Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc04_g02430 Coffea canephora HOM05D001329 ORTHO05D004946 0.0e+00 1180.2 612 100.0
Nitab4.5_0004969g0080 Nicotiana tabacum HOM05D001329 ORTHO05D004946 6.5e-223 777.7 615 68.8
GSVIVG01016954001 Vitis vinifera HOM05D001329 ORTHO05D004946 7.5e-219 764.2 608 67.4
Nitab4.5_0005085g0040 Nicotiana tabacum HOM05D001329 ORTHO05D004946 9.2e-217 757.3 610 67.9
Solyc03g121120.4 Solanum lycopersicum HOM05D001329 ORTHO05D004946 2.9e-215 752.3 610 67.0
Sopen03g039950 Solanum pennellii HOM05D001329 ORTHO05D004946 4.3e-214 748.4 605 67.3
PGSC0003DMG400002521 Solanum tuberosum HOM05D001329 ORTHO05D004946 5.6e-214 748.0 605 67.6
Peaxi162Scf00038g01146 Petunia axillaris HOM05D001329 ORTHO05D004946 2.3e-212 742.7 605 67.6
Eucgr.J02692 Eucalyptus grandis HOM05D001329 ORTHO05D004946 3.0e-212 742.3 627 63.0
Eucgr.J02926 Eucalyptus grandis HOM05D001329 ORTHO05D004946 1.5e-211 740.0 627 63.3
CAN.G1143.24 Capsicum annuum HOM05D001329 ORTHO05D004946 3.7e-210 735.3 606 66.7
Duzib235G0146 Durio zibethinus HOM05D001329 ORTHO05D004946 1.7e-207 726.5 657 61.0
TAR626G1508 Trochodendron aralioides HOM05D001329 ORTHO05D004946 3.3e-206 722.2 484 74.8
TAR626G1659 Trochodendron aralioides HOM05D001329 ORTHO05D004946 3.3e-206 722.2 484 74.8
Thecc.06G102200 Theobroma cacao HOM05D001329 ORTHO05D004946 1.6e-205 719.9 568 66.9
HanXRQChr05g0139791 Helianthus annuus HOM05D001329 ORTHO05D004946 3.6e-205 718.8 573 67.5
Ciclev10025165m.g Citrus clementina HOM05D001329 ORTHO05D004946 4.7e-205 718.4 612 64.2
Migut.I00963 Erythranthe guttata HOM05D001329 ORTHO05D004946 1.0e-204 717.2 634 62.3
Manes.11G031600 Manihot esculenta HOM05D001329 ORTHO05D004946 8.9e-204 714.1 495 72.7
Potri.001G191200 Populus trichocarpa HOM05D001329 ORTHO05D004946 8.9e-204 714.1 603 64.0
QL05p019057 Quercus lobata HOM05D001329 ORTHO05D004946 3.4e-203 712.2 606 63.9
PGR102G1644 Punica granatum HOM05D001329 ORTHO05D004946 2.2e-202 709.5 636 61.2
Nn8g39015 Nelumbo nucifera HOM05D001329 ORTHO05D004946 3.2e-201 705.7 508 70.9
Lsat_1_v5_gn_4_98041 Lactuca sativa HOM05D001329 ORTHO05D004946 2.7e-200 702.6 619 62.4
TWI18G0587 Tripterygium wilfordii HOM05D001329 ORTHO05D004946 3.5e-200 702.2 493 71.6
Gorai.011G070300 Gossypium raimondii HOM05D001329 ORTHO05D004946 1.0e-199 700.7 650 59.7
THA.LOC104803142 Tarenaya hassleriana HOM05D001329 ORTHO05D004946 2.8e-197 692.6 630 61.1
Psat4g196800 Pisum sativum HOM05D001329 ORTHO05D004946 3.6e-197 692.2 594 62.0
Sc12g0010100 Simmondsia chinensis HOM05D001329 ORTHO05D004946 1.4e-196 690.3 633 60.7
MD17G1180500 Malus domestica HOM05D001329 ORTHO05D004946 3.1e-196 689.1 498 71.1
Lalb_Chr04g0263001 Lupinus albus HOM05D001329 ORTHO05D004946 5.2e-196 688.3 560 65.7
CANSAT56G2668 Cannabis sativa HOM05D001329 ORTHO05D004946 1.5e-195 686.8 635 60.8
Rhsim08G0228700 Rhododendron simsii HOM05D001329 ORTHO05D004946 1.5e-195 686.8 745 55.6
Medtr8g014670 Medicago truncatula HOM05D001329 ORTHO05D004946 5.8e-195 684.9 549 64.5
Aqoxy7G03959 Aquilegia oxysepala HOM05D001329 ORTHO05D004946 1.3e-194 683.7 484 72.7
vmacro18841 Vaccinium macrocarpon HOM05D001329 ORTHO05D004946 3.7e-194 682.2 716 56.6
Aa31LG3G5830 Aethionema arabicum HOM05D001329 ORTHO05D004946 1.4e-193 680.2 510 69.0
ClCG07G013460 Citrullus lanatus HOM05D001329 ORTHO05D004946 4.1e-193 678.7 503 69.4
ClCG07G013420 Citrullus lanatus HOM05D001329 ORTHO05D004946 5.4e-193 678.3 503 69.4
AL8G24420 Arabidopsis lyrata HOM05D001329 ORTHO05D004946 3.0e-191 672.5 571 62.5
COL.COLO4_30535 Corchorus olitorius HOM05D001329 ORTHO05D004946 6.6e-191 671.4 490 70.2
TPR.G15143 Trifolium pratense HOM05D001329 ORTHO05D004946 8.6e-191 671.0 495 69.7
ECA232G1252 Erigeron canadensis HOM05D001329 ORTHO05D004946 2.5e-190 669.5 459 73.4
Glyma.08G199700 Glycine max HOM05D001329 ORTHO05D004946 3.3e-190 669.1 530 66.6
MBI02_g35318_MAGBIO Magnolia biondii HOM05D001329 ORTHO05D004946 5.6e-190 668.3 489 70.1
unitig_88.g27600 Utricularia gibba HOM05D001329 ORTHO05D004946 7.3e-190 667.9 503 68.0
Sed0006591 Sechium edule HOM05D001329 ORTHO05D004946 1.2e-189 667.2 646 58.0
Gohir.A10G064700 Gossypium hirsutum HOM05D001329 ORTHO05D004946 3.6e-189 665.6 652 57.2
Phvul.010G143800 Phaseolus vulgaris HOM05D001329 ORTHO05D004946 3.6e-189 665.6 502 67.7
Carub.0008s1040 Capsella rubella HOM05D001329 ORTHO05D004946 4.7e-189 665.2 613 59.4
arahy.Tifrunner.gnm1.ann1.KL0FMA Arachis hypogaea HOM05D001329 ORTHO05D002618 6.2e-189 664.8 567 65.1
VMungo0331G1514 Vigna mungo HOM05D001329 ORTHO05D004946 6.2e-189 664.8 486 68.9
FvH4_6g32620 Fragaria vesca HOM05D001329 ORTHO05D004946 1.1e-188 664.1 617 60.8
RcHm_v2.0_Chr2g0141101 Rosa chinensis HOM05D001329 ORTHO05D004946 4.0e-188 662.1 625 59.5
AT5G50340 Arabidopsis thaliana HOM05D001329 ORTHO05D004946 1.5e-187 660.2 609 58.6
Sp6g12440 Schrenkiella parvula HOM05D001329 ORTHO05D004946 1.5e-187 660.2 609 60.1
BcaC01g04813 Brassica carinata HOM05D001329 ORTHO05D004946 2.0e-187 659.8 608 59.4
Ca_23279_v3 Cicer arietinum L. HOM05D001329 ORTHO05D004946 4.4e-187 658.7 534 65.0
BraA03t11990Z Brassica rapa HOM05D001329 ORTHO05D004946 7.6e-187 657.9 609 59.3
Ah.01g017270 Amaranthus hybridus HOM05D001329 ORTHO05D004946 1.3e-186 657.1 631 58.2
Dinv30424 Davidia involucrata HOM05D001329 ORTHO05D004946 1.3e-186 657.1 584 63.7
A03p27790 Brassica napus HOM05D001329 ORTHO05D004946 1.7e-186 656.8 610 59.0
BolC3t15673H Brassica oleracea HOM05D001329 ORTHO05D004946 2.2e-186 656.4 611 59.4
Prupe.3G056500 Prunus persica HOM05D001329 ORTHO05D004946 3.8e-186 655.6 594 61.6
C03p33520 Brassica napus HOM05D001329 ORTHO05D004946 4.9e-186 655.2 611 59.4
CiPaw.01G230000 Carya illinoinensis HOM05D001329 ORTHO05D004946 1.4e-185 653.7 596 60.6
Thhalv10013055m.g Eutrema salsugineum HOM05D001329 ORTHO05D004946 4.1e-185 652.1 611 58.6
PSO478G0947 Papaver somniferum HOM05D001329 ORTHO05D004946 5.4e-185 651.7 488 69.3
ATR0705G162 Amborella trichopoda HOM05D001329 ORTHO05D004946 1.2e-184 650.6 484 68.2
EL10Ac9g21183 Beta vulgaris HOM05D001329 ORTHO05D004946 3.5e-184 649.0 627 58.1
arahy.Tifrunner.gnm1.ann1.B6KHKZ Arachis hypogaea HOM05D001329 ORTHO05D002618 8.6e-183 644.4 478 70.9
Sabra01G0150400 Salix brachista HOM05D001329 ORTHO05D004946 4.3e-182 642.1 547 62.0
PSO782G0993 Papaver somniferum HOM05D001329 ORTHO05D004946 8.1e-181 637.9 598 58.2
AUR62031953 Chenopodium quinoa HOM05D001329 ORTHO05D004946 1.2e-179 634.0 673 54.7
Lalb_Chr24g0396201 Lupinus albus HOM05D001329 ORTHO05D004946 9.9e-179 630.9 609 57.3
Os06g0151600 Oryza sativa ssp. japonica HOM05D001329 ORTHO05D004946 2.2e-178 629.8 489 64.8
BcaB01g02899 Brassica carinata HOM05D001329 ORTHO05D004946 2.7e-176 622.9 484 66.1
arahy.Tifrunner.gnm1.ann1.V5Z0HR Arachis hypogaea HOM05D001329 ORTHO05D004946 1.3e-175 620.5 505 62.4
Glyma.15G021000 Glycine max HOM05D001329 ORTHO05D004946 1.5e-174 617.1 571 59.2
Hund07630 Selenicereus undatus HOM05D001329 ORTHO05D004946 1.9e-174 616.7 631 55.9
CsaV3_3G023430 Cucumis sativus L. HOM05D001329 ORTHO05D004946 9.6e-174 614.4 636 55.3
MELO3C013011.2 Cucumis melo HOM05D001329 ORTHO05D004946 3.6e-173 612.5 635 55.4
GSVIVG01016953001 Vitis vinifera HOM05D001329 ORTHO05D004946 6.2e-173 611.7 545 62.8
SalBow2G1072 Salvia bowleyana HOM05D001329 ORTHO05D004946 1.1e-172 610.9 645 56.1
Lj3g0004043 Lotus japonicus HOM05D001329 ORTHO05D004946 1.8e-172 610.1 491 64.4
VMungo1080G1498 Vigna mungo HOM05D001329 ORTHO05D004946 6.9e-172 608.2 488 64.1
TPR.G6578 Trifolium pratense HOM05D001329 ORTHO05D004946 1.5e-171 607.1 494 63.6
Phvul.005G165000 Phaseolus vulgaris HOM05D001329 ORTHO05D004946 3.8e-170 602.4 535 60.2
Medtr2g100640 Medicago truncatula HOM05D001329 ORTHO05D004946 2.4e-169 599.7 494 63.0
SGA_v2.0_scaffold45G16999 Striga asiatica HOM05D001329 ORTHO05D004946 1.5e-166 590.5 631 55.0
DCAR_007591 Daucus carota HOM05D001329 ORTHO05D004946 5.6e-166 588.6 543 61.3
FAN05G0851 Fragaria x ananassa HOM05D001329 ORTHO05D004946 7.4e-166 588.2 616 56.2
Lj3g0020598 Lotus japonicus HOM05D001329 ORTHO05D004946 2.0e-163 580.1 399 75.4
SGA_v2.0_scaffold265G46056 Striga asiatica HOM05D001329 ORTHO05D004946 1.9e-161 573.5 616 54.7
Gohir.D10G066200 Gossypium hirsutum HOM05D001329 ORTHO05D004946 3.4e-155 552.7 393 72.8
Ca_01173_v3 Cicer arietinum L. HOM05D001329 ORTHO05D004946 1.2e-147 527.7 614 51.5
AUR62022239 Chenopodium quinoa HOM05D001329 ORTHO05D004946 9.3e-145 518.1 638 49.4
Mapoly0008s0091 Marchantia polymorpha HOM05D001329 ORTHO05D004946 4.6e-144 515.8 506 54.7
FAN14G3013 Fragaria x ananassa HOM05D001329 ORTHO05D004946 1.8e-143 513.8 496 58.7
Lj9C514G19 Lonicera japonica HOM05D001329 ORTHO05D004946 6.7e-143 511.9 419 67.3
SEGI_18109 Sequoiadendron giganteum HOM05D001329 ORTHO05D004946 4.5e-139 499.2 383 65.3
Pp3c1_36770 Physcomitrium patens HOM05D001329 ORTHO05D004946 2.5e-137 493.4 514 52.7
Psat5g295200 Pisum sativum HOM05D001329 ORTHO05D004946 3.6e-136 489.6 448 59.8
Zm00001eb270700 Zea mays HOM05D001329 ORTHO05D004946 1.0e-130 471.5 365 64.9
Actinidia32112 Actinidia chinensis HOM05D001329 ORTHO05D004946 1.1e-129 468.0 293 80.9
SMO146G0024 Selaginella moellendorffii HOM05D001329 ORTHO05D004946 4.5e-123 446.0 485 49.7
Atru.chr1.3485 Acer truncatum HOM05D001329 ORTHO05D004946 5.0e-122 442.6 309 73.1
VMungo1080G0220 Vigna mungo HOM05D001329 ORTHO05D004946 1.5e-118 431.0 380 60.0
CBR_g52747 Chara braunii HOM05D001329 ORTHO05D004946 1.5e-110 404.4 544 44.5
AUR62022260 Chenopodium quinoa HOM05D001329 ORTHO05D004946 9.1e-108 395.2 509 49.3
arahy.Tifrunner.gnm1.ann1.VU8J7C Arachis hypogaea HOM05D001329 ORTHO05D004946 5.9e-107 392.5 476 48.3
AagrBONN_evm.TU.Sc2ySwM_340.358 Anthoceros agrestis HOM05D001329 ORTHO05D004946 6.3e-101 372.5 359 55.2
CSS0049032 Camellia sinensis var. sinensis HOM05D001329 ORTHO05D004946 2.9e-98 363.6 283 71.0
MCO02G474 Micromonas commoda HOM05D001329 ORTHO05D004946 8.6e-98 362.1 491 43.4
CSS0007570 Camellia sinensis var. sinensis HOM05D001329 ORTHO05D004946 8.0e-96 355.5 382 55.0
CDE02G2442 Ceratophyllum demersum HOM05D001329 ORTHO05D004946 8.9e-95 352.1 266 65.4
Ah.16g103270 Amaranthus hybridus HOM05D001329 ORTHO05D004946 4.6e-91 339.7 266 66.5
Psat5g239480 Pisum sativum HOM05D001329 ORTHO05D004946 5.0e-90 336.3 325 58.2
PRCOL_00001245 Prasinoderma coloniale HOM05D001329 ORTHO05D004946 1.1e-87 328.6 522 39.3
CSS0047870 Camellia sinensis var. sinensis HOM05D001329 ORTHO05D004946 3.7e-85 320.1 366 52.2
HPP92_003950 Vanilla planifolia HOM05D001329 ORTHO05D004946 3.0e-82 310.5 261 64.0
Haze_15874 Corylus avellana HOM05D001329 ORTHO05D004946 2.8e-80 303.9 344 52.6
Haze_15870 Corylus avellana HOM05D001329 ORTHO05D004946 1.1e-79 302.0 344 52.6
Cpa.g.sc25.37 Carica papaya HOM05D001329 ORTHO05D004946 5.2e-79 299.7 196 78.1
CARHR258160 Cardamine hirsuta HOM05D001329 ORTHO05D004946 4.4e-78 296.6 362 49.4
CANSAT56G4024 Cannabis sativa HOM05D001329 ORTHO05D004946 5.8e-70 269.6 195 71.3
AL58U10020 Arabidopsis lyrata HOM05D001329 ORTHO05D004946 1.7e-69 268.1 191 69.6
SHI11143 Sapria himalayana HOM05D000023 ORTHO05D000014 1.9e-68 264.6 401 42.6
Actinidia21724 Actinidia chinensis HOM05D001329 ORTHO05D004946 2.3e-66 257.7 346 46.8
CDE02G0018 Ceratophyllum demersum HOM05D001329 ORTHO05D004946 1.1e-65 255.4 178 71.9
Cre07.g317908 Chlamydomonas reinhardtii HOM05D001329 ORTHO05D004946 9.9e-62 242.3 665 29.5
RcHm_v2.0_Chr2g0141091 Rosa chinensis HOM05D001329 ORTHO05D004946 3.2e-60 237.3 250 56.4
CANSAT56G3773 Cannabis sativa HOM05D001329 ORTHO05D004946 9.6e-57 225.7 155 76.1
SMO173G0075 Selaginella moellendorffii HOM05D001329 ORTHO05D004946 4.0e-55 220.3 266 45.9
SMO173G0086 Selaginella moellendorffii HOM05D001329 ORTHO05D004946 1.4e-52 211.8 243 47.3
SMO173G0029 Selaginella moellendorffii HOM05D001329 ORTHO05D004946 5.4e-52 209.9 245 46.5
Haze_15873 Corylus avellana HOM05D001329 ORTHO05D004946 9.6e-49 199.1 156 71.2
Lsat_1_v5_gn_1_63401 Lactuca sativa HOM05D001329 ORTHO05D004946 6.9e-47 193.0 147 70.1
Lsat_1_v5_gn_9_94461 Lactuca sativa HOM05D001329 ORTHO05D004946 1.4e-44 185.3 133 72.9
Oeu063750.1 Olea europaea HOM05D001329 ORTHO05D004946 1.9e-41 174.9 117 75.2
Hma1.2p1_0430F.1_g151230 Hydrangea macrophylla HOM05D001329 ORTHO05D004946 2.9e-37 161.0 239 39.7
SMO173G0090 Selaginella moellendorffii HOM05D001329 ORTHO05D004946 4.9e-37 160.2 240 40.4
Haze_15869 Corylus avellana HOM05D001329 ORTHO05D004946 4.6e-35 153.7 149 59.7
SMO146G0193 Selaginella moellendorffii HOM05D001329 ORTHO05D004946 4.6e-35 153.7 245 40.4
SEGI_08653 Sequoiadendron giganteum HOM05D001329 ORTHO05D004946 1.0e-29 136.0 257 37.0
Psat5g295400 Pisum sativum HOM05D001329 ORTHO05D004946 1.4e-28 132.1 133 51.1
PSO675G5297 Papaver somniferum HOM05D001329 ORTHO05D004946 5.5e-28 130.2 253 36.0
Cpa.g.sc25.35 Carica papaya HOM05D001329 ORTHO05D004946 8.8e-26 122.9 92 56.5
Glyma.13G353300 Glycine max HOM05D001329 ORTHO05D004946 3.3e-25 120.9 109 58.7
Gohir.A05G129875 Gossypium hirsutum HOM05D001329 ORTHO05D004946 4.4e-17 94.0 73 58.9
Cpa.g.sc2949.1 Carica papaya HOM05D001329 ORTHO05D004946 2.2e-16 91.7 51 88.2
Eucgr.G00548 Eucalyptus grandis HOM05D001329 ORTHO05D004946 3.1e-15 87.8 59 76.3
PGR102G0501 Punica granatum HOM05D001329 ORTHO05D004946 3.1e-15 87.8 141 41.1
arahy.Tifrunner.gnm1.ann1.3W2ZUL Arachis hypogaea HOM05D001329 ORTHO05D010271 1.2e-14 85.9 73 58.9
SHI11148 Sapria himalayana HOM05D000105 ORTHO05D000023 3.8e-13 80.9 131 38.2
Cfa015409 Carpinus fangiana HOM05D007753 ORTHO05D009385 5.5e-12 77.0 59 61.0
Glyma.08G248800 Glycine max HOM05D001329 ORTHO05D004946 5.5e-12 77.0 48 85.4
SMO173G0016 Selaginella moellendorffii HOM05D001329 ORTHO05D004946 9.4e-12 76.3 70 48.6
SalBow8G0867 Salvia bowleyana HOM05D001329 ORTHO05D004946 1.2e-11 75.9 125 39.2
Cpa.g.c44864 Carica papaya HOM05D001329 ORTHO05D004946 3.6e-11 74.3 53 60.4
SMO173G0061 Selaginella moellendorffii HOM05D001549 ORTHO05D003098 4.7e-11 73.9 48 68.8
Oeu043914.1 Olea europaea HOM05D001329 ORTHO05D004946 8.0e-11 73.2 56 58.9
SHI11147 Sapria himalayana HOM05D000105 ORTHO05D000023 1.4e-10 72.4 87 47.1
BcaB01g06145 Brassica carinata HOM05D001329 ORTHO05D004946 3.9e-10 70.9 97 40.2
C04p54240 Brassica napus HOM05D001329 ORTHO05D004946 5.2e-10 70.5 161 33.5
BcaC02g08434 Brassica carinata HOM05D001329 ORTHO05D004946 1.5e-09 68.9 41 65.9
arahy.Tifrunner.gnm1.ann1.R9IHKK Arachis hypogaea HOM05D001329 ORTHO05D010271 5.7e-09 67.0 52 63.5
CsaV3_5G013640 Cucumis sativus L. HOM05D001329 ORTHO05D004946 3.7e-08 64.3 57 52.6
arahy.Tifrunner.gnm1.ann1.H8VH8W Arachis hypogaea HOM05D008137 ORTHO05D010271 4.8e-08 63.9 51 56.9
AUR62022240 Chenopodium quinoa HOM05D001329 ORTHO05D004946 6.3e-08 63.5 219 30.6
RcHm_v2.0_Chr2g0141071 Rosa chinensis HOM05D001329 ORTHO05D004946 5.3e-07 60.5 51 54.9
arahy.Tifrunner.gnm1.ann1.4Z5MNN Arachis hypogaea HOM05D001329 ORTHO05D004946 1.6e-06 58.9 39 74.4


User provided reference genes

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