Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc04_g01780 Coffea canephora HOM05D006233 ORTHO05D007247 1.7e-76 289.3 147 100.0
Dinv04018 Davidia involucrata HOM05D006233 ORTHO05D007247 1.9e-43 179.5 147 67.3
MSTRG.9502 Avicennia marina HOM05D006233 ORTHO05D007247 2.1e-42 176.0 152 65.1
Migut.D00962 Erythranthe guttata HOM05D006233 ORTHO05D007247 5.2e-41 171.4 158 58.9
Nitab4.5_0005918g0010 Nicotiana tabacum HOM05D006233 ORTHO05D007247 1.5e-40 169.9 146 67.8
TWI63G1789 Tripterygium wilfordii HOM05D006233 ORTHO05D007247 2.6e-40 169.1 145 64.8
Nitab4.5_0000255g0250 Nicotiana tabacum HOM05D006233 ORTHO05D007247 5.7e-40 167.9 146 66.4
Dinv37902 Davidia involucrata HOM05D006233 ORTHO05D007247 1.3e-39 166.8 146 65.1
MD17G1173900 Malus domestica HOM05D006233 ORTHO05D007247 1.3e-39 166.8 145 63.4
CANSAT56G1839 Cannabis sativa HOM05D006233 ORTHO05D007247 2.2e-39 166.0 148 63.5
Cfa003566 Carpinus fangiana HOM05D006233 ORTHO05D007247 2.2e-39 166.0 146 63.7
Prupe.3G047000 Prunus persica HOM05D006233 ORTHO05D007247 2.2e-39 166.0 145 63.4
Actinidia26050 Actinidia chinensis HOM05D006233 ORTHO05D007247 2.8e-39 165.6 145 62.8
Actinidia39105 Actinidia chinensis HOM05D006233 ORTHO05D007247 2.8e-39 165.6 146 60.3
RcHm_v2.0_Chr2g0143671 Rosa chinensis HOM05D006233 ORTHO05D007247 2.8e-39 165.6 145 62.8
MD09G1191200 Malus domestica HOM05D006233 ORTHO05D007247 6.3e-39 164.5 145 62.1
CiPaw.02G138900 Carya illinoinensis HOM05D006233 ORTHO05D007247 8.2e-39 164.1 146 63.7
Lj5A43T71 Lonicera japonica HOM05D006233 ORTHO05D007247 1.4e-38 163.3 157 59.2
Thecc.06G113700 Theobroma cacao HOM05D006233 ORTHO05D007247 1.8e-38 162.9 146 64.4
FAN09G3309 Fragaria x ananassa HOM05D006233 ORTHO05D007247 2.4e-38 162.5 147 60.5
FvH4_6g33800 Fragaria vesca HOM05D006233 ORTHO05D007247 1.2e-37 160.2 145 59.3
FAN14G4045 Fragaria x ananassa HOM05D006233 ORTHO05D007247 1.2e-37 160.2 145 59.3
SGA_v2.0_scaffold4G02044 Striga asiatica HOM05D006233 ORTHO05D007247 1.2e-37 160.2 150 62.0
Peaxi162Scf00207g01343 Petunia axillaris HOM05D006233 ORTHO05D007247 2.0e-37 159.5 146 61.0
Sopen06g022210 Solanum pennellii HOM05D006233 ORTHO05D007247 2.0e-37 159.5 148 61.5
Hma1.2p1_1128F.1_g259780 Hydrangea macrophylla HOM05D006233 ORTHO05D007247 2.6e-37 159.1 148 62.2
CiPaw.01G223500 Carya illinoinensis HOM05D006233 ORTHO05D007247 3.5e-37 158.7 146 60.3
HanXRQChr10g0312401 Helianthus annuus HOM05D006233 ORTHO05D007247 3.5e-37 158.7 147 63.3
PGSC0003DMG400004851 Solanum tuberosum HOM05D006233 ORTHO05D007247 4.5e-37 158.3 148 60.1
Gohir.D06G199600 Gossypium hirsutum HOM05D006233 ORTHO05D007247 5.9e-37 157.9 146 61.6
Manes.11G024800 Manihot esculenta HOM05D006233 ORTHO05D007247 5.9e-37 157.9 148 63.5
Gorai.010G232600 Gossypium raimondii HOM05D006233 ORTHO05D007247 7.7e-37 157.5 146 61.6
FAN05G2224 Fragaria x ananassa HOM05D006233 ORTHO05D007247 1.3e-36 156.8 145 58.6
Solyc06g062760.3 Solanum lycopersicum HOM05D006233 ORTHO05D007247 1.7e-36 156.4 149 61.1
Gohir.A06G191200 Gossypium hirsutum HOM05D006233 ORTHO05D007247 2.9e-36 155.6 146 61.6
TWI38G0279 Tripterygium wilfordii HOM05D006233 ORTHO05D007247 2.9e-36 155.6 146 59.6
Eucgr.F03142 Eucalyptus grandis HOM05D006233 ORTHO05D007247 5.0e-36 154.8 145 58.6
Nn6g35511 Nelumbo nucifera HOM05D006233 ORTHO05D007247 5.0e-36 154.8 147 61.2
CsaV3_3G043640 Cucumis sativus L. HOM05D006233 ORTHO05D007247 8.5e-36 154.1 150 56.0
Haze_15979 Corylus avellana HOM05D006233 ORTHO05D007247 1.1e-35 153.7 168 55.4
Manes.04G140700 Manihot esculenta HOM05D006233 ORTHO05D007247 1.5e-35 153.3 146 61.0
MELO3C013069.2 Cucumis melo HOM05D006233 ORTHO05D007247 1.9e-35 152.9 148 56.1
arahy.Tifrunner.gnm1.ann1.LDN3BT Arachis hypogaea HOM05D006233 ORTHO05D007247 5.5e-35 151.4 144 59.7
GSVIVG01016799001 Vitis vinifera HOM05D006233 ORTHO05D007247 5.5e-35 151.4 148 58.1
Aqoxy7G01184 Aquilegia oxysepala HOM05D006233 ORTHO05D007247 7.2e-35 151.0 145 56.6
Cpa.g.sc25.68 Carica papaya HOM05D006233 ORTHO05D007247 9.4e-35 150.6 147 63.3
COL.COLO4_38606 Corchorus olitorius HOM05D006233 ORTHO05D007247 1.8e-33 146.4 146 61.0
Sed0001061 Sechium edule HOM05D006233 ORTHO05D007247 3.0e-33 145.6 148 55.4
Medtr8g017420 Medicago truncatula HOM05D006233 ORTHO05D007247 8.8e-33 144.1 144 59.7
ECA234G2580 Erigeron canadensis HOM05D006233 ORTHO05D007247 1.5e-32 143.3 149 59.1
Hund20828 Selenicereus undatus HOM05D006233 ORTHO05D007247 1.5e-32 143.3 165 51.5
Lj5A42T58 Lonicera japonica HOM05D006233 ORTHO05D007247 2.6e-32 142.5 85 81.2
Ca_23330_v3 Cicer arietinum L. HOM05D006233 ORTHO05D007247 3.3e-32 142.1 146 56.8
Lalb_Chr25g0280771 Lupinus albus HOM05D006233 ORTHO05D007247 5.7e-32 141.4 144 55.6
TPR.G3185 Trifolium pratense HOM05D006233 ORTHO05D007247 7.5e-32 141.0 103 68.9
CDE03G0127 Ceratophyllum demersum HOM05D006233 ORTHO05D007247 2.2e-31 139.4 143 54.5
PGR119G1625 Punica granatum HOM05D006233 ORTHO05D007247 2.2e-31 139.4 149 55.0
BcaB04g18809 Brassica carinata HOM05D006233 ORTHO05D007247 3.7e-31 138.7 149 55.0
ClCG07G013950 Citrullus lanatus HOM05D006233 ORTHO05D007247 3.7e-31 138.7 144 53.5
Atru.chr1.3781 Acer truncatum HOM05D006233 ORTHO05D007247 4.8e-31 138.3 146 58.2
Carub.0003s1344 Capsella rubella HOM05D006233 ORTHO05D007247 1.1e-30 137.1 149 55.7
MBI04_g36913_MAGBIO Magnolia biondii HOM05D006233 ORTHO05D007247 1.4e-30 136.7 145 55.2
AL3G26050 Arabidopsis lyrata HOM05D006233 ORTHO05D007247 4.1e-30 135.2 149 55.7
Ciclev10026736m.g Citrus clementina HOM05D006233 ORTHO05D007247 4.1e-30 135.2 143 55.9
PSO210G1065 Papaver somniferum HOM05D006233 ORTHO05D007247 4.1e-30 135.2 147 51.7
Thhalv10021711m.g Eutrema salsugineum HOM05D006233 ORTHO05D007247 5.3e-30 134.8 148 55.4
AT3G13882 Arabidopsis thaliana HOM05D006233 ORTHO05D007247 7.0e-30 134.4 149 55.0
Lj5g0016703 Lotus japonicus HOM05D006233 ORTHO05D007247 7.0e-30 134.4 151 53.6
Potri.003G041100 Populus trichocarpa HOM05D006233 ORTHO05D007247 9.1e-30 134.0 148 58.1
AUR62038159 Chenopodium quinoa HOM05D006233 ORTHO05D007247 2.0e-29 132.9 157 52.9
Sp3g12110 Schrenkiella parvula HOM05D006233 ORTHO05D007247 2.7e-29 132.5 148 53.4
CARHR088680 Cardamine hirsuta HOM05D006233 ORTHO05D007247 4.5e-29 131.7 149 52.3
Psat4g187760 Pisum sativum HOM05D006233 ORTHO05D007247 4.5e-29 131.7 138 57.2
BcaB06g25428 Brassica carinata HOM05D006233 ORTHO05D007247 5.9e-29 131.3 155 53.5
PSO210G5036 Papaver somniferum HOM05D006233 ORTHO05D007247 1.0e-28 130.6 148 52.0
Aa31LG8G1060 Aethionema arabicum HOM05D006233 ORTHO05D007247 1.7e-28 129.8 149 53.0
BolC3t16928H Brassica oleracea HOM05D006233 ORTHO05D007247 1.7e-28 129.8 149 55.0
BcaC05g29149 Brassica carinata HOM05D006233 ORTHO05D007247 2.9e-28 129.0 153 52.9
C05p53920 Brassica napus HOM05D006233 ORTHO05D007247 2.9e-28 129.0 153 52.9
AUR62009846 Chenopodium quinoa HOM05D006233 ORTHO05D007247 2.9e-28 129.0 155 51.6
Actinidia32155 Actinidia chinensis HOM05D006233 ORTHO05D007247 3.8e-28 128.6 146 52.1
A03p38490 Brassica napus HOM05D006233 ORTHO05D007247 5.0e-28 128.3 149 54.4
C03p46650 Brassica napus HOM05D006233 ORTHO05D007247 5.0e-28 128.3 149 54.4
HanXRQChr04g0094941 Helianthus annuus HOM05D006233 ORTHO05D007247 5.0e-28 128.3 145 55.9
Phvul.010G137600 Phaseolus vulgaris HOM05D006233 ORTHO05D007247 6.5e-28 127.9 143 53.1
BcaC01g03969 Brassica carinata HOM05D006233 ORTHO05D007247 8.5e-28 127.5 149 54.4
VMungo0331G0931 Vigna mungo HOM05D006233 ORTHO05D007247 3.2e-27 125.6 143 55.2
Duzib192G0098 Durio zibethinus HOM05D006233 ORTHO05D007247 7.2e-27 124.4 124 58.1
Glyma.08G191600 Glycine max HOM05D006233 ORTHO05D007247 7.2e-27 124.4 130 58.5
Glyma.07G008600 Glycine max HOM05D006233 ORTHO05D007247 1.2e-26 123.6 75 80.0
BraA03t12999Z Brassica rapa HOM05D006233 ORTHO05D007247 1.6e-26 123.2 153 54.2
BraA03t13001Z Brassica rapa HOM05D006233 ORTHO05D007247 8.0e-26 120.9 150 53.3
THA.LOC104822640 Tarenaya hassleriana HOM05D006233 ORTHO05D007247 8.0e-26 120.9 169 48.5
FAN21G3416 Fragaria x ananassa HOM05D006233 ORTHO05D007247 2.3e-25 119.4 125 52.0
EL10Ac7g16362 Beta vulgaris HOM05D006233 ORTHO05D007247 8.8e-25 117.5 162 46.3
arahy.Tifrunner.gnm1.ann1.9P6A99 Arachis hypogaea HOM05D006233 ORTHO05D007247 1.5e-24 116.7 122 55.7
Rhsim08G0234900 Rhododendron simsii HOM05D006233 ORTHO05D007247 1.5e-24 116.7 129 51.9
Os01g0571200 Oryza sativa ssp. japonica HOM05D006233 ORTHO05D007247 2.6e-24 115.9 149 48.3
SGA_v2.0_scaffold68G22913 Striga asiatica HOM05D006233 ORTHO05D007247 3.4e-24 115.5 126 53.2
Zm00001eb160070 Zea mays HOM05D006233 ORTHO05D007247 1.4e-22 110.2 147 44.9
unitig_8.g4463 Utricularia gibba HOM05D006233 ORTHO05D007247 5.4e-22 108.2 126 48.4
BolC5t34058H Brassica oleracea HOM05D006233 ORTHO05D007247 7.0e-22 107.8 162 45.1
FAN11G2894 Fragaria x ananassa HOM05D000283 ORTHO05D007247 7.0e-22 107.8 113 49.6
Lsat_1_v5_gn_5_135041 Lactuca sativa HOM05D006233 ORTHO05D007247 1.2e-21 107.1 123 51.2
ATR0789G010 Amborella trichopoda HOM05D006233 ORTHO05D007247 9.5e-19 97.4 76 65.8
Nn8g38812 Nelumbo nucifera HOM05D006233 ORTHO05D007247 9.5e-19 97.4 123 49.6
CDE06G1672 Ceratophyllum demersum HOM05D006233 ORTHO05D007247 6.3e-15 84.7 126 44.4
A03p38520 Brassica napus HOM05D006233 ORTHO05D007247 7.0e-14 81.3 125 44.8
QL05p010226 Quercus lobata HOM05D006233 ORTHO05D007247 9.2e-14 80.9 94 54.3
QL05p010144 Quercus lobata HOM05D006233 ORTHO05D007247 1.2e-13 80.5 93 53.8
Zm00001eb357240 Zea mays HOM05D006233 ORTHO05D007247 3.5e-13 79.0 128 40.6
BraA05t22362Z Brassica rapa HOM05D006233 ORTHO05D007247 3.8e-12 75.5 172 37.8
CSS0050466 Camellia sinensis var. sinensis HOM05D006233 ORTHO05D007247 3.8e-12 75.5 92 50.0
HPP92_007656 Vanilla planifolia HOM05D006233 ORTHO05D007247 3.8e-12 75.5 131 35.1
BcaC05g29150 Brassica carinata HOM05D006233 ORTHO05D007247 3.6e-10 68.9 148 41.2
Oeu011882.1 Olea europaea HOM05D006233 ORTHO05D007247 4.7e-10 68.6 96 44.8
Mapoly0016s0011 Marchantia polymorpha HOM05D006233 ORTHO05D007247 6.1e-10 68.2 71 53.5
AagrBONN_evm.TU.Sc2ySwM_368.223 Anthoceros agrestis HOM05D003143 ORTHO05D003628 1.0e-09 67.4 57 57.9
RcHm_v2.0_Chr5g0063721 Rosa chinensis HOM05D006233 ORTHO05D007247 1.4e-09 67.0 91 47.3
Pp3c4_29560 Physcomitrium patens HOM05D006233 ORTHO05D007247 2.3e-09 66.2 50 58.0
SalBow7G1471 Salvia bowleyana HOM05D006233 ORTHO05D007247 2.3e-09 66.2 102 43.1
CBR_g8600 Chara braunii HOM05D006233 ORTHO05D007247 1.5e-08 63.5 50 62.0
vmacro18776 Vaccinium macrocarpon HOM05D006233 ORTHO05D007247 5.8e-08 61.6 91 41.8
MCO16G417 Micromonas commoda HOM05D003208 ORTHO05D004103 7.5e-08 61.2 57 52.6
Nn1g01194 Nelumbo nucifera HOM05D006233 ORTHO05D007247 7.5e-08 61.2 50 62.0
Sed0004594 Sechium edule HOM05D006233 ORTHO05D007247 2.9e-07 59.3 92 41.3
Ca_29232_v3 Cicer arietinum L. HOM05D006233 ORTHO05D007247 1.1e-06 57.4 42 64.3


User provided reference genes

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