Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc04_g01560 Coffea canephora HOM05D006977 ORTHO05D008738 1.3e-97 359.8 186 100.0
Haze_05149 Corylus avellana HOM05D006977 ORTHO05D008738 6.9e-59 231.1 181 66.9
Cfa004914 Carpinus fangiana HOM05D006977 ORTHO05D008738 3.4e-58 228.8 178 65.7
Dinv12080 Davidia involucrata HOM05D006977 ORTHO05D008738 5.0e-57 224.9 181 64.6
CSS0050251 Camellia sinensis var. sinensis HOM05D006977 ORTHO05D008738 5.1e-54 214.9 178 61.2
QL05p057365 Quercus lobata HOM05D006977 ORTHO05D008738 2.0e-53 213.0 182 63.7
Ciclev10022352m.g Citrus clementina HOM05D006977 ORTHO05D008738 6.3e-52 208.0 162 65.4
GSVIVG01028248001 Vitis vinifera HOM05D006977 ORTHO05D008738 3.5e-50 202.2 172 59.9
Cpa.g.sc112.76 Carica papaya HOM05D006977 ORTHO05D008738 5.9e-50 201.4 182 61.5
Actinidia25872 Actinidia chinensis HOM05D006977 ORTHO05D008738 6.5e-49 198.0 178 55.1
MSTRG.6995 Avicennia marina HOM05D006977 ORTHO05D008738 6.5e-49 198.0 159 62.9
Cpa.g.sc57.16 Carica papaya HOM05D006977 ORTHO05D008738 8.5e-49 197.6 174 62.1
Potri.014G112200 Populus trichocarpa HOM05D006977 ORTHO05D008738 1.1e-48 197.2 179 59.2
Lalb_Chr11g0071671 Lupinus albus HOM05D006977 ORTHO05D008738 1.9e-48 196.4 174 60.9
Thecc.01G325400 Theobroma cacao HOM05D006977 ORTHO05D008738 5.5e-48 194.9 170 60.0
Atru.chr5.861 Acer truncatum HOM05D006977 ORTHO05D008738 1.2e-47 193.7 151 68.2
Hma1.2p1_0484F.1_g162990 Hydrangea macrophylla HOM05D006977 ORTHO05D008738 1.2e-47 193.7 175 60.0
MBI19_g30288_MAGBIO Magnolia biondii HOM05D006977 ORTHO05D008738 1.6e-47 193.4 160 63.8
CiPaw.08G082500 Carya illinoinensis HOM05D006977 ORTHO05D008738 4.7e-47 191.8 181 60.2
Prupe.3G002600 Prunus persica HOM05D006977 ORTHO05D008738 8.0e-47 191.0 184 55.4
Eucgr.A01003 Eucalyptus grandis HOM05D006977 ORTHO05D008738 1.0e-46 190.7 183 59.0
Sabra14G0082500 Salix brachista HOM05D006977 ORTHO05D008738 1.0e-46 190.7 164 61.6
Glyma.04G053700 Glycine max HOM05D006977 ORTHO05D008738 1.4e-46 190.3 155 61.9
Lj5g0006261 Lotus japonicus HOM05D006977 ORTHO05D008738 1.4e-46 190.3 172 59.9
Ca_17328_v3 Cicer arietinum L. HOM05D006977 ORTHO05D008738 1.8e-46 189.9 175 58.3
ECA236G2063 Erigeron canadensis HOM05D006977 ORTHO05D008738 3.0e-46 189.1 185 53.5
VMungo0720G2811 Vigna mungo HOM05D006977 ORTHO05D008738 3.0e-46 189.1 173 57.2
PSO357G0421 Papaver somniferum HOM05D006977 ORTHO05D008738 3.9e-46 188.7 182 56.6
Nn4g24845 Nelumbo nucifera HOM05D006977 ORTHO05D008738 5.2e-46 188.3 181 56.9
Glyma.10G137900 Glycine max HOM05D006977 ORTHO05D008738 2.0e-45 186.4 182 56.0
Migut.M01655 Erythranthe guttata HOM05D006977 ORTHO05D008738 2.6e-45 186.0 182 56.6
Lsat_1_v5_gn_7_107761 Lactuca sativa HOM05D006977 ORTHO05D008738 2.6e-45 186.0 179 55.9
COL.COLO4_23128 Corchorus olitorius HOM05D006977 ORTHO05D008738 3.3e-45 185.7 179 57.0
Manes.05G008900 Manihot esculenta HOM05D006977 ORTHO05D008738 3.3e-45 185.7 189 53.4
Duzib133G0680 Durio zibethinus HOM05D006977 ORTHO05D008738 5.7e-45 184.9 179 58.1
PSO170G4516 Papaver somniferum HOM05D006977 ORTHO05D008738 5.7e-45 184.9 183 55.2
DCAR_012297 Daucus carota HOM05D006977 ORTHO05D008738 7.4e-45 184.5 173 54.3
Gohir.D11G109500 Gossypium hirsutum HOM05D006977 ORTHO05D008738 1.3e-44 183.7 179 56.4
Gorai.007G117100 Gossypium raimondii HOM05D006977 ORTHO05D008738 1.3e-44 183.7 179 56.4
Gohir.A11G104700 Gossypium hirsutum HOM05D006977 ORTHO05D008738 1.7e-44 183.3 179 56.4
Phvul.L002843 Phaseolus vulgaris HOM05D006977 ORTHO05D008738 1.7e-44 183.3 155 60.6
HanXRQChr15g0493961 Helianthus annuus HOM05D006977 ORTHO05D008738 3.7e-44 182.2 180 54.4
TWI81G0461 Tripterygium wilfordii HOM05D006977 ORTHO05D008738 4.8e-44 181.8 151 63.6
TAR362G0624 Trochodendron aralioides HOM05D006977 ORTHO05D008738 6.3e-44 181.4 183 56.8
Psat7g015240 Pisum sativum HOM05D006977 ORTHO05D008738 8.2e-44 181.0 152 62.5
Rhsim01G0293500 Rhododendron simsii HOM05D006977 ORTHO05D008738 8.2e-44 181.0 156 57.1
RcHm_v2.0_Chr3g0485771 Rosa chinensis HOM05D006977 ORTHO05D008738 1.8e-43 179.9 196 52.0
FAN19G2776 Fragaria x ananassa HOM05D006977 ORTHO05D008738 2.4e-43 179.5 196 52.0
Medtr8g103265 Medicago truncatula HOM05D006977 ORTHO05D008738 2.4e-43 179.5 154 60.4
FAN23G2129 Fragaria x ananassa HOM05D006977 ORTHO05D008738 4.1e-43 178.7 202 51.5
Aqoxy5G02822 Aquilegia oxysepala HOM05D006977 ORTHO05D008738 5.3e-43 178.3 139 62.6
arahy.Tifrunner.gnm1.ann1.KP3I1I Arachis hypogaea HOM05D006977 ORTHO05D008738 1.6e-42 176.8 169 58.6
FAN26G0658 Fragaria x ananassa HOM05D006977 ORTHO05D008738 2.0e-42 176.4 202 50.5
Duzib268G1723 Durio zibethinus HOM05D006977 ORTHO05D008738 3.5e-42 175.6 179 56.4
Hund02455 Selenicereus undatus HOM05D006977 ORTHO05D008738 5.9e-42 174.9 178 51.7
PGSC0003DMG400001120 Solanum tuberosum HOM05D006977 ORTHO05D008738 7.7e-42 174.5 148 61.5
FAN28G2841 Fragaria x ananassa HOM05D006977 ORTHO05D008738 2.2e-41 172.9 193 52.3
Lj1A7G42 Lonicera japonica HOM05D006977 ORTHO05D008738 3.8e-41 172.2 127 66.9
PGR042G1466 Punica granatum HOM05D006977 ORTHO05D008738 5.0e-41 171.8 178 54.5
arahy.Tifrunner.gnm1.ann1.PT1J72 Arachis hypogaea HOM05D006977 ORTHO05D008738 8.5e-41 171.0 147 61.9
MD09G1290400 Malus domestica HOM05D006977 ORTHO05D008738 1.1e-40 170.6 187 52.4
Solyc01g080830.3 Solanum lycopersicum HOM05D006977 ORTHO05D008738 1.5e-40 170.2 148 60.8
vmacro15094 Vaccinium macrocarpon HOM05D006977 ORTHO05D008738 1.5e-40 170.2 142 60.6
THA.LOC104799825 Tarenaya hassleriana HOM05D006977 ORTHO05D008738 4.2e-40 168.7 183 50.8
Duzib268G1378 Durio zibethinus HOM05D006977 ORTHO05D008738 7.2e-40 167.9 142 62.7
Sopen01g030650 Solanum pennellii HOM05D006977 ORTHO05D008738 9.4e-40 167.5 148 59.5
FvH4_1g26230 Fragaria vesca HOM05D006977 ORTHO05D008738 6.1e-39 164.9 156 53.8
AUR62007556 Chenopodium quinoa HOM05D006977 ORTHO05D008738 1.0e-38 164.1 159 50.3
Sed0019401 Sechium edule HOM05D006977 ORTHO05D008738 1.4e-38 163.7 176 52.8
HPP92_012764 Vanilla planifolia HOM05D006977 ORTHO05D008738 1.4e-38 163.7 158 50.6
ATR0796G043 Amborella trichopoda HOM05D006977 ORTHO05D008738 1.8e-38 163.3 176 47.7
AUR62020194 Chenopodium quinoa HOM05D006977 ORTHO05D008738 5.2e-38 161.8 156 50.0
ClCG01G007180 Citrullus lanatus HOM05D006977 ORTHO05D008738 1.2e-37 160.6 171 52.0
Oeu031543.1 Olea europaea HOM05D006977 ORTHO05D008738 1.5e-37 160.2 181 52.5
CsaV3_5G018620 Cucumis sativus L. HOM05D006977 ORTHO05D008738 2.0e-37 159.8 173 50.9
Sc02g0004000 Simmondsia chinensis HOM05D006977 ORTHO05D008738 2.0e-37 159.8 182 47.3
Carub.0006s3543 Capsella rubella HOM05D006977 ORTHO05D008738 4.4e-37 158.7 167 49.1
SalBow5G4120 Salvia bowleyana HOM05D006977 ORTHO05D008738 2.2e-36 156.4 171 53.2
AL6G51510 Arabidopsis lyrata HOM05D006977 ORTHO05D008738 3.7e-36 155.6 179 46.4
CiPaw.07G125600 Carya illinoinensis HOM05D006977 ORTHO05D008738 4.8e-36 155.2 159 57.2
AT4G01790 Arabidopsis thaliana HOM05D006977 ORTHO05D008738 1.1e-35 154.1 179 46.9
Aa31LG5G1570 Aethionema arabicum HOM05D006977 ORTHO05D008738 2.4e-35 152.9 151 51.0
BcaC01g06803 Brassica carinata HOM05D006977 ORTHO05D008738 4.1e-35 152.1 154 48.7
BolC3t16121H Brassica oleracea HOM05D006977 ORTHO05D008738 4.1e-35 152.1 154 48.7
MELO3C005192.2 Cucumis melo HOM05D006977 ORTHO05D008738 4.1e-35 152.1 173 50.3
Thhalv10029024m.g Eutrema salsugineum HOM05D006977 ORTHO05D008738 4.1e-35 152.1 173 47.4
C03p38480 Brassica napus HOM05D006977 ORTHO05D008738 7.0e-35 151.4 154 48.7
CARHR249760 Cardamine hirsuta HOM05D006977 ORTHO05D008738 1.6e-34 150.2 151 49.7
BcaB01g02378 Brassica carinata HOM05D006977 ORTHO05D008738 3.5e-34 149.1 154 46.1
Duzib268G1823 Durio zibethinus HOM05D006977 ORTHO05D008738 4.5e-34 148.7 142 59.2
Sp3g31270 Schrenkiella parvula HOM05D006977 ORTHO05D008738 5.9e-34 148.3 154 47.4
SpUn0082_0020 Schrenkiella parvula HOM05D006977 ORTHO05D008738 5.9e-34 148.3 154 47.4
SGA_v2.0_scaffold204G41642 Striga asiatica HOM05D006977 ORTHO05D008738 5.9e-34 148.3 154 55.2
Zm00001eb328690 Zea mays HOM05D006977 ORTHO05D008738 7.7e-34 147.9 158 48.1
CAN.G100.60 Capsicum annuum HOM05D006977 ORTHO05D008738 1.0e-33 147.5 121 62.0
A03p31490 Brassica napus HOM05D006977 ORTHO05D008738 2.2e-33 146.4 154 47.4
BraA03t12329Z Brassica rapa HOM05D006977 ORTHO05D008738 2.2e-33 146.4 154 47.4
Peaxi162Scf00309g00082 Petunia axillaris HOM05D006977 ORTHO05D008738 1.1e-32 144.1 120 60.0
TPR.G23504 Trifolium pratense HOM05D006977 ORTHO05D008738 1.9e-32 143.3 117 63.2
unitig_8.g4039 Utricularia gibba HOM05D006977 ORTHO05D008738 2.5e-32 142.9 159 50.9
EL10Ac6g15579 Beta vulgaris HOM05D006977 ORTHO05D008738 6.1e-31 138.3 144 50.0
Os07g0636400 Oryza sativa ssp. japonica HOM05D006977 ORTHO05D008738 1.0e-30 137.5 185 38.9
CANSAT25G0488 Cannabis sativa HOM05D006977 ORTHO05D008738 5.2e-30 135.2 159 49.7
Nitab4.5_0003092g0050 Nicotiana tabacum HOM05D006977 ORTHO05D008738 1.8e-27 126.7 133 53.4
Nitab4.5_0000222g0410 Nicotiana tabacum HOM05D006977 ORTHO05D008738 2.5e-24 116.3 107 56.1
Sp6g01640 Schrenkiella parvula HOM05D006977 ORTHO05D008738 2.5e-24 116.3 120 44.2
MD17G1285100 Malus domestica HOM05D006977 ORTHO05D008738 3.0e-22 109.4 84 61.9
CDE02G1393 Ceratophyllum demersum HOM05D006977 ORTHO05D008738 4.9e-20 102.1 74 60.8
Mapoly0147s0029 Marchantia polymorpha HOM05D006977 ORTHO05D008738 1.4e-11 73.9 163 35.6
Pp3c20_22530 Physcomitrium patens HOM05D006977 ORTHO05D008738 1.4e-11 73.9 158 36.1
Duzib138G1646 Durio zibethinus HOM05D006977 ORTHO05D008738 7.0e-11 71.6 67 56.7
CDE04G2744 Ceratophyllum demersum HOM05D006977 ORTHO05D008738 7.8e-10 68.2 80 45.0
TWI81G0948 Tripterygium wilfordii HOM05D006977 ORTHO05D008738 6.8e-06 55.1 40 62.5


User provided reference genes

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