Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc04_g02470 Coffea canephora HOM05D008208 ORTHO05D010143 0.0e+00 1664.0 852 100.0
Dinv30429 Davidia involucrata HOM05D008208 ORTHO05D010143 3.4e-44 184.5 300 43.3
Lj9A514T51 Lonicera japonica HOM05D008208 ORTHO05D010143 8.4e-43 179.9 876 28.1
Actinidia09010 Actinidia chinensis HOM05D008208 ORTHO05D010143 1.4e-42 179.1 883 28.4
CSS0036998 Camellia sinensis var. sinensis HOM05D008208 ORTHO05D010143 4.2e-42 177.6 893 27.4
CSS0033280 Camellia sinensis var. sinensis HOM05D008208 ORTHO05D010143 1.3e-40 172.6 894 26.8
QL05p019674 Quercus lobata HOM05D008208 ORTHO05D010143 3.3e-39 167.9 878 28.9
Actinidia39131 Actinidia chinensis HOM05D008208 ORTHO05D010143 1.4e-37 162.5 893 28.1
Oeu002526.1 Olea europaea HOM05D008208 ORTHO05D010143 8.4e-35 153.3 878 28.2
TAR639G0001 Trochodendron aralioides HOM05D008208 ORTHO05D010143 8.4e-35 153.3 924 25.5
GSVIVG01016967001 Vitis vinifera HOM05D000585 ORTHO05D001841 8.4e-35 153.3 899 28.5
Oeu024259.1 Olea europaea HOM05D008208 ORTHO05D010143 6.0e-33 147.1 354 39.0
Sopen03g039910 Solanum pennellii HOM05D008208 ORTHO05D010143 3.0e-32 144.8 865 28.1
PGSC0003DMG400002607 Solanum tuberosum HOM05D008208 ORTHO05D010143 1.9e-31 142.1 824 26.9
Manes.11G032600 Manihot esculenta HOM05D008208 ORTHO05D010143 4.3e-31 141.0 887 25.9
Duzib192G1063 Durio zibethinus HOM05D008208 ORTHO05D010143 5.6e-31 140.6 367 35.7
Solyc03g121080.3 Solanum lycopersicum HOM05D008208 ORTHO05D010143 9.6e-31 139.8 852 29.2
Sabra01G0150900 Salix brachista HOM05D008208 ORTHO05D010143 4.8e-30 137.5 346 37.6
TAR626G1368 Trochodendron aralioides HOM05D008208 ORTHO05D010143 1.8e-29 135.6 924 25.5
Peaxi162Scf00038g01129 Petunia axillaris HOM05D008208 ORTHO05D010143 4.0e-29 134.4 889 27.0
vmacro17009 Vaccinium macrocarpon HOM05D008208 ORTHO05D010143 2.0e-28 132.1 357 33.1
Nitab4.5_0004969g0030 Nicotiana tabacum HOM05D008208 ORTHO05D010143 2.6e-28 131.7 899 26.9
TAR624G0194 Trochodendron aralioides HOM05D008208 ORTHO05D010143 3.4e-28 131.3 856 25.7
Lj5A52T19 Lonicera japonica HOM05D008208 ORTHO05D010143 5.8e-28 130.6 438 30.6
Gorai.011G070600 Gossypium raimondii HOM05D008208 ORTHO05D010143 1.7e-27 129.0 293 35.2
Gohir.D10G066500 Gossypium hirsutum HOM05D008208 ORTHO05D010143 1.4e-26 125.9 290 36.6
Nitab4.5_0006022g0030 Nicotiana tabacum HOM05D008208 ORTHO05D010143 5.5e-26 124.0 878 27.1
MSTRG.11020 Avicennia marina HOM05D008208 ORTHO05D010143 4.6e-25 120.9 432 31.9
Ciclev10025127m.g Citrus clementina HOM05D008208 ORTHO05D010143 6.7e-24 117.1 268 37.3
Potri.001G190601 Populus trichocarpa HOM05D008208 ORTHO05D010143 1.9e-23 115.5 307 34.9
Gohir.A10G065000 Gossypium hirsutum HOM05D008208 ORTHO05D010143 3.1e-21 108.2 482 29.7
PSO210G2837 Papaver somniferum HOM05D029104 ORTHO05D010143 1.2e-20 106.3 262 36.6
CiPaw.02G145300 Carya illinoinensis HOM05D008208 ORTHO05D010143 2.6e-20 105.1 883 25.1
ClCG07G013360 Citrullus lanatus HOM05D026900 ORTHO05D010143 2.9e-19 101.7 757 25.8
MD09G1201800 Malus domestica HOM05D008208 ORTHO05D010143 2.9e-19 101.7 957 25.5
COL.COLO4_30526 Corchorus olitorius HOM05D008208 ORTHO05D010143 4.2e-18 97.8 233 36.9
DCAR_016182 Daucus carota HOM05D002915 ORTHO05D003004 7.2e-18 97.1 229 37.6
PSO210G1301 Papaver somniferum HOM05D029104 ORTHO05D010143 7.2e-18 97.1 372 29.6
MBI01_g10116_MAGBIO Magnolia biondii HOM05D008208 ORTHO05D010143 2.7e-17 95.1 301 32.2
Nn6g35343 Nelumbo nucifera HOM05D008208 ORTHO05D010143 2.7e-17 95.1 936 23.0
Sed0025504 Sechium edule HOM05D026900 ORTHO05D010143 2.7e-17 95.1 796 24.5
MD17G1181700 Malus domestica HOM05D008208 ORTHO05D010143 7.9e-17 93.6 896 25.8
Dinv30428 Davidia involucrata HOM05D008208 ORTHO05D010143 1.0e-16 93.2 419 30.8
Sc10g0007610 Simmondsia chinensis HOM05D008208 ORTHO05D010143 1.4e-16 92.8 264 34.5
Nn8g39048 Nelumbo nucifera HOM05D008208 ORTHO05D010143 1.8e-16 92.4 274 31.0
Thecc.06G101100 Theobroma cacao HOM05D008208 ORTHO05D010143 3.0e-16 91.7 294 31.6
CANSAT56G0900 Cannabis sativa HOM05D008208 ORTHO05D010143 5.1e-16 90.9 304 33.6
RcHm_v2.0_Chr2g0140801 Rosa chinensis HOM05D008208 ORTHO05D010143 6.7e-16 90.5 193 38.3
Hund07613 Selenicereus undatus HOM05D008208 ORTHO05D010143 1.3e-14 86.3 269 34.2
CsaV3_3G023500 Cucumis sativus L. HOM05D026900 ORTHO05D010143 2.2e-14 85.5 768 25.5
HanXRQChr09g0275691 Helianthus annuus HOM05D008208 ORTHO05D010143 6.3e-14 84.0 348 28.7
Migut.I00959 Erythranthe guttata HOM05D008208 ORTHO05D010143 1.1e-13 83.2 350 31.1
MBI04_g07011_MAGBIO Magnolia biondii HOM05D008208 ORTHO05D010143 1.4e-13 82.8 267 33.7
TWI18G0382 Tripterygium wilfordii HOM05D008208 ORTHO05D010143 1.4e-13 82.8 888 23.5
Aqoxy1G02129 Aquilegia oxysepala HOM05D057169 ORTHO05D010143 6.9e-13 80.5 304 32.6
MELO3C013005.2 Cucumis melo HOM05D026900 ORTHO05D010143 6.9e-13 80.5 764 24.6
Aqoxy1G02121 Aquilegia oxysepala HOM05D057169 ORTHO05D010143 9.1e-13 80.1 232 36.2
Lsat_1_v5_gn_5_134320 Lactuca sativa HOM05D008208 ORTHO05D010143 9.1e-13 80.1 434 25.6
EL10Ac9g21199 Beta vulgaris HOM05D008208 ORTHO05D010143 2.0e-12 79.0 244 35.2
Prupe.3G057400 Prunus persica HOM05D008208 ORTHO05D010143 1.3e-11 76.3 926 25.1
RcHm_v2.0_Chr2g0140811 Rosa chinensis HOM05D008208 ORTHO05D010143 2.9e-11 75.1 239 30.5
MBI16_g18399_MAGBIO Magnolia biondii HOM05D004628 ORTHO05D005166 5.0e-11 74.3 198 31.8
Prupe.8G151700 Prunus persica HOM05D004628 ORTHO05D005166 5.0e-11 74.3 227 30.8
Sabra09G0065100 Salix brachista HOM05D004628 ORTHO05D005166 5.0e-11 74.3 262 30.2
Sopen01g049070 Solanum pennellii HOM05D004628 ORTHO05D005166 6.5e-11 73.9 241 32.8
DCAR_023083 Daucus carota HOM05D008208 ORTHO05D010143 1.1e-10 73.2 386 28.8
PGSC0003DMG400001291 Solanum tuberosum HOM05D004628 ORTHO05D005166 1.4e-10 72.8 231 33.3
C05p14910 Brassica napus HOM05D004628 ORTHO05D005166 1.9e-10 72.4 237 30.4
HPP92_001855 Vanilla planifolia HOM05D004628 ORTHO05D005166 2.5e-10 72.0 124 38.7
BolC5t30206H Brassica oleracea HOM05D004628 ORTHO05D005166 5.5e-10 70.9 238 31.1
Solyc01g106750.2 Solanum lycopersicum HOM05D004628 ORTHO05D005166 5.5e-10 70.9 228 33.3
Dinv09529 Davidia involucrata HOM05D004628 ORTHO05D005166 1.2e-09 69.7 223 32.7
Gohir.A13G048100 Gossypium hirsutum HOM05D004628 ORTHO05D005166 1.6e-09 69.3 255 28.2
Aa31LG8G13660 Aethionema arabicum HOM05D004628 ORTHO05D005166 2.1e-09 68.9 210 29.5
Prupe.8G151500 Prunus persica HOM05D004628 ORTHO05D005166 2.1e-09 68.9 189 33.9
SalBow6G1764 Salvia bowleyana HOM05D004628 ORTHO05D005166 2.7e-09 68.6 190 33.7
SalBow6G5308 Salvia bowleyana HOM05D004628 ORTHO05D005166 2.7e-09 68.6 190 33.7
Thhalv10006806m.g Eutrema salsugineum HOM05D004628 ORTHO05D005166 3.6e-09 68.2 206 31.6
Sabra16G0180900 Salix brachista HOM05D004628 ORTHO05D005166 3.6e-09 68.2 236 32.2
A06p12620 Brassica napus HOM05D004628 ORTHO05D005166 4.7e-09 67.8 252 30.6
BraA06t24423Z Brassica rapa HOM05D004628 ORTHO05D005166 6.1e-09 67.4 254 31.1
Sp1g14770 Schrenkiella parvula HOM05D004628 ORTHO05D005166 6.1e-09 67.4 178 36.0
Carub.0001s1637 Capsella rubella HOM05D004628 ORTHO05D005166 7.9e-09 67.0 211 32.2
Migut.B00478 Erythranthe guttata HOM05D004628 ORTHO05D005166 7.9e-09 67.0 229 29.3
Oeu037295.1 Olea europaea HOM05D004628 ORTHO05D005166 1.0e-08 66.6 211 30.3
Peaxi162Scf00016g03244 Petunia axillaris HOM05D004628 ORTHO05D005166 1.0e-08 66.6 209 31.6
AL1G28790 Arabidopsis lyrata HOM05D004628 ORTHO05D005166 1.4e-08 66.2 174 35.6
CARHR106490 Cardamine hirsuta HOM05D004628 ORTHO05D005166 1.4e-08 66.2 234 28.6
Dinv16065 Davidia involucrata HOM05D004628 ORTHO05D005166 1.4e-08 66.2 201 31.8
FAN15G3289 Fragaria x ananassa HOM05D004628 ORTHO05D005166 1.4e-08 66.2 228 31.6
MD09G1201700 Malus domestica HOM05D008208 ORTHO05D010143 1.4e-08 66.2 948 23.3
SalBow2G3317 Salvia bowleyana HOM05D008208 ORTHO05D010143 1.4e-08 66.2 896 23.3
Eucgr.F03082 Eucalyptus grandis HOM05D008208 ORTHO05D010143 1.8e-08 65.9 233 30.5
AT2G16270 Arabidopsis thaliana HOM05D004628 ORTHO05D005166 2.3e-08 65.5 250 28.4
HanXRQChr04g0101671 Helianthus annuus HOM05D004628 ORTHO05D005166 2.3e-08 65.5 180 35.0
AT1G16630 Arabidopsis thaliana HOM05D004628 ORTHO05D005166 3.0e-08 65.1 227 31.7
QL11p028919 Quercus lobata HOM05D004628 ORTHO05D005166 3.0e-08 65.1 271 29.2
QL93p0138_0014 Quercus lobata HOM05D004628 ORTHO05D005166 3.0e-08 65.1 271 29.2
BcaC05g25526 Brassica carinata HOM05D004628 ORTHO05D005166 5.1e-08 64.3 238 30.7
CDE02G2770 Ceratophyllum demersum HOM05D046919 ORTHO05D043903 6.7e-08 63.9 164 36.0
FAN20G2820 Fragaria x ananassa HOM05D004628 ORTHO05D005166 6.7e-08 63.9 230 31.3
Actinidia28002 Actinidia chinensis HOM05D004628 ORTHO05D006160 1.5e-07 62.8 224 29.5
AL3G52350 Arabidopsis lyrata HOM05D004628 ORTHO05D005166 1.5e-07 62.8 244 27.9
FAN27G1701 Fragaria x ananassa HOM05D004628 ORTHO05D005166 2.0e-07 62.4 229 29.7
Nitab4.5_0000772g0030 Nicotiana tabacum HOM05D004628 ORTHO05D005166 2.6e-07 62.0 216 28.7
Gorai.013G052200 Gossypium raimondii HOM05D004628 ORTHO05D005166 3.3e-07 61.6 284 28.5
Atru.chr5.2254 Acer truncatum HOM05D004628 ORTHO05D005166 4.4e-07 61.2 286 27.3
Ah.01g007160 Amaranthus hybridus HOM05D004628 ORTHO05D005166 4.4e-07 61.2 172 34.3
ECA234G3304 Erigeron canadensis HOM05D004628 ORTHO05D005166 4.4e-07 61.2 181 31.5
FAN24G0611 Fragaria x ananassa HOM05D004628 ORTHO05D005166 4.4e-07 61.2 229 29.3
Gohir.D13G046500 Gossypium hirsutum HOM05D004628 ORTHO05D005166 4.4e-07 61.2 281 27.0
Nitab4.5_0010657g0040 Nicotiana tabacum HOM05D004628 ORTHO05D005166 4.4e-07 61.2 216 29.2
Os03g0672400 Oryza sativa ssp. japonica HOM05D058439 ORTHO05D005166 4.4e-07 61.2 185 32.4
Carub.0003s2996 Capsella rubella HOM05D004628 ORTHO05D005166 7.4e-07 60.5 231 28.1
RcHm_v2.0_Chr6g0247921 Rosa chinensis HOM05D004628 ORTHO05D005166 7.4e-07 60.5 257 28.4
SGA_v2.0_scaffold265G46060 Striga asiatica HOM05D008208 ORTHO05D010143 7.4e-07 60.5 888 22.4
Zm00001eb217550 Zea mays HOM05D058439 ORTHO05D005166 7.4e-07 60.5 207 31.4
Cfa004712 Carpinus fangiana HOM05D004628 ORTHO05D005166 9.7e-07 60.1 265 28.3
FvH4_2g03070 Fragaria vesca HOM05D004628 ORTHO05D005166 9.7e-07 60.1 229 29.3
SGA_v2.0_scaffold519G52683 Striga asiatica HOM05D004628 ORTHO05D005166 1.7e-06 59.3 236 30.5
Lj5A222T77 Lonicera japonica HOM05D004628 ORTHO05D005166 2.2e-06 58.9 260 27.7
PSO210G4238 Papaver somniferum HOM05D029104 ORTHO05D010143 2.2e-06 58.9 291 28.9
unitig_744.g24202 Utricularia gibba HOM05D004628 ORTHO05D005166 2.2e-06 58.9 223 30.5
BraA07t28247Z Brassica rapa HOM05D004628 ORTHO05D005166 2.8e-06 58.5 229 28.8
PGR102G1678 Punica granatum HOM05D008208 ORTHO05D010143 2.8e-06 58.5 67 47.8
DCAR_021936 Daucus carota HOM05D004628 ORTHO05D005166 3.7e-06 58.2 72 45.8
Thhalv10022556m.g Eutrema salsugineum HOM05D004628 ORTHO05D005166 3.7e-06 58.2 256 28.9
ECA232G2142 Erigeron canadensis HOM05D008208 ORTHO05D010143 6.3e-06 57.4 404 25.5
Lsat_1_v5_gn_5_111860 Lactuca sativa HOM05D004628 ORTHO05D005166 6.3e-06 57.4 142 33.8
Phvul.003G078900 Phaseolus vulgaris HOM05D004628 ORTHO05D005166 6.3e-06 57.4 203 30.5
Manes.10G088200 Manihot esculenta HOM05D004628 ORTHO05D005166 8.2e-06 57.0 273 29.3
Hund00415 Selenicereus undatus HOM05D004628 ORTHO05D005166 8.2e-06 57.0 243 28.8


User provided reference genes

Program Settings