Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc04_g01610 Coffea canephora HOM05D004436 ORTHO05D005179 4.1e-176 621.3 317 100.0
Nitab4.5_0000035g0090 Nicotiana tabacum HOM05D004436 ORTHO05D005179 1.9e-125 453.0 315 71.7
Dinv30366 Davidia involucrata HOM05D004436 ORTHO05D005179 4.4e-122 441.8 317 70.0
PGSC0003DMG400016304 Solanum tuberosum HOM05D004436 ORTHO05D005179 1.4e-120 436.8 317 69.4
Nitab4.5_0012713g0010 Nicotiana tabacum HOM05D004436 ORTHO05D005179 4.1e-120 435.3 317 70.0
Dinv03512 Davidia involucrata HOM05D004436 ORTHO05D005179 5.4e-120 434.9 317 69.1
Peaxi162Scf00943g00014 Petunia axillaris HOM05D004436 ORTHO05D005179 5.4e-120 434.9 315 66.7
Solyc06g053330.4 Solanum lycopersicum HOM05D004436 ORTHO05D005179 6.0e-119 431.4 317 68.8
CAN.G540.4 Capsicum annuum HOM05D004436 ORTHO05D005179 1.7e-118 429.9 317 67.8
Sopen06g018390 Solanum pennellii HOM05D004436 ORTHO05D005179 2.3e-118 429.5 317 68.5
Peaxi162Scf00647g00219 Petunia axillaris HOM05D004436 ORTHO05D005179 6.6e-118 427.9 315 65.4
Lj5A40G74 Lonicera japonica HOM05D004436 ORTHO05D005179 1.5e-114 416.8 316 65.2
Actinidia32167 Actinidia chinensis HOM05D004436 ORTHO05D005179 1.3e-113 413.7 321 66.0
MSTRG.22562 Avicennia marina HOM05D004436 ORTHO05D005179 5.1e-110 401.7 318 63.2
Oeu047041.1 Olea europaea HOM05D004436 ORTHO05D005179 4.0e-107 392.1 309 63.1
CiPaw.05G181900 Carya illinoinensis HOM05D004436 ORTHO05D005179 7.6e-106 387.9 316 62.0
GSVIVG01016817001 Vitis vinifera HOM05D004436 ORTHO05D005179 7.6e-106 387.9 318 63.8
TAR375G0086 Trochodendron aralioides HOM05D004436 ORTHO05D005179 1.7e-105 386.7 317 60.3
CiPaw.01G221800 Carya illinoinensis HOM05D004436 ORTHO05D005179 4.9e-105 385.2 316 62.0
Oeu044709.1 Olea europaea HOM05D004436 ORTHO05D005179 1.4e-104 383.6 316 60.8
Eucgr.F03167 Eucalyptus grandis HOM05D004436 ORTHO05D005179 9.2e-104 380.9 316 59.5
CSS0015890 Camellia sinensis var. sinensis HOM05D004436 ORTHO05D005179 8.6e-102 374.4 317 62.1
vmacro22224 Vaccinium macrocarpon HOM05D004436 ORTHO05D005179 1.9e-101 373.2 317 60.3
Peaxi162Scf00060g02815 Petunia axillaris HOM05D004436 ORTHO05D005179 5.6e-101 371.7 303 61.4
Lsat_1_v5_gn_5_135221 Lactuca sativa HOM05D004436 ORTHO05D005179 2.1e-100 369.8 317 57.7
Cpa.g.sc25.86 Carica papaya HOM05D004436 ORTHO05D005179 5.2e-99 365.2 317 60.3
Nitab4.5_0004287g0020 Nicotiana tabacum HOM05D004436 ORTHO05D005179 1.2e-98 364.0 260 70.0
Rhsim08G0236100 Rhododendron simsii HOM05D004436 ORTHO05D005179 2.6e-98 362.8 315 57.8
Hma1.2p1_0496F.1_g166100 Hydrangea macrophylla HOM05D004436 ORTHO05D005179 9.9e-98 360.9 318 59.1
HanXRQChr10g0312341 Helianthus annuus HOM05D004436 ORTHO05D005179 1.7e-97 360.1 319 56.7
SGA_v2.0_scaffold68G22895 Striga asiatica HOM05D004436 ORTHO05D005179 2.9e-97 359.4 316 56.6
Ciclev10025597m.g Citrus clementina HOM05D004436 ORTHO05D005179 3.8e-97 359.0 316 58.2
CSS0033207 Camellia sinensis var. sinensis HOM05D004436 ORTHO05D005179 3.2e-96 355.9 317 60.3
Migut.D00948 Erythranthe guttata HOM05D004436 ORTHO05D005179 6.0e-95 351.7 318 53.8
CsaV3_7G034640 Cucumis sativus L. HOM05D004436 ORTHO05D005179 1.3e-94 350.5 316 57.0
Prupe.3G044800 Prunus persica HOM05D004436 ORTHO05D005179 2.3e-94 349.7 315 56.8
ClCG09G000840 Citrullus lanatus HOM05D004436 ORTHO05D005179 1.1e-93 347.4 316 56.3
Manes.04G142200 Manihot esculenta HOM05D004436 ORTHO05D005179 1.1e-93 347.4 317 57.1
MELO3C024372.2 Cucumis melo HOM05D004436 ORTHO05D005179 1.9e-93 346.7 316 56.3
Haze_15997 Corylus avellana HOM05D004436 ORTHO05D005179 9.6e-93 344.4 349 52.4
Manes.11G023100 Manihot esculenta HOM05D004436 ORTHO05D005179 4.8e-92 342.0 316 56.0
Sed0007780 Sechium edule HOM05D004436 ORTHO05D005179 5.3e-91 338.6 317 55.2
Thecc.03G227200 Theobroma cacao HOM05D004436 ORTHO05D005179 1.2e-90 337.4 319 54.2
Sed0020704 Sechium edule HOM05D004436 ORTHO05D005179 1.5e-90 337.0 315 55.2
Potri.001G198600 Populus trichocarpa HOM05D004436 ORTHO05D005179 2.6e-90 336.3 315 54.6
PGR119G1065 Punica granatum HOM05D004436 ORTHO05D005179 3.4e-90 335.9 316 55.1
RcHm_v2.0_Chr2g0144531 Rosa chinensis HOM05D004436 ORTHO05D005179 3.4e-90 335.9 317 54.6
DCAR_026403 Daucus carota HOM05D004436 ORTHO05D005179 5.8e-90 335.1 316 52.8
Sc12g0010440 Simmondsia chinensis HOM05D004436 ORTHO05D005179 2.2e-89 333.2 317 53.3
Rhsim10G0150900 Rhododendron simsii HOM05D004436 ORTHO05D005179 1.9e-88 330.1 390 48.2
FAN02G3564 Fragaria x ananassa HOM05D004436 ORTHO05D005179 3.5e-87 325.9 315 53.3
COL.COLO4_17027 Corchorus olitorius HOM05D004436 ORTHO05D005179 4.6e-87 325.5 321 54.8
FAN09G2135 Fragaria x ananassa HOM05D004436 ORTHO05D005179 7.9e-87 324.7 315 53.3
ECA234G4408 Erigeron canadensis HOM05D004436 ORTHO05D005179 1.3e-86 323.9 313 53.0
TWI23G0436 Tripterygium wilfordii HOM05D004436 ORTHO05D005179 1.3e-86 323.9 316 55.4
FvH4_6g34180 Fragaria vesca HOM05D004436 ORTHO05D005179 1.8e-86 323.6 315 53.7
Hund20819 Selenicereus undatus HOM05D004436 ORTHO05D005179 1.8e-86 323.6 317 54.6
CANSAT56G1493 Cannabis sativa HOM05D004436 ORTHO05D005179 2.3e-86 323.2 317 53.6
FAN05G5343 Fragaria x ananassa HOM05D004436 ORTHO05D005179 3.9e-86 322.4 315 52.4
Sabra01G0155800 Salix brachista HOM05D004436 ORTHO05D005179 5.1e-86 322.0 328 51.2
Duzib205G0267 Durio zibethinus HOM05D004436 ORTHO05D005179 2.5e-85 319.7 316 53.8
COL.COLO4_30482 Corchorus olitorius HOM05D004436 ORTHO05D005179 4.3e-85 318.9 322 54.7
MD09G1187900 Malus domestica HOM05D004436 ORTHO05D005179 3.6e-84 315.8 318 52.5
THA.LOC104804933 Tarenaya hassleriana HOM05D004436 ORTHO05D005179 4.8e-84 315.5 316 53.8
Glyma.15G165300 Glycine max HOM05D004436 ORTHO05D005179 6.2e-84 315.1 313 54.0
Atru.chr1.3808 Acer truncatum HOM05D004436 ORTHO05D005179 8.1e-84 314.7 284 55.3
Lj6g0016044 Lotus japonicus HOM05D004436 ORTHO05D005179 8.1e-84 314.7 313 51.1
FAN26G0630 Fragaria x ananassa HOM05D004436 ORTHO05D005179 1.1e-83 314.3 315 52.1
FAN14G2695 Fragaria x ananassa HOM05D004436 ORTHO05D005179 4.5e-82 308.9 351 48.4
Aa31LG8G1130 Aethionema arabicum HOM05D004436 ORTHO05D005179 9.9e-82 307.8 318 52.8
Gorai.003G182300 Gossypium raimondii HOM05D004436 ORTHO05D005179 1.4e-80 303.9 319 50.5
Gohir.D03G171700 Gossypium hirsutum HOM05D004436 ORTHO05D005179 1.9e-80 303.5 319 50.2
Gohir.A03G000500 Gossypium hirsutum HOM05D004436 ORTHO05D005179 5.5e-80 302.0 319 50.8
Sp3g12180 Schrenkiella parvula HOM05D004436 ORTHO05D005179 1.2e-79 300.8 316 49.7
EL10Ac7g16380 Beta vulgaris HOM05D004436 ORTHO05D005179 2.7e-79 299.7 316 50.6
Thhalv10020760m.g Eutrema salsugineum HOM05D004436 ORTHO05D005179 2.7e-79 299.7 316 50.3
RcHm_v2.0_Chr2g0166351 Rosa chinensis HOM05D004436 ORTHO05D005179 3.9e-78 295.8 315 49.2
CDE07G0038 Ceratophyllum demersum HOM05D004436 ORTHO05D005179 8.7e-78 294.7 334 47.3
Lalb_Chr08g0233321 Lupinus albus HOM05D004436 ORTHO05D005179 1.3e-76 290.8 315 51.1
Aqoxy2G00706 Aquilegia oxysepala HOM05D004436 ORTHO05D005179 1.6e-76 290.4 317 48.3
FvH4_6g47280 Fragaria vesca HOM05D004436 ORTHO05D005179 1.6e-76 290.4 323 48.3
EL10Ac7g16378 Beta vulgaris HOM05D004436 ORTHO05D005179 1.8e-75 287.0 316 49.4
AUR62009860 Chenopodium quinoa HOM05D004436 ORTHO05D005179 1.8e-75 287.0 317 48.3
Ca_02096_v3 Cicer arietinum L. HOM05D004436 ORTHO05D005179 3.1e-75 286.2 314 50.0
Ah.07g197300 Amaranthus hybridus HOM05D004436 ORTHO05D005179 4.0e-75 285.8 319 49.5
TPR.G13789 Trifolium pratense HOM05D004436 ORTHO05D005179 4.0e-75 285.8 314 48.7
Medtr7g104810 Medicago truncatula HOM05D004436 ORTHO05D005179 6.9e-75 285.0 315 47.6
Actinidia21779 Actinidia chinensis HOM05D004436 ORTHO05D005179 1.5e-74 283.9 320 51.2
AL3G26120 Arabidopsis lyrata HOM05D004436 ORTHO05D005179 1.5e-74 283.9 317 46.4
arahy.Tifrunner.gnm1.ann1.4RDH3B Arachis hypogaea HOM05D004436 ORTHO05D005179 3.4e-74 282.7 316 48.1
arahy.Tifrunner.gnm1.ann1.0TY6IG Arachis hypogaea HOM05D004436 ORTHO05D005179 5.8e-74 282.0 316 48.1
QL05p009436 Quercus lobata HOM05D004436 ORTHO05D005179 1.3e-73 280.8 519 35.5
Medtr2g037880 Medicago truncatula HOM05D004436 ORTHO05D005179 2.2e-73 280.0 312 47.1
Carub.0003s1351 Capsella rubella HOM05D004436 ORTHO05D005179 5.5e-72 275.4 313 46.0
unitig_26.g9010 Utricularia gibba HOM05D000572 ORTHO05D002399 9.3e-72 274.6 320 46.9
AUR62001510 Chenopodium quinoa HOM05D004436 ORTHO05D005179 2.7e-71 273.1 345 43.8
Phvul.009G236700 Phaseolus vulgaris HOM05D004436 ORTHO05D005179 2.7e-71 273.1 316 48.1
A01p39710 Brassica napus HOM05D004436 ORTHO05D005179 1.3e-70 270.8 315 47.0
BraA01t04010Z Brassica rapa HOM05D004436 ORTHO05D005179 1.3e-70 270.8 315 47.0
BcaC09g48383 Brassica carinata HOM05D004436 ORTHO05D005179 3.0e-70 269.6 315 46.3
C01p50660 Brassica napus HOM05D004436 ORTHO05D005179 3.0e-70 269.6 315 46.3
BolC1t05015H Brassica oleracea HOM05D004436 ORTHO05D005179 3.0e-70 269.6 315 46.3
AT3G13940 Arabidopsis thaliana HOM05D004436 ORTHO05D005179 3.3e-69 266.2 314 46.2
BcaB04g20967 Brassica carinata HOM05D004436 ORTHO05D005179 4.3e-69 265.8 320 47.5
Psat1g144000 Pisum sativum HOM05D004436 ORTHO05D005179 2.1e-68 263.5 313 45.4
CARHR088750 Cardamine hirsuta HOM05D004436 ORTHO05D005179 3.7e-68 262.7 320 44.7
Medtr2g037460 Medicago truncatula HOM05D004436 ORTHO05D005179 1.8e-67 260.4 311 44.7
PSO724G1089 Papaver somniferum HOM05D004436 ORTHO05D005179 4.2e-64 249.2 324 43.2
PSO135G0558 Papaver somniferum HOM05D004436 ORTHO05D005179 1.6e-63 247.3 324 42.6
FvH4_2g14600 Fragaria vesca HOM05D004436 ORTHO05D005179 9.7e-61 238.0 298 46.0
Lj6g0018808 Lotus japonicus HOM05D004436 ORTHO05D005179 2.6e-58 229.9 247 49.8
Nn6g35749 Nelumbo nucifera HOM05D004436 ORTHO05D005179 6.5e-57 225.3 317 42.6
MD17G1172300 Malus domestica HOM05D004436 ORTHO05D005179 4.2e-56 222.6 230 50.9
FAN24G2018 Fragaria x ananassa HOM05D004436 ORTHO05D005179 1.8e-54 217.2 320 40.9
Ah.08g216510 Amaranthus hybridus HOM05D004436 ORTHO05D005179 5.1e-54 215.7 317 41.3
TPR.G16505 Trifolium pratense HOM05D004436 ORTHO05D005179 2.0e-50 203.8 219 48.9
ATR0762G049 Amborella trichopoda HOM05D004436 ORTHO05D005179 4.2e-48 196.1 351 36.5
Carub.0003s3547 Capsella rubella HOM05D004436 ORTHO05D005179 1.2e-47 194.5 207 52.7
Aqoxy7G00272 Aquilegia oxysepala HOM05D004436 ORTHO05D005179 5.2e-46 189.1 197 47.2
DCAR_023423 Daucus carota HOM05D004436 ORTHO05D005179 2.6e-45 186.8 236 43.2
FAN14G5104 Fragaria x ananassa HOM05D002326 ORTHO05D005179 2.0e-42 177.2 230 43.9
HPP92_009424 Vanilla planifolia HOM05D004436 ORTHO05D005179 3.5e-42 176.4 330 35.8
Zm00001eb166800 Zea mays HOM05D004436 ORTHO05D005179 1.0e-41 174.9 336 36.0
Os11g0615100 Oryza sativa ssp. japonica HOM05D004436 ORTHO05D005179 7.2e-40 168.7 329 37.7
Ca_27339_v3 Cicer arietinum L. HOM05D004436 ORTHO05D005179 6.7e-38 162.2 220 43.2
FAN27G1625 Fragaria x ananassa HOM05D004436 ORTHO05D005179 1.2e-37 161.4 270 38.9
Oeu004353.1 Olea europaea HOM05D004436 ORTHO05D005179 3.3e-37 159.8 110 69.1
Pp3c8_24340 Physcomitrium patens HOM05D004436 ORTHO05D005179 1.6e-34 151.0 352 33.2
AagrBONN_evm.TU.Sc2ySwM_368.2707 Anthoceros agrestis HOM05D004436 ORTHO05D005179 3.5e-34 149.8 359 30.9
SEGI_28110 Sequoiadendron giganteum HOM05D004436 ORTHO05D005179 5.0e-33 146.0 322 35.4
Aqoxy2G02914 Aquilegia oxysepala HOM05D004436 ORTHO05D005179 6.5e-33 145.6 134 54.5
THA.LOC104822769 Tarenaya hassleriana HOM05D004436 ORTHO05D005179 1.8e-30 137.5 151 52.3
Dinv21190 Davidia involucrata HOM05D004436 ORTHO05D005179 4.4e-29 132.9 108 60.2
PGSC0003DMG400002436 Solanum tuberosum HOM05D004436 ORTHO05D005179 4.8e-28 129.4 240 38.3
FAN20G3048 Fragaria x ananassa HOM05D004436 ORTHO05D005179 4.1e-27 126.3 241 35.7
Mapoly0063s0055 Marchantia polymorpha HOM05D004436 ORTHO05D005179 3.5e-26 123.2 334 32.0
AUR62000997 Chenopodium quinoa HOM05D004436 ORTHO05D005179 3.8e-25 119.8 185 40.0
Haze_06394 Corylus avellana HOM05D004436 ORTHO05D005179 5.0e-25 119.4 186 42.5
FAN15G1241 Fragaria x ananassa HOM05D004436 ORTHO05D005179 8.6e-25 118.6 290 30.7
SEGI_22335 Sequoiadendron giganteum HOM05D004436 ORTHO05D005179 5.2e-22 109.4 190 37.9
CBR_g45967 Chara braunii HOM05D004436 ORTHO05D005179 6.8e-22 109.0 413 27.1
AL1G64440 Arabidopsis lyrata HOM05D004436 ORTHO05D005179 7.0e-19 99.0 157 40.1
FAN09G3702 Fragaria x ananassa HOM05D002326 ORTHO05D005179 1.3e-17 94.7 317 26.8
Aqoxy2G02915 Aquilegia oxysepala HOM05D004436 ORTHO05D005179 5.0e-17 92.8 142 37.3
FAN02G4131 Fragaria x ananassa HOM05D002326 ORTHO05D005179 5.0e-17 92.8 318 27.0
Peaxi162Scf01131g00007 Petunia axillaris HOM05D004436 ORTHO05D005179 1.5e-16 91.3 131 42.0
Psat6g077080 Pisum sativum HOM05D001891 ORTHO05D005832 1.2e-10 71.6 123 38.2
Psat6g077120 Pisum sativum HOM05D001891 ORTHO05D005832 1.2e-10 71.6 123 38.2
Oeu027301.1 Olea europaea HOM05D004436 ORTHO05D005179 2.5e-08 63.9 129 38.8
ATR0185G001 Amborella trichopoda HOM05D004436 ORTHO05D005179 4.7e-07 59.7 71 43.7
THA.LOC104822775 Tarenaya hassleriana HOM05D004436 ORTHO05D005179 1.1e-06 58.5 63 54.0
PSO017G0055 Papaver somniferum HOM05D004436 ORTHO05D005179 1.4e-06 58.2 128 34.4
TPR.G16496 Trifolium pratense HOM05D004436 ORTHO05D005179 8.9e-06 55.5 70 41.4


User provided reference genes

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