Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc04_g00890 Coffea canephora HOM05D005068 ORTHO05D007561 0.0e+00 1837.8 1023 100.0
CSS0048439 Camellia sinensis var. sinensis HOM05D005068 ORTHO05D007561 0.0e+00 1136.7 1039 63.4
CSS0009347 Camellia sinensis var. sinensis HOM05D005068 ORTHO05D007561 0.0e+00 1134.0 1039 63.2
TAR628G1511 Trochodendron aralioides HOM05D005068 ORTHO05D007561 0.0e+00 1102.0 1024 62.5
Manes.09G018800 Manihot esculenta HOM05D005068 ORTHO05D007561 0.0e+00 1085.1 1052 60.3
CAN.G790.67 Capsicum annuum HOM05D005068 ORTHO05D007561 4.9e-311 1071.2 1015 60.1
Sed0003275 Sechium edule HOM05D005068 ORTHO05D007561 1.0e-310 1070.1 1012 62.1
CiPaw.01G213900 Carya illinoinensis HOM05D005068 ORTHO05D007561 5.3e-310 1067.8 1050 59.2
GSVIVG01016696001 Vitis vinifera HOM05D005068 ORTHO05D007561 4.2e-307 1058.1 1028 59.2
Nitab4.5_0003981g0040 Nicotiana tabacum HOM05D005068 ORTHO05D007561 1.2e-306 1056.6 1021 63.3
Potri.001G164100 Populus trichocarpa HOM05D005068 ORTHO05D007561 2.7e-306 1055.4 1038 59.2
Nitab4.5_0009947g0020 Nicotiana tabacum HOM05D005068 ORTHO05D007561 3.6e-306 1055.0 893 66.1
Sed0017975 Sechium edule HOM05D005068 ORTHO05D007561 4.6e-306 1054.7 1023 59.3
Solyc03g123530.4 Solanum lycopersicum HOM05D005068 ORTHO05D007561 6.1e-306 1054.3 1019 59.3
Gorai.011G056800 Gossypium raimondii HOM05D005068 ORTHO05D007561 7.4e-304 1047.3 1021 61.9
Ciclev10024779m.g Citrus clementina HOM05D005068 ORTHO05D007561 1.3e-303 1046.6 1059 59.9
Gohir.D10G053200 Gossypium hirsutum HOM05D005068 ORTHO05D007561 6.3e-303 1044.3 1022 61.7
Eucgr.J02606 Eucalyptus grandis HOM05D005068 ORTHO05D007561 3.4e-301 1038.5 1039 61.7
QL05p001958 Quercus lobata HOM05D005068 ORTHO05D007561 3.4e-301 1038.5 1076 58.6
Peaxi162Scf00038g02247 Petunia axillaris HOM05D005068 ORTHO05D007561 5.9e-301 1037.7 1027 58.9
Gohir.A10G051500 Gossypium hirsutum HOM05D005068 ORTHO05D007561 2.2e-300 1035.8 1022 62.6
Atru.chr1.4129 Acer truncatum HOM05D005068 ORTHO05D007561 5.0e-300 1034.6 1046 60.4
Glyma.07G043700 Glycine max HOM05D005068 ORTHO05D007561 2.5e-299 1032.3 1028 59.2
PGR102G2847 Punica granatum HOM05D005068 ORTHO05D007561 2.5e-299 1032.3 1007 61.2
TWI59G1220 Tripterygium wilfordii HOM05D005068 ORTHO05D007561 3.2e-299 1031.9 949 62.4
Cfa003490 Carpinus fangiana HOM05D005068 ORTHO05D007561 2.3e-297 1025.8 1057 56.4
arahy.Tifrunner.gnm1.ann1.JS5XG8 Arachis hypogaea HOM05D005068 ORTHO05D007561 1.5e-296 1023.1 1054 57.1
Medtr5g019130 Medicago truncatula HOM05D005068 ORTHO05D007561 1.5e-296 1023.1 1033 60.6
Phvul.010G125200 Phaseolus vulgaris HOM05D005068 ORTHO05D007561 2.6e-296 1022.3 1041 57.7
Hund18654 Selenicereus undatus HOM05D005068 ORTHO05D007561 2.6e-296 1022.3 1037 58.1
SalBow6G5915 Salvia bowleyana HOM05D005068 ORTHO05D007561 5.7e-296 1021.1 914 63.5
Prupe.3G034700 Prunus persica HOM05D005068 ORTHO05D007561 7.4e-296 1020.8 891 64.3
Lj3g0023295 Lotus japonicus HOM05D005068 ORTHO05D007561 2.8e-295 1018.8 883 63.9
MELO3C024322.2 Cucumis melo HOM05D005068 ORTHO05D007561 8.2e-295 1017.3 1021 60.0
MD17G1151100 Malus domestica HOM05D005068 ORTHO05D007561 4.1e-294 1015.0 1048 57.9
CsaV3_7G034120 Cucumis sativus L. HOM05D005068 ORTHO05D007561 5.9e-293 1011.1 1018 58.1
HanXRQChr12g0360151 Helianthus annuus HOM05D005068 ORTHO05D007561 1.3e-292 1010.0 977 59.9
Lalb_Chr04g0253821 Lupinus albus HOM05D005068 ORTHO05D007561 1.3e-292 1010.0 987 59.9
MD09G1175700 Malus domestica HOM05D005068 ORTHO05D007561 3.8e-292 1008.4 897 63.5
PSO384G5027 Papaver somniferum HOM05D005068 ORTHO05D007561 6.5e-292 1007.7 1085 55.9
CANSAT01G1537 Cannabis sativa HOM05D005068 ORTHO05D007561 8.5e-292 1007.3 1024 60.6
Sopen03g041300 Solanum pennellii HOM05D005068 ORTHO05D007561 1.9e-291 1006.1 1034 57.2
VMungo0331G1431 Vigna mungo HOM05D005068 ORTHO05D007561 1.4e-289 1000.0 1021 57.8
Thecc.06G127400 Theobroma cacao HOM05D005068 ORTHO05D007561 5.2e-289 998.0 1034 60.3
PSO339G5314 Papaver somniferum HOM05D005068 ORTHO05D007561 8.8e-289 997.3 1083 57.6
Lj5A31T61 Lonicera japonica HOM05D005068 ORTHO05D007561 2.0e-288 996.1 865 65.3
Psat2g016360 Pisum sativum HOM05D005068 ORTHO05D007561 4.4e-288 995.0 903 62.1
Oeu000383.1 Olea europaea HOM05D005068 ORTHO05D007561 5.7e-288 994.6 1024 57.3
Aqoxy1G00349 Aquilegia oxysepala HOM05D005068 ORTHO05D007561 7.4e-288 994.2 996 58.1
Sabra01G0128700 Salix brachista HOM05D005068 ORTHO05D007561 2.2e-287 992.6 1034 58.3
Lsat_1_v5_gn_5_136720 Lactuca sativa HOM05D005068 ORTHO05D007561 3.7e-287 991.9 994 58.7
Peaxi162Scf00535g00325 Petunia axillaris HOM05D005068 ORTHO05D007561 1.1e-286 990.3 1015 58.0
MSTRG.22527 Avicennia marina HOM05D005068 ORTHO05D007561 2.4e-286 989.2 1043 57.5
Medtr4g119670 Medicago truncatula HOM05D005068 ORTHO05D007561 1.2e-285 986.9 1012 58.3
Cpa.g.sc25.173 Carica papaya HOM05D005068 ORTHO05D007561 2.9e-284 982.2 1080 54.4
ECA234G0903 Erigeron canadensis HOM05D005068 ORTHO05D007561 8.5e-284 980.7 981 57.9
EL10Ac7g16459 Beta vulgaris HOM05D005068 ORTHO05D007561 1.9e-283 979.5 1074 54.0
AL2G32110 Arabidopsis lyrata HOM05D005068 ORTHO05D007561 1.2e-282 976.9 920 60.4
AUR62009935 Chenopodium quinoa HOM05D005068 ORTHO05D007561 1.0e-281 973.8 1027 57.6
FAN05G3041 Fragaria x ananassa HOM05D005068 ORTHO05D007561 3.0e-281 972.2 1029 56.6
AT1G72440 Arabidopsis thaliana HOM05D005068 ORTHO05D007561 1.5e-280 969.9 918 59.7
Glyma.16G012100 Glycine max HOM05D005068 ORTHO05D007561 9.7e-280 967.2 1016 58.6
Sp5g27520 Schrenkiella parvula HOM05D005068 ORTHO05D007561 3.7e-279 965.3 916 60.2
RcHm_v2.0_Chr2g0147011 Rosa chinensis HOM05D005068 ORTHO05D007561 4.8e-279 964.9 1015 55.6
Ca_23422_v3 Cicer arietinum L. HOM05D005068 ORTHO05D007561 3.1e-278 962.2 1047 56.4
THA.LOC104808063 Tarenaya hassleriana HOM05D005068 ORTHO05D007561 7.0e-278 961.1 934 60.0
FvH4_6g35460 Fragaria vesca HOM05D005068 ORTHO05D007561 1.6e-277 959.9 1026 56.3
FAN14G5424 Fragaria x ananassa HOM05D005068 ORTHO05D007561 2.0e-277 959.5 1024 56.5
Rhsim08G0242500 Rhododendron simsii HOM05D005068 ORTHO05D007561 2.7e-277 959.1 1013 58.1
TPR.G16658 Trifolium pratense HOM05D005068 ORTHO05D007561 4.5e-277 958.4 935 58.8
Ca_30848_v3 Cicer arietinum L. HOM05D005068 ORTHO05D007561 1.7e-276 956.4 873 60.8
Haze_16103 Corylus avellana HOM05D005068 ORTHO05D007561 1.5e-275 953.4 1190 50.2
DCAR_026429 Daucus carota HOM05D005068 ORTHO05D007561 2.5e-275 952.6 1047 55.9
AUR62001432 Chenopodium quinoa HOM05D005068 ORTHO05D007561 4.2e-275 951.8 1043 54.4
CARHR065370 Cardamine hirsuta HOM05D005068 ORTHO05D007561 1.7e-271 939.9 1034 58.8
BcaB03g14995 Brassica carinata HOM05D005068 ORTHO05D007561 2.4e-270 936.0 913 58.9
Carub.0002s1929 Capsella rubella HOM05D005068 ORTHO05D007561 3.1e-270 935.6 911 58.5
Thhalv10018056m.g Eutrema salsugineum HOM05D005068 ORTHO05D007561 5.4e-270 934.9 920 58.8
arahy.Tifrunner.gnm1.ann1.X03KN2 Arachis hypogaea HOM05D005068 ORTHO05D007561 2.0e-269 932.9 1047 54.4
ClCG09G001250 Citrullus lanatus HOM05D005068 ORTHO05D007561 1.3e-268 930.2 1013 55.2
BcaC08g46695 Brassica carinata HOM05D005068 ORTHO05D007561 5.0e-268 928.3 895 59.0
unitig_26.g8921 Utricularia gibba HOM05D005068 ORTHO05D007561 1.9e-267 926.4 1030 55.7
C06p46800 Brassica napus HOM05D005068 ORTHO05D007561 1.0e-265 920.6 904 58.6
BolC6t39723H Brassica oleracea HOM05D005068 ORTHO05D007561 3.0e-265 919.1 913 58.2
FAN09G4827 Fragaria x ananassa HOM05D005068 ORTHO05D007561 1.0e-260 904.0 1023 54.3
vmacro15071 Vaccinium macrocarpon HOM05D005068 ORTHO05D007561 9.5e-259 897.5 858 61.1
Aa31LG4G2770 Aethionema arabicum HOM05D005068 ORTHO05D007561 3.7e-255 885.6 934 55.5
Actinidia21819 Actinidia chinensis HOM05D005068 ORTHO05D007561 7.0e-254 881.3 887 59.0
CDE05G0629 Ceratophyllum demersum HOM05D005068 ORTHO05D007561 1.6e-253 880.2 912 56.6
BraA07t31420Z Brassica rapa HOM05D005068 ORTHO05D007561 2.7e-253 879.4 922 55.9
MBI13_g01677_MAGBIO Magnolia biondii HOM05D005068 ORTHO05D007561 1.3e-252 877.1 882 57.1
SGA_v2.0_scaffold71G23904 Striga asiatica HOM05D005068 ORTHO05D007561 6.6e-252 874.8 1001 56.0
HPP92_014041 Vanilla planifolia HOM05D005068 ORTHO05D007561 1.9e-251 873.2 854 57.1
Nn8g38536 Nelumbo nucifera HOM05D005068 ORTHO05D007561 2.3e-249 866.3 1029 52.1
ATR0317G028 Amborella trichopoda HOM05D005068 ORTHO05D007561 8.9e-249 864.4 906 56.1
Nitab4.5_0007072g0030 Nicotiana tabacum HOM05D005068 ORTHO05D007561 4.3e-243 845.5 812 63.1
Zm00001eb008900 Zea mays HOM05D005068 ORTHO05D007561 3.2e-238 829.3 1041 52.5
Os09g0116400 Oryza sativa ssp. japonica HOM05D005068 ORTHO05D007561 2.7e-237 826.2 1030 49.1
SEGI_35987 Sequoiadendron giganteum HOM05D005068 ORTHO05D007561 9.2e-230 801.2 872 53.3
vmacro14086 Vaccinium macrocarpon HOM05D005068 ORTHO05D007561 1.2e-221 774.2 613 67.9
Migut.I01119 Erythranthe guttata HOM05D005068 ORTHO05D007561 1.4e-206 724.2 1017 47.5
TAR383G0209 Trochodendron aralioides HOM05D005068 ORTHO05D007561 1.4e-206 724.2 695 59.7
COL.COLO4_30833 Corchorus olitorius HOM05D005068 ORTHO05D007561 3.2e-206 723.0 578 66.4
SHI38508 Sapria himalayana HOM05D005068 ORTHO05D007561 1.3e-194 684.5 843 48.9
FAN02G4153 Fragaria x ananassa HOM05D005068 ORTHO05D007561 1.9e-190 670.6 609 61.2
Pp3c8_7540 Physcomitrium patens HOM05D005068 ORTHO05D007561 1.9e-190 670.6 969 43.7
AagrBONN_evm.TU.Sc2ySwM_228.3616 Anthoceros agrestis HOM05D005068 ORTHO05D007561 1.2e-189 667.9 934 43.6
Mapoly0001s0039 Marchantia polymorpha HOM05D005068 ORTHO05D007561 2.9e-183 646.7 917 43.6
Dinv37834 Davidia involucrata HOM05D005068 ORTHO05D007561 4.7e-173 612.8 497 70.4
A07p38620 Brassica napus HOM05D005068 ORTHO05D007561 4.1e-169 599.7 564 60.3
Sc12g0010810 Simmondsia chinensis HOM05D005068 ORTHO05D007561 5.3e-169 599.4 727 50.9
CBR_g4353 Chara braunii HOM05D005068 ORTHO05D007561 2.5e-158 563.9 853 41.0
ECA234G3781 Erigeron canadensis HOM05D005068 ORTHO05D007561 5.5e-158 562.8 886 42.2
SMO356G0436 Selaginella moellendorffii HOM05D005068 ORTHO05D007561 2.8e-146 523.9 833 40.3
PGSC0003DMG400009145 Solanum tuberosum HOM05D005068 ORTHO05D007561 5.4e-145 519.6 584 54.1
CDE11G1047 Ceratophyllum demersum HOM05D005068 ORTHO05D007561 1.6e-144 518.1 642 47.7
Dinv37835 Davidia involucrata HOM05D005068 ORTHO05D007561 5.4e-129 466.5 357 68.6
Cre10.g459600 Chlamydomonas reinhardtii HOM05D005068 ORTHO05D007561 5.2e-108 396.7 1016 33.2
CDE11G0362 Ceratophyllum demersum HOM05D005068 ORTHO05D007561 1.3e-95 355.5 357 58.0
Cc00_g06320 Coffea canephora HOM05D005068 ORTHO05D007561 9.9e-91 339.3 216 84.7
TAR383G0400 Trochodendron aralioides HOM05D005068 ORTHO05D007561 8.2e-85 319.7 319 58.6
PRCOL_00007240 Prasinoderma coloniale HOM05D005068 ORTHO05D007561 6.5e-82 310.1 615 37.2
Haze_25369 Corylus avellana HOM05D005068 ORTHO05D007561 8.4e-82 309.7 633 37.1
SHI25215 Sapria himalayana HOM05D005068 ORTHO05D007561 1.0e-71 276.2 418 42.3
Cfa026526 Carpinus fangiana HOM05D005068 ORTHO05D007561 1.7e-69 268.9 734 30.2
Psat7g194920 Pisum sativum HOM05D005068 ORTHO05D030493 8.8e-55 219.9 212 60.4
vmacro14085 Vaccinium macrocarpon HOM05D005068 ORTHO05D007561 1.4e-52 212.6 234 59.4
FAN23G2170 Fragaria x ananassa HOM05D005068 ORTHO05D007561 1.0e-47 196.4 209 54.1
MSTRG.13912 Avicennia marina HOM05D005068 ORTHO05D019833 1.0e-39 169.9 149 65.8
Hund18058 Selenicereus undatus HOM05D005068 ORTHO05D030493 2.7e-35 155.2 172 52.9
Psat7g194960 Pisum sativum HOM05D005068 ORTHO05D030493 1.0e-31 143.3 161 52.8
HanXRQChr04g0122031 Helianthus annuus HOM05D005068 ORTHO05D007561 4.9e-29 134.4 131 59.5
Psat4g066440 Pisum sativum HOM05D005068 ORTHO05D030493 4.1e-28 131.3 121 61.2
Sc16g0005100 Simmondsia chinensis HOM05D005068 ORTHO05D014954 3.9e-18 98.2 57 80.7
Zm00001eb239840 Zea mays HOM05D001561 ORTHO05D001715 1.1e-17 96.7 104 49.0
Lj5C31T11 Lonicera japonica HOM05D005068 ORTHO05D019833 3.3e-17 95.1 229 42.4
COL.COLO4_30832 Corchorus olitorius HOM05D005068 ORTHO05D014954 5.6e-17 94.4 51 86.3
ECA233G2064 Erigeron canadensis HOM05D005068 ORTHO05D007561 2.8e-16 92.0 81 59.3
vmacro15070 Vaccinium macrocarpon HOM05D005068 ORTHO05D019833 1.1e-12 80.1 219 35.2
Sc16g0005210 Simmondsia chinensis HOM05D005068 ORTHO05D019833 3.6e-08 65.1 215 33.0
vmacro14087 Vaccinium macrocarpon HOM05D005068 ORTHO05D019833 2.3e-07 62.4 37 78.4
C04p42190 Brassica napus HOM05D014151 ORTHO05D014954 4.0e-07 61.6 42 66.7
C09p50490 Brassica napus HOM05D014151 ORTHO05D014954 4.0e-07 61.6 42 66.7
C03p21460 Brassica napus HOM05D014151 ORTHO05D014954 1.5e-06 59.7 42 64.3
BolC3t14532H Brassica oleracea HOM05D014151 ORTHO05D014954 1.5e-06 59.7 42 64.3
BcaC09g47952 Brassica carinata HOM05D014151 ORTHO05D014954 3.4e-06 58.5 42 61.9


User provided reference genes

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