Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc04_g01890 Coffea canephora HOM05D007812 ORTHO05D009912 1.5e-16 89.0 67 100.0
SalBow7G0845 Salvia bowleyana HOM05D007812 ORTHO05D009912 2.1e-13 78.6 67 80.6
arahy.Tifrunner.gnm1.ann1.4U9STT Arachis hypogaea HOM05D007812 ORTHO05D009912 1.3e-12 75.9 67 83.6
TPR.G19291 Trifolium pratense HOM05D007812 ORTHO05D009912 8.7e-12 73.2 67 71.6
COL.COLO4_30669 Corchorus olitorius HOM05D007812 ORTHO05D009912 1.1e-11 72.8 67 77.6
Lj3g0001021 Lotus japonicus HOM05D007812 ORTHO05D009912 1.5e-11 72.4 67 76.1
Medtr8g017190 Medicago truncatula HOM05D007812 ORTHO05D009912 1.9e-11 72.0 67 77.6
arahy.Tifrunner.gnm1.ann1.X39S4K Arachis hypogaea HOM05D007812 ORTHO05D009912 2.5e-11 71.6 67 80.6
Psat4g188240 Pisum sativum HOM05D007812 ORTHO05D009912 9.6e-11 69.7 67 73.1
Ca_23324_v3 Cicer arietinum L. HOM05D007812 ORTHO05D009912 2.1e-10 68.6 67 74.6
Haze_15960 Corylus avellana HOM05D007812 ORTHO05D009912 2.1e-10 68.6 64 76.6
Cpa.g.sc25.43 Carica papaya HOM05D007812 ORTHO05D009912 4.8e-10 67.4 65 60.0
Lalb_Chr04g0263241 Lupinus albus HOM05D007812 ORTHO05D009912 4.8e-10 67.4 67 73.1
CiPaw.02G139600 Carya illinoinensis HOM05D007812 ORTHO05D009912 6.2e-10 67.0 64 68.8
Sc15g0000160 Simmondsia chinensis HOM05D007812 ORTHO05D009912 8.2e-10 66.6 66 74.2
Hund18713 Selenicereus undatus HOM05D007812 ORTHO05D009912 1.4e-09 65.9 67 73.1
Atru.chr1.3756 Acer truncatum HOM05D007812 ORTHO05D009912 2.4e-09 65.1 67 59.7
Ah.08g216270 Amaranthus hybridus HOM05D007812 ORTHO05D009912 2.4e-09 65.1 67 71.6
CSS0045617 Camellia sinensis var. sinensis HOM05D007812 ORTHO05D009912 2.4e-09 65.1 40 92.5
DCAR_016154 Daucus carota HOM05D007812 ORTHO05D009912 2.4e-09 65.1 62 67.7
Eucgr.J02853 Eucalyptus grandis HOM05D007812 ORTHO05D009912 2.4e-09 65.1 63 77.8
PSO210G6368 Papaver somniferum HOM05D007812 ORTHO05D009912 2.4e-09 65.1 67 68.7
Manes.11G025800 Manihot esculenta HOM05D007812 ORTHO05D009912 3.1e-09 64.7 67 59.7
Phvul.010G138300 Phaseolus vulgaris HOM05D007812 ORTHO05D009912 3.1e-09 64.7 67 71.6
PGSC0003DMG400024854 Solanum tuberosum HOM05D007812 ORTHO05D009912 3.1e-09 64.7 63 77.8
Nitab4.5_0000174g0150 Nicotiana tabacum HOM05D007812 ORTHO05D009912 4.0e-09 64.3 68 75.0
Nitab4.5_0001087g0010 Nicotiana tabacum HOM05D007812 ORTHO05D009912 4.0e-09 64.3 68 75.0
Cfa003579 Carpinus fangiana HOM05D007812 ORTHO05D009912 5.3e-09 63.9 62 64.5
Thhalv10021887m.g Eutrema salsugineum HOM05D007812 ORTHO05D009912 6.9e-09 63.5 70 58.6
Nn8g38844 Nelumbo nucifera HOM05D007812 ORTHO05D009912 6.9e-09 63.5 64 71.9
BcaB06g25431 Brassica carinata HOM05D007812 ORTHO05D009912 9.0e-09 63.2 70 58.6
A05p35560 Brassica napus HOM05D007812 ORTHO05D009912 9.0e-09 63.2 70 58.6
C05p53950 Brassica napus HOM05D007812 ORTHO05D009912 9.0e-09 63.2 70 58.6
BolC5t34061H Brassica oleracea HOM05D007812 ORTHO05D009912 9.0e-09 63.2 70 58.6
BraA05t22365Z Brassica rapa HOM05D007812 ORTHO05D009912 9.0e-09 63.2 70 58.6
Migut.D00965 Erythranthe guttata HOM05D007812 ORTHO05D009912 1.2e-08 62.8 62 71.0
Sabra03G0024000 Salix brachista HOM05D007812 ORTHO05D009912 1.2e-08 62.8 67 59.7
Hma1.2p1_0496F.1_g165840 Hydrangea macrophylla HOM05D007812 ORTHO05D009912 2.0e-08 62.0 65 55.4
QL05p012120 Quercus lobata HOM05D007812 ORTHO05D009912 2.6e-08 61.6 66 75.8
Sp3g12050 Schrenkiella parvula HOM05D007812 ORTHO05D009912 2.6e-08 61.6 59 61.0
arahy.Tifrunner.gnm1.ann1.B0MA7N Arachis hypogaea HOM05D007812 ORTHO05D009912 3.4e-08 61.2 39 89.7
PGR102G2903 Punica granatum HOM05D007812 ORTHO05D009912 3.4e-08 61.2 66 57.6
TWI31G1317 Tripterygium wilfordii HOM05D007812 ORTHO05D009912 3.4e-08 61.2 67 68.7
Peaxi162Scf00066g01714 Petunia axillaris HOM05D007812 ORTHO05D009912 4.5e-08 60.8 63 76.2
Potri.003G037100 Populus trichocarpa HOM05D007812 ORTHO05D009912 4.5e-08 60.8 65 63.1
Sed0004047 Sechium edule HOM05D007812 ORTHO05D009912 4.5e-08 60.8 40 82.5
THA.LOC104822637 Tarenaya hassleriana HOM05D007812 ORTHO05D009912 4.5e-08 60.8 69 69.6
ECA247G3511 Erigeron canadensis HOM05D007812 ORTHO05D009912 5.8e-08 60.5 39 84.6
Aa31LG10G880 Aethionema arabicum HOM05D007812 ORTHO05D009912 7.6e-08 60.1 39 82.1
Potri.001G196150 Populus trichocarpa HOM05D007812 ORTHO05D009912 7.6e-08 60.1 67 58.2
RcHm_v2.0_Chr2g0143441 Rosa chinensis HOM05D007812 ORTHO05D009912 7.6e-08 60.1 40 82.5
Sopen04g026470 Solanum pennellii HOM05D007812 ORTHO05D009912 1.0e-07 59.7 38 86.8
CAN.G1040.8 Capsicum annuum HOM05D007812 ORTHO05D009912 1.3e-07 59.3 38 86.8
MBI01_g09945_MAGBIO Magnolia biondii HOM05D007812 ORTHO05D009912 1.7e-07 58.9 62 54.8
Carub.0003s1338 Capsella rubella HOM05D007812 ORTHO05D009912 2.2e-07 58.5 66 60.6
CARHR088620 Cardamine hirsuta HOM05D007812 ORTHO05D009912 2.2e-07 58.5 71 54.9
unitig_88.g27591 Utricularia gibba HOM05D007812 ORTHO05D009912 2.2e-07 58.5 67 74.6
FAN09G2870 Fragaria x ananassa HOM05D007812 ORTHO05D009912 2.9e-07 58.2 40 82.5
Glyma.07G009200 Glycine max HOM05D007812 ORTHO05D009912 3.8e-07 57.8 67 68.7
Nitab4.5_0000255g0170 Nicotiana tabacum HOM05D007812 ORTHO05D009912 3.8e-07 57.8 67 56.7
ATR0716G008 Amborella trichopoda HOM05D007812 ORTHO05D009912 4.9e-07 57.4 67 64.2
CDE06G1846 Ceratophyllum demersum HOM05D007812 ORTHO05D009912 4.9e-07 57.4 67 56.7
Ciclev10026913m.g Citrus clementina HOM05D007812 ORTHO05D009912 4.9e-07 57.4 67 68.7
AL3G25990 Arabidopsis lyrata HOM05D007812 ORTHO05D009912 6.5e-07 57.0 66 68.2
AT3G13845 Arabidopsis thaliana HOM05D007812 ORTHO05D009912 6.5e-07 57.0 66 68.2
Zm00001eb270650 Zea mays HOM05D007812 ORTHO05D009912 6.5e-07 57.0 40 80.0
ClCG09G000730 Citrullus lanatus HOM05D007812 ORTHO05D009912 8.4e-07 56.6 36 83.3
CsaV3_7G034750 Cucumis sativus L. HOM05D007812 ORTHO05D009912 1.1e-06 56.2 36 80.6
CAN.G825.36 Capsicum annuum HOM05D007812 ORTHO05D009912 1.4e-06 55.8 65 58.5
Gohir.A05G135100 Gossypium hirsutum HOM05D007812 ORTHO05D009912 3.2e-06 54.7 37 78.4
Gohir.D05G137100 Gossypium hirsutum HOM05D007812 ORTHO05D009912 3.2e-06 54.7 37 78.4
Gorai.009G141500 Gossypium raimondii HOM05D007812 ORTHO05D009912 3.2e-06 54.7 37 78.4
Thecc.06G112400 Theobroma cacao HOM05D007812 ORTHO05D009912 4.2e-06 54.3 36 75.0


User provided reference genes

Program Settings