-275 953.7 1164 46.2
Nitab4.5_0006467g0020 Nicotiana tabacum HOM05D002451 ORTHO05D005601 5.5e-271 938.3 1140 46.9
Hund07601 Selenicereus undatus HOM05D002451 ORTHO05D005601 3.9e-269 932.2 1153 44.7
SGA_v2.0_scaffold66G22528 Striga asiatica HOM05D002451 ORTHO05D005601 7.4e-268 927.9 1162 45.1
ATR0705G185 Amborella trichopoda HOM05D002451 ORTHO05D005601 8.2e-267 924.5 1176 44.2
Sp2g18530 Schrenkiella parvula HOM05D002451 ORTHO05D005601 4.8e-259 898.7 1158 42.7
AL8G20730 Arabidopsis lyrata HOM05D002451 ORTHO05D005601 6.9e-258 894.8 1158 42.5
Psat5g295800 Pisum sativum HOM05D002451 ORTHO05D005601 2.5e-255 886.3 1113 45.7
DCAR_023080 Daucus carota HOM05D002451 ORTHO05D005601 4.2e-255 885.6 1150 44.8
Carub.0008s0769 Capsella rubella HOM05D002451 ORTHO05D005601 9.4e-255 884.4 1160 42.6
FAN09G4229 Fragaria x ananassa HOM05D002451 ORTHO05D005601 2.1e-254 883.2 1051 46.7
Thhalv10003552m.g Eutrema salsugineum HOM05D002451 ORTHO05D005601 6.1e-254 881.7 1140 43.8
AT5G48120 Arabidopsis thaliana HOM05D002451 ORTHO05D005601 1.8e-253 880.2 1157 42.7
A02p37220 Brassica napus HOM05D002451 ORTHO05D005601 1.7e-251 873.6 1159 42.7
Peaxi162Scf00038g01032 Petunia axillaris HOM05D002451 ORTHO05D005601 2.8e-251 872.8 1068 45.1
Aa31LG11G5160 Aethionema arabicum HOM05D002451 ORTHO05D005601 8.2e-251 871.3 1148 43.6
BraA02t08709Z Brassica rapa HOM05D002451 ORTHO05D005601 8.2e-251 871.3 1157 42.2
BcaC03g17628 Brassica carinata HOM05D002451 ORTHO05D005601 1.1e-250 870.9 1161 42.7
C02p56250 Brassica napus HOM05D002451 ORTHO05D005601 1.4e-250 870.5 1160 42.7
BolC2t11683H Brassica oleracea HOM05D002451 ORTHO05D005601 2.6e-249 866.3 1162 42.7
BcaB07g30001 Brassica carinata HOM05D002451 ORTHO05D005601 7.7e-249 864.8 1153 42.2
Ah.01g022090 Amaranthus hybridus HOM05D002451 ORTHO05D005601 2.5e-247 859.8 1147 42.1
Sabra03G0029300 Salix brachista HOM05D002451 ORTHO05D005601 2.6e-241 839.7 1102 44.5
EL10Ac9g21204 Beta vulgaris HOM05D002451 ORTHO05D005601 1.7e-240 837.0 1073 43.4
CARHR259290 Cardamine hirsuta HOM05D002451 ORTHO05D005601 7.2e-239 831.6 1153 41.5
FAN14G4820 Fragaria x ananassa HOM05D002451 ORTHO05D005601 2.6e-236 823.2 957 46.4
Zm00001eb301230 Zea mays HOM05D002451 ORTHO05D005601 9.8e-236 821.2 1151 40.6
HPP92_007690 Vanilla planifolia HOM05D002451 ORTHO05D005601 2.3e-224 783.5 1160 39.1
ClCG09G000210 Citrullus lanatus HOM05D002451 ORTHO05D005601 4.0e-213 746.1 945 44.1
SEGI_26537 Sequoiadendron giganteum HOM05D002451 ORTHO05D005601 4.5e-172 609.8 1052 35.7
Mapoly0036s0119 Marchantia polymorpha HOM05D002451 ORTHO05D005601 3.7e-150 537.0 1198 31.0
Pp3c9_4950 Physcomitrium patens HOM05D002451 ORTHO05D005601 8.2e-150 535.8 1206 31.7
unitig_88.g27601 Utricularia gibba HOM05D002451 ORTHO05D005601 8.8e-144 515.8 715 42.8
Os07g0177100 Oryza sativa ssp. japonica HOM05D002451 ORTHO05D005601 1.2e-137 495.4 647 43.7
CSS0036196 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 1.0e-131 475.7 453 55.6
SMO111G0185 Selaginella moellendorffii HOM05D002451 ORTHO05D005601 4.4e-111 407.1 1138 28.8
TAR624G0206 Trochodendron aralioides HOM05D002451 ORTHO05D005601 3.8e-107 394.0 438 49.1
Aa31sc1931G10 Aethionema arabicum HOM05D002451 ORTHO05D005601 2.9e-102 377.9 526 40.7
CSS0044368 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 3.7e-102 377.5 335 57.0
Cpa.g.sc25.8 Carica papaya HOM05D002451 ORTHO05D005601 3.7e-94 350.9 517 39.1
CDE05G1834 Ceratophyllum demersum HOM05D002451 ORTHO05D005601 3.6e-89 334.3 451 44.1
Aa31LG11G5130 Aethionema arabicum HOM05D002451 ORTHO05D005601 7.5e-87 326.6 452 42.7
ClCG09G000220 Citrullus lanatus HOM05D002451 ORTHO05D005601 1.8e-80 305.4 232 65.1
CBR_g26190 Chara braunii HOM05D002451 ORTHO05D005601 1.2e-76 292.7 1292 24.8
CDE05G2530 Ceratophyllum demersum HOM05D002451 ORTHO05D005601 7.1e-69 266.9 232 56.9
TAR624G0246 Trochodendron aralioides HOM05D002451 ORTHO05D005601 6.4e-62 243.8 206 61.2
Cpa.g.sc25.4 Carica papaya HOM05D002451 ORTHO05D005601 1.5e-58 232.6 154 68.8
QL05p020001 Quercus lobata HOM05D002451 ORTHO05D005601 1.9e-58 232.3 309 45.3
Cpa.g.sc25.5 Carica papaya HOM05D002451 ORTHO05D005601 4.2e-53 214.5 266 43.6
Sc17g0002930 Simmondsia chinensis HOM05D002451 ORTHO05D005601 8.7e-51 206.8 180 58.3
TAR624G0921 Trochodendron aralioides HOM05D002451 ORTHO05D005601 5.6e-50 204.1 226 46.9
Aa31LG9G10330 Aethionema arabicum HOM05D002451 ORTHO05D005601 6.9e-48 197.2 331 38.1
Sabra03G0029200 Salix brachista HOM05D002451 ORTHO05D005601 7.4e-42 177.2 184 52.7
HPP92_007773 Vanilla planifolia HOM05D002451 ORTHO05D005601 4.5e-39 167.9 159 52.8
TAR624G0431 Trochodendron aralioides HOM05D002451 ORTHO05D005601 3.3e-34 151.8 119 60.5
unitig_88.g27602 Utricularia gibba HOM05D002451 ORTHO05D005601 3.1e-32 145.2 144 55.6
A06p15140 Brassica napus HOM05D002451 ORTHO05D020166 3.6e-28 131.7 147 49.7
BraA06t24629Z Brassica rapa HOM05D002451 ORTHO05D020166 3.6e-28 131.7 147 49.7
CSS0026050 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 1.4e-27 129.8 96 71.9
CSS0028178 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 1.4e-27 129.8 96 71.9
EL10Ac9g21205 Beta vulgaris HOM05D002451 ORTHO05D005601 6.7e-27 127.5 180 42.2
SEGI_23779 Sequoiadendron giganteum HOM05D002451 ORTHO05D005601 1.3e-25 123.2 119 51.3
Psat3g036640 Pisum sativum HOM05D002451 ORTHO05D005601 2.4e-24 119.0 188 37.2
HPP92_007804 Vanilla planifolia HOM05D002451 ORTHO05D005601 5.3e-24 117.9 162 42.0
CSS0023144 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 1.2e-23 116.7 122 50.0
Cpa.g.sc25.3 Carica papaya HOM05D002451 ORTHO05D005601 2.0e-23 115.9 102 58.8
Zm00001eb320400 Zea mays HOM05D002451 ORTHO05D005601 2.6e-23 115.5 276 30.8
Psat4g171400 Pisum sativum HOM05D002451 ORTHO05D005601 4.5e-23 114.8 138 45.7
Aa31LG9G10320 Aethionema arabicum HOM05D002451 ORTHO05D005601 1.0e-22 113.6 123 48.8
MCO12G207 Micromonas commoda HOM05D002451 ORTHO05D005601 1.0e-22 113.6 351 26.2
SHI11089 Sapria himalayana HOM05D002451 ORTHO05D005601 3.6e-20 105.1 80 62.5
Lj1g0017121 Lotus japonicus HOM05D002451 ORTHO05D005601 1.1e-18 100.1 93 55.9
Peaxi162Scf00038g01031 Petunia axillaris HOM05D002451 ORTHO05D005601 3.1e-16 92.0 55 83.6
Cre13.g605050 Chlamydomonas reinhardtii HOM05D002451 ORTHO05D005601 7.7e-15 87.4 138 35.5
SHI11090 Sapria himalayana HOM05D002451 ORTHO05D005601 1.3e-14 86.7 63 55.6
Zm00001eb029900 Zea mays HOM05D002451 ORTHO05D005601 1.1e-13 83.6 90 46.7
SGA_v2.0_scaffold123G33404 Striga asiatica HOM05D002451 ORTHO05D005601 4.2e-13 81.6 72 50.0
Hund28869 Selenicereus undatus HOM05D002451 ORTHO05D005601 2.7e-12 79.0 64 62.5
vmacro17797 Vaccinium macrocarpon HOM05D000003 ORTHO05D000007 4.7e-12 78.2 121 40.5
Hund28828 Selenicereus undatus HOM05D002451 ORTHO05D005601 1.0e-11 77.0 68 58.8
SHI11092 Sapria himalayana HOM05D002451 ORTHO05D005601 5.2e-11 74.7 127 33.1
TPR.G18835 Trifolium pratense HOM05D002451 ORTHO05D005601 6.7e-11 74.3 62 62.9
TPR.G18837 Trifolium pratense HOM05D002451 ORTHO05D005601 2.6e-10 72.4 73 47.9
TPR.G18859 Trifolium pratense HOM05D002451 ORTHO05D005601 7.0e-08 64.3 88 40.9
Medtr5g055460 Medicago truncatula HOM05D002451 ORTHO05D005601 9.1e-08 63.9 48 58.3


User provided reference genes

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