Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc04_g02230 Coffea canephora HOM05D005721 ORTHO05D006758 0.0e+00 1316.6 665 100.0
Hma1.2p1_0388F.1_g142110 Hydrangea macrophylla HOM05D005721 ORTHO05D006758 1.2e-278 963.0 655 72.4
TAR383G0756 Trochodendron aralioides HOM05D005721 ORTHO05D006758 4.9e-272 941.0 646 72.6
Actinidia21738 Actinidia chinensis HOM05D005721 ORTHO05D006758 7.0e-271 937.2 671 70.0
CSS0018154 Camellia sinensis var. sinensis HOM05D005721 ORTHO05D006758 9.2e-271 936.8 654 71.4
Sopen03g040160 Solanum pennellii HOM05D005721 ORTHO05D006758 3.5e-270 934.9 660 72.4
Solyc03g121350.3 Solanum lycopersicum HOM05D005721 ORTHO05D006758 1.7e-269 932.6 672 71.3
Dinv37937 Davidia involucrata HOM05D005721 ORTHO05D006758 2.5e-268 928.7 669 70.6
Nitab4.5_0004848g0040 Nicotiana tabacum HOM05D005721 ORTHO05D006758 2.8e-267 925.2 663 71.6
GSVIVG01016897001 Vitis vinifera HOM05D005721 ORTHO05D006758 2.3e-266 922.2 646 70.0
Haze_15914 Corylus avellana HOM05D005721 ORTHO05D006758 4.0e-266 921.4 657 70.0
vmacro18826 Vaccinium macrocarpon HOM05D005721 ORTHO05D006758 4.0e-266 921.4 657 70.6
CAN.G1668.6 Capsicum annuum HOM05D005721 ORTHO05D006758 4.4e-265 917.9 659 71.2
Thecc.06G106800 Theobroma cacao HOM05D005721 ORTHO05D006758 6.4e-264 914.1 648 71.1
Duzib235G0012 Durio zibethinus HOM05D005721 ORTHO05D006758 8.3e-264 913.7 652 70.9
Gohir.A10G062400 Gossypium hirsutum HOM05D005721 ORTHO05D006758 1.1e-263 913.3 655 69.8
Gorai.011G068100 Gossypium raimondii HOM05D005721 ORTHO05D006758 2.4e-263 912.1 655 69.8
CANSAT56G2950 Cannabis sativa HOM05D005721 ORTHO05D006758 3.5e-262 908.3 651 69.4
MD09G1196700 Malus domestica HOM05D005721 ORTHO05D006758 1.1e-260 903.3 664 68.8
Lsat_1_v5_gn_4_96061 Lactuca sativa HOM05D005721 ORTHO05D006758 2.5e-260 902.1 646 70.1
Prupe.3G053200 Prunus persica HOM05D005721 ORTHO05D006758 7.3e-260 900.6 663 68.3
Nitab4.5_0006071g0030 Nicotiana tabacum HOM05D005721 ORTHO05D006758 9.5e-260 900.2 672 70.1
MD17G1178100 Malus domestica HOM05D005721 ORTHO05D006758 1.2e-259 899.8 665 68.3
Duzib192G0301 Durio zibethinus HOM05D005721 ORTHO05D006758 2.1e-259 899.0 644 69.7
QL05p015579 Quercus lobata HOM05D005721 ORTHO05D006758 6.2e-259 897.5 658 67.8
QL05p015721 Quercus lobata HOM05D005721 ORTHO05D006758 6.2e-259 897.5 656 68.1
Ciclev10025098m.g Citrus clementina HOM05D005721 ORTHO05D006758 8.0e-259 897.1 656 68.6
RcHm_v2.0_Chr2g0142311 Rosa chinensis HOM05D005721 ORTHO05D006758 5.2e-258 894.4 658 68.2
Dinv30404 Davidia involucrata HOM05D005721 ORTHO05D006758 2.0e-257 892.5 614 73.0
PSO210G3246 Papaver somniferum HOM05D005721 ORTHO05D006758 2.0e-257 892.5 658 69.8
Eucgr.F03100 Eucalyptus grandis HOM05D005721 ORTHO05D006758 7.5e-257 890.6 660 67.9
Migut.I00999 Erythranthe guttata HOM05D005721 ORTHO05D006758 1.7e-256 889.4 665 67.4
ECA232G2751 Erigeron canadensis HOM05D005721 ORTHO05D006758 3.7e-256 888.3 649 69.8
CiPaw.01G227700 Carya illinoinensis HOM05D005721 ORTHO05D006758 6.4e-256 887.5 649 68.1
Atru.chr1.3621 Acer truncatum HOM05D005721 ORTHO05D006758 1.1e-255 886.7 646 68.1
PSO210G5250 Papaver somniferum HOM05D005721 ORTHO05D006758 4.6e-254 881.3 648 70.1
Glyma.08G196700 Glycine max HOM05D005721 ORTHO05D006758 6.0e-254 880.9 649 67.6
PGR102G0208 Punica granatum HOM05D005721 ORTHO05D006758 5.0e-253 877.9 670 67.2
FvH4_6g32880 Fragaria vesca HOM05D005721 ORTHO05D006758 1.5e-252 876.3 649 67.6
SGA_v2.0_scaffold71G23752 Striga asiatica HOM05D005721 ORTHO05D006758 3.3e-252 875.2 658 66.7
Glyma.07G013000 Glycine max HOM05D005721 ORTHO05D006758 4.3e-252 874.8 655 67.3
Aqoxy7G03983 Aquilegia oxysepala HOM05D005721 ORTHO05D006758 1.2e-251 873.2 647 67.9
Lj3g0007444 Lotus japonicus HOM05D005721 ORTHO05D006758 1.2e-251 873.2 657 67.3
CsaV3_7G034930 Cucumis sativus L. HOM05D005721 ORTHO05D006758 4.7e-251 871.3 659 66.8
FAN02G2457 Fragaria x ananassa HOM05D005721 ORTHO05D006758 4.7e-251 871.3 649 67.5
Medtr8g015550 Medicago truncatula HOM05D005721 ORTHO05D006758 1.2e-249 866.7 651 66.4
FAN05G3306 Fragaria x ananassa HOM05D005721 ORTHO05D006758 1.5e-249 866.3 649 67.3
Sed0006169 Sechium edule HOM05D005721 ORTHO05D006758 2.6e-249 865.5 659 65.9
Peaxi162Scf00038g01247 Petunia axillaris HOM05D005721 ORTHO05D006758 5.8e-249 864.4 659 68.4
Manes.11G029200 Manihot esculenta HOM05D005721 ORTHO05D006758 8.3e-248 860.5 643 65.6
Psat4g194600 Pisum sativum HOM05D005721 ORTHO05D006758 1.9e-247 859.4 652 66.3
Nn6g35400 Nelumbo nucifera HOM05D005721 ORTHO05D006758 2.4e-247 859.0 647 67.2
Ca_23291_v3 Cicer arietinum L. HOM05D005721 ORTHO05D006758 3.2e-247 858.6 651 66.4
Lalb_Chr01g0013341 Lupinus albus HOM05D005721 ORTHO05D006758 2.3e-245 852.4 669 64.6
MBI01_g16575_MAGBIO Magnolia biondii HOM05D005721 ORTHO05D006758 2.3e-245 852.4 641 67.9
VMungo0331G1465 Vigna mungo HOM05D005721 ORTHO05D006758 9.5e-244 847.0 649 66.6
Gohir.D10G064100 Gossypium hirsutum HOM05D005721 ORTHO05D006758 1.6e-243 846.3 588 71.4
Phvul.010G142500 Phaseolus vulgaris HOM05D005721 ORTHO05D006758 1.6e-243 846.3 649 66.7
Hund07658 Selenicereus undatus HOM05D005721 ORTHO05D006758 4.7e-243 844.7 645 67.0
A07p39040 Brassica napus HOM05D005721 ORTHO05D006758 6.2e-243 844.3 657 64.1
C06p47250 Brassica napus HOM05D005721 ORTHO05D006758 8.1e-243 844.0 643 64.7
BolC6t39764H Brassica oleracea HOM05D005721 ORTHO05D006758 8.1e-243 844.0 643 64.7
THA.LOC104813944 Tarenaya hassleriana HOM05D005721 ORTHO05D006758 7.6e-241 837.4 653 64.3
Nn8g38942 Nelumbo nucifera HOM05D005721 ORTHO05D006758 1.3e-240 836.6 647 66.5
BraA07t31454Z Brassica rapa HOM05D005721 ORTHO05D006758 2.9e-240 835.5 654 63.6
Thhalv10018233m.g Eutrema salsugineum HOM05D005721 ORTHO05D006758 1.6e-238 829.7 643 63.6
Lj9A516G96 Lonicera japonica HOM05D005721 ORTHO05D006758 2.3e-237 825.9 665 65.6
Carub.0002s1978 Capsella rubella HOM05D005721 ORTHO05D006758 8.7e-237 823.9 644 63.2
AL2G32770 Arabidopsis lyrata HOM05D005721 ORTHO05D006758 1.1e-236 823.5 643 63.1
AT1G73020 Arabidopsis thaliana HOM05D005721 ORTHO05D006758 1.1e-236 823.5 655 62.6
Sp5g27980 Schrenkiella parvula HOM05D005721 ORTHO05D006758 1.1e-236 823.5 643 63.5
CARHR065990 Cardamine hirsuta HOM05D005721 ORTHO05D006758 1.9e-236 822.8 644 62.9
ClCG09G000510 Citrullus lanatus HOM05D005721 ORTHO05D006758 3.1e-234 815.5 659 63.7
Rhsim08G0230700 Rhododendron simsii HOM05D005721 ORTHO05D006758 4.9e-232 808.1 661 63.4
Oeu001923.1 Olea europaea HOM05D005721 ORTHO05D006758 6.0e-230 801.2 654 64.4
Aa31LG4G3310 Aethionema arabicum HOM05D005721 ORTHO05D006758 1.1e-228 797.0 643 62.5
arahy.Tifrunner.gnm1.ann1.NQY1Y2 Arachis hypogaea HOM05D005721 ORTHO05D006758 1.3e-227 793.5 660 60.5
arahy.Tifrunner.gnm1.ann1.HT12QJ Arachis hypogaea HOM05D005721 ORTHO05D006758 2.8e-227 792.3 660 60.3
BolC6t38551H Brassica oleracea HOM05D005721 ORTHO05D006758 8.1e-227 790.8 655 60.9
Os01g0706700 Oryza sativa ssp. japonica HOM05D005721 ORTHO05D006758 5.3e-226 788.1 660 62.1
BraA07t30638Z Brassica rapa HOM05D005721 ORTHO05D006758 9.9e-225 783.9 640 61.2
ATR0789G086 Amborella trichopoda HOM05D005721 ORTHO05D006758 8.4e-224 780.8 660 62.7
BcaC08g45678 Brassica carinata HOM05D005721 ORTHO05D006758 2.4e-223 779.2 655 60.2
EL10Ac9g21136 Beta vulgaris HOM05D005721 ORTHO05D006758 5.4e-223 778.1 679 61.0
TPR.G8754 Trifolium pratense HOM05D005721 ORTHO05D006758 7.1e-223 777.7 611 63.5
C06p34410 Brassica napus HOM05D005721 ORTHO05D006758 2.5e-220 769.2 655 59.5
A07p30000 Brassica napus HOM05D005721 ORTHO05D006758 1.3e-219 766.9 656 59.6
Hma1.2p1_0388F.1_g142120 Hydrangea macrophylla HOM05D005721 ORTHO05D006758 9.3e-215 750.7 525 70.7
Sc12g0009950 Simmondsia chinensis HOM05D005721 ORTHO05D006758 3.9e-205 718.8 558 63.6
unitig_26.g8931 Utricularia gibba HOM05D005721 ORTHO05D006758 5.3e-202 708.4 627 60.1
DCAR_031423 Daucus carota HOM05D005721 ORTHO05D006758 1.9e-199 699.9 649 59.2
AUR62023905 Chenopodium quinoa HOM05D005721 ORTHO05D006758 4.8e-195 685.3 620 59.0
Zm00001eb361150 Zea mays HOM05D005721 ORTHO05D006758 2.0e-193 679.9 557 62.8
AUR62038341 Chenopodium quinoa HOM05D005721 ORTHO05D006758 2.9e-192 676.0 677 55.2
Ah.01g004440 Amaranthus hybridus HOM05D005721 ORTHO05D006758 1.4e-186 657.1 650 57.1
Cpa.g.sc131.22 Carica papaya HOM05D005721 ORTHO05D006758 8.5e-184 647.9 649 55.8
Oeu026535.1 Olea europaea HOM05D005721 ORTHO05D006758 2.4e-170 603.2 446 67.9
AagrBONN_evm.TU.Sc2ySwM_344.674 Anthoceros agrestis HOM05D005721 ORTHO05D006758 2.7e-161 573.2 659 47.5
Actinidia32127 Actinidia chinensis HOM05D005721 ORTHO05D006758 8.9e-157 558.1 660 48.8
Zm00001eb155350 Zea mays HOM05D005721 ORTHO05D006758 1.2e-156 557.8 498 58.6
MELO3C024406.2 Cucumis melo HOM05D005721 ORTHO05D006758 5.4e-154 548.9 592 52.4
Mapoly0004s0214 Marchantia polymorpha HOM05D005721 ORTHO05D006758 1.6e-153 547.4 661 45.5
Pp3c7_22640 Physcomitrium patens HOM05D005721 ORTHO05D006758 1.0e-149 534.6 649 45.5
SMO147G0374 Selaginella moellendorffii HOM05D005721 ORTHO05D006758 2.3e-149 533.5 651 43.9
CBR_g57226 Chara braunii HOM05D005721 ORTHO05D006758 3.8e-123 446.4 656 40.4
arahy.Tifrunner.gnm1.ann1.NL3M0M Arachis hypogaea HOM05D005721 ORTHO05D006758 3.9e-80 303.5 338 50.9
FAN14G1222 Fragaria x ananassa HOM05D005721 ORTHO05D006758 2.0e-79 301.2 228 64.5
Oeu023783.1 Olea europaea HOM05D005721 ORTHO05D006758 3.1e-53 214.2 280 46.1
Zm00001eb344360 Zea mays HOM05D005721 ORTHO05D006758 1.2e-47 195.7 121 76.0
Gorai.010G178600 Gossypium raimondii HOM05D005721 ORTHO05D006758 2.0e-44 184.9 157 61.1
FvH4_6g32370 Fragaria vesca HOM05D005721 ORTHO05D006758 9.5e-42 176.0 148 58.8
arahy.Tifrunner.gnm1.ann1.402B9T Arachis hypogaea HOM05D005721 ORTHO05D006758 2.3e-40 171.4 278 36.3
Zm00001eb192810 Zea mays HOM05D005721 ORTHO05D006758 2.3e-40 171.4 110 79.1
Glyma.16G086100 Glycine max HOM05D005721 ORTHO05D006758 1.1e-37 162.5 107 72.9
Glyma.16G136400 Glycine max HOM05D005721 ORTHO05D006758 9.2e-37 159.5 107 72.0
Gohir.D06G152751 Gossypium hirsutum HOM05D005721 ORTHO05D006758 2.7e-36 157.9 156 54.5
VMungo0251G0043 Vigna mungo HOM05D005721 ORTHO05D006758 1.0e-35 156.0 166 51.2
Zm00001eb419420 Zea mays HOM05D005721 ORTHO05D006758 5.0e-35 153.7 93 80.6
arahy.Tifrunner.gnm1.ann1.P3QXG2 Arachis hypogaea HOM05D005721 ORTHO05D006758 4.3e-34 150.6 126 56.3
SEGI_20658 Sequoiadendron giganteum HOM05D005721 ORTHO05D006758 1.6e-33 148.7 219 37.4
Gohir.A06G146950 Gossypium hirsutum HOM05D005721 ORTHO05D006758 6.8e-32 143.3 156 51.9
QL05p015216 Quercus lobata HOM05D005721 ORTHO05D006758 1.1e-29 136.0 160 45.6
arahy.Tifrunner.gnm1.ann1.F8M988 Arachis hypogaea HOM05D005721 ORTHO05D006758 2.0e-28 131.7 100 66.0
Glyma.12G149950 Glycine max HOM05D005721 ORTHO05D006758 7.8e-28 129.8 85 72.9
HanXRQChr05g0162621 Helianthus annuus HOM05D005721 ORTHO05D006758 6.2e-25 120.2 82 65.9
arahy.Tifrunner.gnm1.ann1.SY3941 Arachis hypogaea HOM05D005721 ORTHO05D006758 4.0e-24 117.5 92 65.2
HanXRQChr04g0123091 Helianthus annuus HOM05D005721 ORTHO05D006758 5.2e-24 117.1 86 62.8
Glyma.09G112900 Glycine max HOM05D005721 ORTHO05D006758 5.4e-21 107.1 101 52.5
COL.COLO4_30597 Corchorus olitorius HOM05D005721 ORTHO05D006758 1.5e-15 89.0 85 54.1
Cfa026500 Carpinus fangiana HOM05D005721 ORTHO05D006758 7.6e-15 86.7 503 23.7
HanXRQChr05g0131511 Helianthus annuus HOM05D005721 ORTHO05D006758 1.3e-14 85.9 101 50.5
arahy.Tifrunner.gnm1.ann1.EXE9LQ Arachis hypogaea HOM05D005721 ORTHO05D006758 3.7e-14 84.3 56 67.9
Glyma.19G071451 Glycine max HOM05D005721 ORTHO05D006758 1.1e-13 82.8 54 72.2
HanXRQChr09g0276291 Helianthus annuus HOM05D005721 ORTHO05D006758 5.4e-13 80.5 48 79.2
MCO06G118 Micromonas commoda HOM05D005721 ORTHO05D006758 8.6e-11 73.2 243 27.2


User provided reference genes

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