Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc04_g01400 Coffea canephora HOM05D006979 ORTHO05D008857 5.3e-145 517.7 265 100.0
Nitab4.5_0001199g0130 Nicotiana tabacum HOM05D006979 ORTHO05D008857 9.1e-97 357.5 240 74.6
Peaxi162Scf00177g00513 Petunia axillaris HOM05D006979 ORTHO05D008857 6.6e-95 351.3 237 74.3
Dinv04035 Davidia involucrata HOM05D006979 ORTHO05D008857 1.5e-94 350.1 241 75.1
CAN.G1368.7 Capsicum annuum HOM05D006979 ORTHO05D008857 3.3e-94 349.0 240 72.9
Nitab4.5_0000189g0250 Nicotiana tabacum HOM05D006979 ORTHO05D008857 3.3e-94 349.0 240 73.3
SGA_v2.0_scaffold4G02061 Striga asiatica HOM05D006979 ORTHO05D008857 4.7e-93 345.1 240 72.9
PGSC0003DMG400011606 Solanum tuberosum HOM05D006979 ORTHO05D008857 1.4e-92 343.6 240 70.8
Oeu015481.1 Olea europaea HOM05D006979 ORTHO05D008857 2.3e-92 342.8 241 73.0
Migut.D00941 Erythranthe guttata HOM05D006979 ORTHO05D008857 4.0e-92 342.0 240 71.7
Actinidia32181 Actinidia chinensis HOM05D006979 ORTHO05D008857 1.2e-91 340.5 241 74.3
Solyc12g049280.3 Solanum lycopersicum HOM05D006979 ORTHO05D008857 2.6e-91 339.3 239 70.3
Ciclev10026147m.g Citrus clementina HOM05D006979 ORTHO05D008857 9.8e-91 337.4 243 71.2
Manes.11G021300 Manihot esculenta HOM05D006979 ORTHO05D008857 1.7e-90 336.7 241 71.4
Potri.003G063800 Populus trichocarpa HOM05D006979 ORTHO05D008857 1.7e-90 336.7 241 72.6
Rhsim08G0237900 Rhododendron simsii HOM05D006979 ORTHO05D008857 2.2e-90 336.3 241 71.0
TAR383G0452 Trochodendron aralioides HOM05D006979 ORTHO05D008857 2.2e-90 336.3 240 71.2
vmacro15023 Vaccinium macrocarpon HOM05D006979 ORTHO05D008857 3.7e-90 335.5 241 70.5
CiPaw.01G219600 Carya illinoinensis HOM05D006979 ORTHO05D008857 4.9e-90 335.1 241 70.1
Sopen12g023760 Solanum pennellii HOM05D006979 ORTHO05D008857 1.8e-89 333.2 239 69.5
CSS0018635 Camellia sinensis var. sinensis HOM05D006979 ORTHO05D008857 2.4e-89 332.8 241 71.4
SalBow7G2243 Salvia bowleyana HOM05D006979 ORTHO05D008857 5.4e-89 331.6 242 70.7
Lj9A522T69 Lonicera japonica HOM05D006979 ORTHO05D008857 1.2e-88 330.5 245 69.8
CSS0026622 Camellia sinensis var. sinensis HOM05D006979 ORTHO05D008857 1.6e-88 330.1 243 70.4
MD09G1184500 Malus domestica HOM05D006979 ORTHO05D008857 3.9e-87 325.5 242 68.6
AUR62009880 Chenopodium quinoa HOM05D006979 ORTHO05D008857 6.6e-87 324.7 243 69.5
FvH4_6g34590 Fragaria vesca HOM05D006979 ORTHO05D008857 6.6e-87 324.7 241 69.7
FAN09G4734 Fragaria x ananassa HOM05D006979 ORTHO05D008857 6.6e-87 324.7 241 69.7
COL.COLO4_30769 Corchorus olitorius HOM05D006979 ORTHO05D008857 8.6e-87 324.3 240 69.2
Atru.chr1.3953 Acer truncatum HOM05D006979 ORTHO05D008857 1.5e-86 323.6 242 67.8
Prupe.3G042700 Prunus persica HOM05D006979 ORTHO05D008857 1.5e-86 323.6 241 69.3
Cfa003539 Carpinus fangiana HOM05D006979 ORTHO05D008857 1.9e-86 323.2 240 68.8
ECA234G1570 Erigeron canadensis HOM05D006979 ORTHO05D008857 1.9e-86 323.2 241 67.2
AUR62001490 Chenopodium quinoa HOM05D006979 ORTHO05D008857 3.3e-86 322.4 242 68.2
Atru.chr1.3954 Acer truncatum HOM05D006979 ORTHO05D008857 5.6e-86 321.6 244 66.8
Sabra03G0037400 Salix brachista HOM05D006979 ORTHO05D008857 5.6e-86 321.6 247 68.4
RcHm_v2.0_Chr2g0145111 Rosa chinensis HOM05D006979 ORTHO05D008857 9.5e-86 320.9 242 69.8
GSVIVG01016774001 Vitis vinifera HOM05D006979 ORTHO05D008857 2.1e-85 319.7 240 68.8
Lj3g0022239 Lotus japonicus HOM05D006979 ORTHO05D008857 3.1e-84 315.8 240 65.8
QL05p008051 Quercus lobata HOM05D006979 ORTHO05D008857 3.1e-84 315.8 291 58.8
Thecc.06G118900 Theobroma cacao HOM05D006979 ORTHO05D008857 4.0e-84 315.5 240 66.7
Lsat_1_v5_gn_5_135940 Lactuca sativa HOM05D006979 ORTHO05D008857 5.2e-84 315.1 259 62.2
TWI31G0112 Tripterygium wilfordii HOM05D006979 ORTHO05D008857 6.8e-84 314.7 248 67.7
Gohir.D05G142800 Gossypium hirsutum HOM05D006979 ORTHO05D008857 2.0e-83 313.2 242 66.5
Gorai.009G146700 Gossypium raimondii HOM05D006979 ORTHO05D008857 2.0e-83 313.2 242 66.5
Cpa.g.sc25.110 Carica papaya HOM05D006979 ORTHO05D008857 2.6e-83 312.8 240 67.5
Lalb_Chr04g0263421 Lupinus albus HOM05D006979 ORTHO05D008857 4.4e-83 312.0 242 66.9
Duzib235G1224 Durio zibethinus HOM05D006979 ORTHO05D008857 5.8e-83 311.6 241 68.0
CANSAT56G2284 Cannabis sativa HOM05D006979 ORTHO05D008857 1.7e-82 310.1 242 66.5
Phvul.010G133500 Phaseolus vulgaris HOM05D006979 ORTHO05D008857 2.2e-82 309.7 241 64.7
Glyma.16G005300 Glycine max HOM05D006979 ORTHO05D008857 3.7e-82 308.9 241 64.3
Glyma.07G036000 Glycine max HOM05D006979 ORTHO05D008857 8.3e-82 307.8 240 64.2
Sed0019772 Sechium edule HOM05D006979 ORTHO05D008857 1.4e-81 307.0 241 64.3
TPR.G16442 Trifolium pratense HOM05D006979 ORTHO05D008857 5.4e-81 305.1 242 63.2
Aqoxy5G02291 Aquilegia oxysepala HOM05D006979 ORTHO05D008857 1.6e-80 303.5 241 64.3
Hund05741 Selenicereus undatus HOM05D006979 ORTHO05D008857 1.7e-79 300.1 295 55.6
VMungo0331G0985 Vigna mungo HOM05D006979 ORTHO05D008857 2.3e-79 299.7 252 61.5
unitig_8.g3563 Utricularia gibba HOM05D006979 ORTHO05D008857 6.6e-79 298.1 240 65.0
Eucgr.F03173 Eucalyptus grandis HOM05D006979 ORTHO05D008857 1.9e-78 296.6 250 62.4
CsaV3_7G034520 Cucumis sativus L. HOM05D006979 ORTHO05D008857 2.5e-78 296.2 241 63.1
Medtr8g019510 Medicago truncatula HOM05D006979 ORTHO05D008857 7.3e-78 294.7 242 61.2
THA.LOC104813956 Tarenaya hassleriana HOM05D006979 ORTHO05D008857 2.1e-77 293.1 246 61.4
FAN05G0457 Fragaria x ananassa HOM05D006979 ORTHO05D008857 2.8e-77 292.7 219 69.4
ATR0598G212 Amborella trichopoda HOM05D006979 ORTHO05D008857 3.1e-76 289.3 241 61.0
CDE05G0714 Ceratophyllum demersum HOM05D006979 ORTHO05D008857 5.8e-75 285.0 232 60.8
Os03g0410700 Oryza sativa ssp. japonica HOM05D006979 ORTHO05D008857 1.3e-74 283.9 236 63.1
PSO210G5065 Papaver somniferum HOM05D006979 ORTHO05D008857 1.1e-73 280.8 240 62.5
BcaNung07150 Brassica carinata HOM05D006979 ORTHO05D008857 9.2e-73 277.7 246 58.9
ClCG09G000940 Citrullus lanatus HOM05D006979 ORTHO05D008857 9.2e-73 277.7 287 53.3
Sc08g0005680 Simmondsia chinensis HOM05D006979 ORTHO05D008857 1.6e-72 276.9 240 59.2
PSO210G4684 Papaver somniferum HOM05D006979 ORTHO05D008857 2.7e-72 276.2 240 61.7
MBI19_g11849_MAGBIO Magnolia biondii HOM05D006979 ORTHO05D008857 3.5e-72 275.8 239 63.2
AL2G32310 Arabidopsis lyrata HOM05D006979 ORTHO05D008857 1.7e-71 273.5 246 56.5
C06p46960 Brassica napus HOM05D006979 ORTHO05D008857 5.1e-71 271.9 245 57.1
BolC6t39737H Brassica oleracea HOM05D006979 ORTHO05D008857 5.1e-71 271.9 245 57.1
PGR119G0938 Punica granatum HOM05D006979 ORTHO05D008857 6.6e-71 271.6 242 59.9
BcaC08g46707 Brassica carinata HOM05D006979 ORTHO05D008857 3.3e-70 269.2 245 57.1
Sp5g27700 Schrenkiella parvula HOM05D006979 ORTHO05D008857 3.3e-70 269.2 245 55.5
Carub.0002s1948 Capsella rubella HOM05D006979 ORTHO05D008857 7.3e-70 268.1 245 55.5
arahy.Tifrunner.gnm1.ann1.4E7AR5 Arachis hypogaea HOM05D006979 ORTHO05D008857 8.1e-69 264.6 217 62.7
arahy.Tifrunner.gnm1.ann1.IV001U Arachis hypogaea HOM05D006979 ORTHO05D008857 5.2e-68 261.9 217 62.2
A07p38800 Brassica napus HOM05D006979 ORTHO05D008857 8.9e-68 261.2 267 52.4
BraA07t31434Z Brassica rapa HOM05D006979 ORTHO05D008857 8.9e-68 261.2 267 52.4
Thhalv10018914m.g Eutrema salsugineum HOM05D006979 ORTHO05D008857 8.9e-68 261.2 245 55.1
Gohir.A05G140600 Gossypium hirsutum HOM05D006979 ORTHO05D008857 2.6e-67 259.6 242 58.7
Haze_16022 Corylus avellana HOM05D006979 ORTHO05D008857 7.5e-67 258.1 240 59.6
Aa31LG4G3010 Aethionema arabicum HOM05D006979 ORTHO05D008857 1.9e-65 253.4 247 55.1
Psat4g183680 Pisum sativum HOM05D006979 ORTHO05D008857 4.6e-64 248.8 209 61.7
Ca_05018_v3 Cicer arietinum L. HOM05D006979 ORTHO05D008857 1.0e-63 247.7 194 63.9
Hma1.2p1_0496F.1_g166210 Hydrangea macrophylla HOM05D006979 ORTHO05D008857 1.1e-60 237.7 170 71.2
EL10Ac7g16405 Beta vulgaris HOM05D006979 ORTHO05D008857 2.4e-60 236.5 296 47.3
Pp3c11_2100 Physcomitrium patens HOM05D006979 ORTHO05D008857 8.4e-58 228.0 247 50.6
Nn6g35601 Nelumbo nucifera HOM05D006979 ORTHO05D008857 1.2e-56 224.2 241 52.3
Zm00001eb019720 Zea mays HOM05D006979 ORTHO05D008857 1.3e-55 220.7 188 61.7
CARHR065560 Cardamine hirsuta HOM05D006979 ORTHO05D008857 1.1e-54 217.6 190 56.8
Hma1.2p1_0496F.1_g166200 Hydrangea macrophylla HOM05D006979 ORTHO05D008857 8.1e-53 211.5 209 59.3
AT1G72640 Arabidopsis thaliana HOM05D006979 ORTHO05D008857 3.1e-52 209.5 190 57.9
FAN14G3231 Fragaria x ananassa HOM05D006979 ORTHO05D008857 3.2e-49 199.5 161 63.4
AagrBONN_evm.TU.Sc2ySwM_362.1497 Anthoceros agrestis HOM05D006979 ORTHO05D008857 7.6e-43 178.3 195 51.3
SMO117G0249 Selaginella moellendorffii HOM05D006979 ORTHO05D008857 3.2e-41 172.9 237 40.9
MELO3C024358.2 Cucumis melo HOM05D006979 ORTHO05D008857 7.4e-38 161.8 132 62.1
SEGI_25115 Sequoiadendron giganteum HOM05D006979 ORTHO05D008857 1.3e-37 161.0 132 60.6
Ah.08g216750 Amaranthus hybridus HOM05D006979 ORTHO05D008857 1.9e-30 137.1 128 57.0
Mapoly0030s0153 Marchantia polymorpha HOM05D006979 ORTHO05D008857 3.2e-25 119.8 137 47.4
CDE05G2075 Ceratophyllum demersum HOM05D006979 ORTHO05D008857 3.2e-17 93.2 188 33.5
MCO12G160 Micromonas commoda HOM05D006979 ORTHO05D008857 1.1e-14 84.7 268 30.6
Medtr8g019490 Medicago truncatula HOM05D006979 ORTHO05D008857 1.5e-14 84.3 99 46.5
Cre02.g095133 Chlamydomonas reinhardtii HOM05D006979 ORTHO05D008857 1.4e-12 77.8 103 42.7
RcHm_v2.0_Chr6g0307231 Rosa chinensis HOM05D006979 ORTHO05D008857 5.9e-11 72.4 55 65.5
RcHm_v2.0_Chr3g0497381 Rosa chinensis HOM05D006979 ORTHO05D008857 3.8e-10 69.7 55 65.5
MD03G1169200 Malus domestica HOM05D006655 ORTHO05D007986 8.5e-10 68.6 245 28.2
Cpa.g.sc84.14 Carica papaya HOM05D006655 ORTHO05D007986 2.5e-09 67.0 269 26.4
Haze_23196 Corylus avellana HOM05D006655 ORTHO05D007986 4.2e-09 66.2 269 26.8
PRCOL_00001479 Prasinoderma coloniale HOM05D006979 ORTHO05D008857 5.5e-09 65.9 121 37.2
Hund21967 Selenicereus undatus HOM05D006655 ORTHO05D007986 5.5e-09 65.9 269 26.4
AUR62039838 Chenopodium quinoa HOM05D006655 ORTHO05D007986 9.4e-09 65.1 249 28.1
AUR62000173 Chenopodium quinoa HOM05D006655 ORTHO05D007986 2.1e-08 63.9 249 27.7
RcHm_v2.0_Chr5g0050831 Rosa chinensis HOM05D006655 ORTHO05D007986 2.1e-08 63.9 245 27.8
EL10Ac4g10174 Beta vulgaris HOM05D006655 ORTHO05D007986 2.7e-08 63.5 269 26.4
Ciclev10015876m.g Citrus clementina HOM05D006655 ORTHO05D007986 2.7e-08 63.5 249 27.7
Zm00001eb394530 Zea mays HOM05D006655 ORTHO05D007986 2.7e-08 63.5 243 26.7
C07p58710 Brassica napus HOM05D006655 ORTHO05D007986 3.6e-08 63.2 275 26.2
GSVIVG01037232001 Vitis vinifera HOM05D006655 ORTHO05D007986 6.1e-08 62.4 267 25.8
FvH4_3g28150 Fragaria vesca HOM05D006655 ORTHO05D007986 7.9e-08 62.0 245 28.2
FAN11G1204 Fragaria x ananassa HOM05D006655 ORTHO05D007986 7.9e-08 62.0 245 28.2
Lsat_1_v5_gn_1_77640 Lactuca sativa HOM05D006655 ORTHO05D007986 7.9e-08 62.0 261 27.2
Thhalv10025684m.g Eutrema salsugineum HOM05D006655 ORTHO05D007986 1.0e-07 61.6 249 26.9
Mapoly0030s0154 Marchantia polymorpha HOM05D006979 ORTHO05D008857 1.0e-07 61.6 54 48.1
BcaNung04132 Brassica carinata HOM05D006655 ORTHO05D007986 1.8e-07 60.8 249 26.5
CARHR239410 Cardamine hirsuta HOM05D006655 ORTHO05D007986 1.8e-07 60.8 249 26.9
Cfa009833 Carpinus fangiana HOM05D006655 ORTHO05D007986 1.8e-07 60.8 269 25.7
AT4G31530 Arabidopsis thaliana HOM05D006655 ORTHO05D007986 2.3e-07 60.5 249 27.3
THA.LOC104816930 Tarenaya hassleriana HOM05D006655 ORTHO05D007986 2.3e-07 60.5 249 26.5
Dinv36200 Davidia involucrata HOM05D006655 ORTHO05D007986 3.0e-07 60.1 245 26.1
Atru.chr3.2616 Acer truncatum HOM05D006655 ORTHO05D007986 3.9e-07 59.7 240 27.1
AL7G20510 Arabidopsis lyrata HOM05D006655 ORTHO05D007986 3.9e-07 59.7 249 26.9
DCAR_029978 Daucus carota HOM05D006655 ORTHO05D007986 3.9e-07 59.7 245 27.3
COL.COLO4_04115 Corchorus olitorius HOM05D006655 ORTHO05D007986 5.1e-07 59.3 243 26.7
FAN21G0719 Fragaria x ananassa HOM05D006655 ORTHO05D007986 5.1e-07 59.3 245 27.8
Sp7g29360 Schrenkiella parvula HOM05D006655 ORTHO05D007986 5.1e-07 59.3 249 26.1
Duzib168G2063 Durio zibethinus HOM05D006655 ORTHO05D007986 6.7e-07 58.9 243 26.7
ECA248G0748 Erigeron canadensis HOM05D006655 ORTHO05D007986 6.7e-07 58.9 245 26.5
Cc01_g05880 Coffea canephora HOM05D006655 ORTHO05D007986 8.8e-07 58.5 261 24.1
FAN16G3233 Fragaria x ananassa HOM05D006655 ORTHO05D007986 8.8e-07 58.5 245 27.3
MBI13_g19379_MAGBIO Magnolia biondii HOM05D006655 ORTHO05D007986 8.8e-07 58.5 267 26.6
Gohir.A09G111300 Gossypium hirsutum HOM05D006655 ORTHO05D007986 1.1e-06 58.2 238 26.5
Actinidia06937 Actinidia chinensis HOM05D006655 ORTHO05D007986 1.5e-06 57.8 273 24.5
MELO3C015152.2 Cucumis melo HOM05D006655 ORTHO05D007986 1.5e-06 57.8 262 25.2
Gohir.D09G107900 Gossypium hirsutum HOM05D006655 ORTHO05D007986 2.0e-06 57.4 243 26.3
Gorai.006G125600 Gossypium raimondii HOM05D006655 ORTHO05D007986 2.0e-06 57.4 243 26.3
TWI38G0712 Tripterygium wilfordii HOM05D006655 ORTHO05D007986 2.0e-06 57.4 259 25.1
Aqoxy1G00312 Aquilegia oxysepala HOM05D006655 ORTHO05D007986 2.6e-06 57.0 250 25.6
CiPaw.14G115600 Carya illinoinensis HOM05D006655 ORTHO05D007986 2.6e-06 57.0 270 25.2
ClCG03G012910 Citrullus lanatus HOM05D006655 ORTHO05D007986 2.6e-06 57.0 257 26.1
HPP92_025004 Vanilla planifolia HOM05D006655 ORTHO05D007986 2.6e-06 57.0 245 26.1
MSTRG.18452 Avicennia marina HOM05D006655 ORTHO05D007986 3.3e-06 56.6 245 25.3
A03p60830 Brassica napus HOM05D006655 ORTHO05D007986 3.3e-06 56.6 247 25.5
Rhsim13G0216500 Rhododendron simsii HOM05D006655 ORTHO05D007986 3.3e-06 56.6 266 26.3
Carub.0007s0904 Capsella rubella HOM05D006655 ORTHO05D007986 5.7e-06 55.8 249 25.7
QL01p017764 Quercus lobata HOM05D006655 ORTHO05D007986 5.7e-06 55.8 248 25.0
BolC7t46320H Brassica oleracea HOM05D006655 ORTHO05D007986 7.4e-06 55.5 239 25.5
Medtr8g010700 Medicago truncatula HOM05D006655 ORTHO05D007986 7.4e-06 55.5 245 27.8
Thecc.09G243400 Theobroma cacao HOM05D006655 ORTHO05D007986 7.4e-06 55.5 243 26.7
arahy.Tifrunner.gnm1.ann1.760I9C Arachis hypogaea HOM05D006655 ORTHO05D007986 9.7e-06 55.1 238 25.2
BraA03t15119Z Brassica rapa HOM05D006655 ORTHO05D007986 9.7e-06 55.1 244 25.4
PSO339G6694 Papaver somniferum HOM05D006655 ORTHO05D007986 9.7e-06 55.1 238 25.6
PGR102G2275 Punica granatum HOM05D006655 ORTHO05D007986 9.7e-06 55.1 277 25.3


User provided reference genes

Program Settings