Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc04_g00810 Coffea canephora HOM05D004219 ORTHO05D004857 0.0e+00 1571.2 773 100.0
Dinv20389 Davidia involucrata HOM05D004219 ORTHO05D004857 0.0e+00 1271.1 773 80.6
Actinidia21828 Actinidia chinensis HOM05D004219 ORTHO05D004857 0.0e+00 1238.0 773 78.7
CSS0038823 Camellia sinensis var. sinensis HOM05D004219 ORTHO05D004857 0.0e+00 1227.6 773 77.9
CSS0000587 Camellia sinensis var. sinensis HOM05D004219 ORTHO05D004857 0.0e+00 1227.2 773 78.0
Nitab4.5_0000357g0090 Nicotiana tabacum HOM05D004219 ORTHO05D004857 0.0e+00 1220.3 775 76.5
Rhsim08G0243800 Rhododendron simsii HOM05D004219 ORTHO05D004857 0.0e+00 1219.1 803 75.3
CAN.G1721.2 Capsicum annuum HOM05D004219 ORTHO05D004857 0.0e+00 1217.2 773 76.1
Nitab4.5_0004589g0030 Nicotiana tabacum HOM05D004219 ORTHO05D004857 0.0e+00 1217.2 775 76.5
Sopen12g024040 Solanum pennellii HOM05D004219 ORTHO05D004857 0.0e+00 1215.3 774 76.2
PGSC0003DMG400028852 Solanum tuberosum HOM05D004219 ORTHO05D004857 0.0e+00 1215.3 773 76.2
Peaxi162Scf00177g00619 Petunia axillaris HOM05D004219 ORTHO05D004857 0.0e+00 1213.0 775 76.4
Solyc12g049570.3 Solanum lycopersicum HOM05D004219 ORTHO05D004857 0.0e+00 1207.2 774 75.7
vmacro15080 Vaccinium macrocarpon HOM05D004219 ORTHO05D004857 0.0e+00 1203.0 791 75.9
TAR383G0549 Trochodendron aralioides HOM05D004219 ORTHO05D004857 0.0e+00 1186.0 775 75.0
GSVIVG01016680001 Vitis vinifera HOM05D004219 ORTHO05D004857 0.0e+00 1184.9 773 75.4
Lj5A30T66 Lonicera japonica HOM05D004219 ORTHO05D004857 0.0e+00 1180.6 766 77.0
Oeu059024.1 Olea europaea HOM05D004219 ORTHO05D004857 0.0e+00 1176.4 773 74.8
Nn6g35715 Nelumbo nucifera HOM05D004219 ORTHO05D004857 0.0e+00 1171.8 776 74.0
DCAR_016092 Daucus carota HOM05D004219 ORTHO05D004857 0.0e+00 1171.4 771 74.6
CiPaw.01G212300 Carya illinoinensis HOM05D004219 ORTHO05D004857 0.0e+00 1157.9 775 72.9
TAR624G1175 Trochodendron aralioides HOM05D004219 ORTHO05D004857 0.0e+00 1154.4 784 73.3
Cfa003467 Carpinus fangiana HOM05D004219 ORTHO05D004857 0.0e+00 1145.6 773 71.8
MBI13_g01684_MAGBIO Magnolia biondii HOM05D004219 ORTHO05D004857 0.0e+00 1142.5 774 72.2
CiPaw.02G131700 Carya illinoinensis HOM05D004219 ORTHO05D004857 0.0e+00 1141.3 773 71.4
Ciclev10007563m.g Citrus clementina HOM05D004219 ORTHO05D004857 0.0e+00 1137.1 774 72.1
Prupe.3G031800 Prunus persica HOM05D004219 ORTHO05D004857 0.0e+00 1132.9 774 72.0
QL05p001749 Quercus lobata HOM05D004219 ORTHO05D004857 0.0e+00 1132.5 772 71.5
MD17G1153300 Malus domestica HOM05D004219 ORTHO05D004857 0.0e+00 1132.1 773 71.9
QL05p001473 Quercus lobata HOM05D004219 ORTHO05D004857 0.0e+00 1126.7 772 71.2
CANSAT56G2968 Cannabis sativa HOM05D004219 ORTHO05D004857 0.0e+00 1124.4 773 71.0
Migut.I01126 Erythranthe guttata HOM05D004219 ORTHO05D004857 0.0e+00 1124.0 783 71.5
MD09G1173700 Malus domestica HOM05D004219 ORTHO05D004857 0.0e+00 1119.8 774 71.2
Manes.16G089900 Manihot esculenta HOM05D004219 ORTHO05D004857 0.0e+00 1115.1 775 71.9
RcHm_v2.0_Chr2g0147711 Rosa chinensis HOM05D004219 ORTHO05D004857 0.0e+00 1113.6 774 71.7
FvH4_6g35710 Fragaria vesca HOM05D004219 ORTHO05D004857 0.0e+00 1109.0 775 71.2
FAN14G4832 Fragaria x ananassa HOM05D004219 ORTHO05D004857 0.0e+00 1109.0 775 71.2
Duzib168G0770 Durio zibethinus HOM05D004219 ORTHO05D004857 0.0e+00 1107.8 775 71.6
FAN09G1853 Fragaria x ananassa HOM05D004219 ORTHO05D004857 0.0e+00 1105.1 775 71.1
Duzib187G1712 Durio zibethinus HOM05D004219 ORTHO05D004857 0.0e+00 1104.0 775 71.2
Gohir.A07G017500 Gossypium hirsutum HOM05D004219 ORTHO05D004857 0.0e+00 1103.2 775 70.8
Manes.03G045300 Manihot esculenta HOM05D004219 ORTHO05D004857 0.0e+00 1101.3 774 69.9
Gorai.001G018000 Gossypium raimondii HOM05D004219 ORTHO05D004857 0.0e+00 1100.9 775 70.8
HanXRQChr09g0277221 Helianthus annuus HOM05D004219 ORTHO05D004857 0.0e+00 1100.5 761 73.1
QL11p003182 Quercus lobata HOM05D004219 ORTHO05D004857 0.0e+00 1099.7 784 70.4
Potri.006G135500 Populus trichocarpa HOM05D004219 ORTHO05D004857 0.0e+00 1099.3 774 70.7
Aqoxy7G00940 Aquilegia oxysepala HOM05D004219 ORTHO05D004857 0.0e+00 1098.6 781 70.8
Thecc.09G069400 Theobroma cacao HOM05D004219 ORTHO05D004857 0.0e+00 1098.6 775 70.8
TWI63G0110 Tripterygium wilfordii HOM05D004219 ORTHO05D004857 0.0e+00 1097.4 773 70.6
FAN02G2730 Fragaria x ananassa HOM05D004219 ORTHO05D004857 0.0e+00 1096.3 775 70.3
Duzib150G0120 Durio zibethinus HOM05D004219 ORTHO05D004857 0.0e+00 1092.0 780 70.4
Cpa.g.sc82.51 Carica papaya HOM05D004219 ORTHO05D004857 0.0e+00 1089.3 776 70.1
TWI34G1001 Tripterygium wilfordii HOM05D004219 ORTHO05D004857 0.0e+00 1088.6 773 70.1
ECA232G2871 Erigeron canadensis HOM05D004219 ORTHO05D004857 0.0e+00 1085.5 777 71.3
Potri.018G064500 Populus trichocarpa HOM05D004219 ORTHO05D004857 0.0e+00 1085.1 774 70.8
Sabra18G0057200 Salix brachista HOM05D004219 ORTHO05D004857 0.0e+00 1082.4 774 70.4
PSO135G0149 Papaver somniferum HOM05D004219 ORTHO05D004857 0.0e+00 1081.2 780 69.1
GSVIVG01015005001 Vitis vinifera HOM05D004219 ORTHO05D004857 0.0e+00 1081.2 774 70.7
Glyma.07G045100 Glycine max HOM05D004219 ORTHO05D004857 0.0e+00 1080.5 775 68.8
Glyma.16G013100 Glycine max HOM05D004219 ORTHO05D004857 0.0e+00 1080.5 774 69.1
Gorai.010G095800 Gossypium raimondii HOM05D004219 ORTHO05D004857 0.0e+00 1080.5 774 70.5
PSO724G0293 Papaver somniferum HOM05D004219 ORTHO05D004857 5.3e-312 1073.9 783 68.7
Eucgr.C00764 Eucalyptus grandis HOM05D004219 ORTHO05D004857 3.7e-311 1071.2 774 69.4
Gorai.009G038600 Gossypium raimondii HOM05D004219 ORTHO05D004857 6.8e-310 1067.0 774 69.1
Gohir.A06G084100 Gossypium hirsutum HOM05D004219 ORTHO05D004857 7.5e-309 1063.5 776 69.7
Phvul.010G123900 Phaseolus vulgaris HOM05D004219 ORTHO05D004857 9.9e-309 1063.1 774 68.1
Gohir.A05G036600 Gossypium hirsutum HOM05D004219 ORTHO05D004857 6.4e-308 1060.4 775 68.5
Gohir.D05G038100 Gossypium hirsutum HOM05D004219 ORTHO05D004857 1.1e-307 1059.7 774 68.9
Hund05707 Selenicereus undatus HOM05D004219 ORTHO05D004857 2.3e-305 1052.0 767 67.1
Sc15g0000780 Simmondsia chinensis HOM05D004219 ORTHO05D004857 3.6e-303 1044.6 774 66.3
Lj3g0000905 Lotus japonicus HOM05D004219 ORTHO05D004857 4.4e-301 1037.7 774 67.1
Gohir.D06G082300 Gossypium hirsutum HOM05D004219 ORTHO05D004857 7.6e-301 1036.9 774 68.3
VMungo0331G1133 Vigna mungo HOM05D004219 ORTHO05D004857 9.9e-301 1036.6 774 66.4
Haze_16129 Corylus avellana HOM05D004219 ORTHO05D004857 2.9e-300 1035.0 828 63.9
TPR.G18148 Trifolium pratense HOM05D004219 ORTHO05D004857 1.4e-299 1032.7 776 66.4
Psat4g165840 Pisum sativum HOM05D004219 ORTHO05D004857 7.1e-299 1030.4 781 65.8
Ca_23428_v3 Cicer arietinum L. HOM05D004219 ORTHO05D004857 1.2e-298 1029.6 777 66.0
Lalb_Chr04g0253891 Lupinus albus HOM05D004219 ORTHO05D004857 2.7e-298 1028.5 773 65.8
Lalb_Chr17g0343311 Lupinus albus HOM05D004219 ORTHO05D004857 2.7e-298 1028.5 772 65.9
Medtr2g044550 Medicago truncatula HOM05D004219 ORTHO05D004857 4.6e-298 1027.7 782 67.0
Gohir.D07G017300 Gossypium hirsutum HOM05D004219 ORTHO05D004857 1.3e-297 1026.2 775 66.7
AUR62025624 Chenopodium quinoa HOM05D004219 ORTHO05D004857 8.6e-297 1023.5 803 63.0
Glyma.U031325 Glycine max HOM05D004219 ORTHO05D004857 1.1e-296 1023.1 778 66.2
Lalb_Chr08g0232811 Lupinus albus HOM05D004219 ORTHO05D004857 1.1e-296 1023.1 768 66.9
Glyma.09G074300 Glycine max HOM05D004219 ORTHO05D004857 4.3e-296 1021.1 779 66.2
Lj6g0016067 Lotus japonicus HOM05D004219 ORTHO05D004857 7.3e-296 1020.4 778 67.1
Medtr8g022980 Medicago truncatula HOM05D004219 ORTHO05D004857 1.2e-295 1019.6 774 66.4
CsaV3_3G030980 Cucumis sativus L. HOM05D004219 ORTHO05D004857 3.6e-295 1018.1 776 65.2
ATR0099G075 Amborella trichopoda HOM05D004219 ORTHO05D004857 1.8e-294 1015.8 798 65.2
ClCG09G001310 Citrullus lanatus HOM05D004219 ORTHO05D004857 3.1e-294 1015.0 774 65.0
Phvul.009G223200 Phaseolus vulgaris HOM05D004219 ORTHO05D004857 4.0e-294 1014.6 779 66.1
Lalb_Chr23g0276141 Lupinus albus HOM05D004219 ORTHO05D004857 2.0e-293 1012.3 778 65.8
VMungo1309G2772 Vigna mungo HOM05D004219 ORTHO05D004857 2.0e-293 1012.3 779 66.2
AL5G21340 Arabidopsis lyrata HOM05D004219 ORTHO05D004857 1.7e-292 1009.2 774 65.6
Carub.0005s0906 Capsella rubella HOM05D004219 ORTHO05D004857 1.7e-292 1009.2 773 65.6
AT3G43240 Arabidopsis thaliana HOM05D004219 ORTHO05D004857 2.9e-292 1008.4 774 65.2
Sed0001277 Sechium edule HOM05D004219 ORTHO05D004857 2.9e-292 1008.4 774 63.2
EL10Ac7g16483 Beta vulgaris HOM05D004219 ORTHO05D004857 4.9e-292 1007.7 768 65.5
MELO3C022696.2 Cucumis melo HOM05D004219 ORTHO05D004857 4.9e-292 1007.7 778 64.5
Thhalv10002415m.g Eutrema salsugineum HOM05D004219 ORTHO05D004857 1.1e-291 1006.5 773 64.8
Sp5g18450 Schrenkiella parvula HOM05D004219 ORTHO05D004857 5.4e-291 1004.2 773 65.1
CARHR153440 Cardamine hirsuta HOM05D004219 ORTHO05D004857 3.5e-290 1001.5 773 65.1
CsaV3_7G034010 Cucumis sativus L. HOM05D004219 ORTHO05D004857 3.5e-290 1001.5 774 64.3
TPR.G26875 Trifolium pratense HOM05D004219 ORTHO05D004857 1.0e-289 1000.0 770 66.0
PGR142G3683 Punica granatum HOM05D004219 ORTHO05D004857 1.7e-289 999.2 775 64.9
THA.LOC104799604 Tarenaya hassleriana HOM05D004219 ORTHO05D004857 4.3e-288 994.6 775 65.4
TAR626G0374 Trochodendron aralioides HOM05D004219 ORTHO05D004857 5.6e-288 994.2 759 66.9
BcaC01g02109 Brassica carinata HOM05D004219 ORTHO05D004857 3.1e-286 988.4 775 64.4
Cfa002934 Carpinus fangiana HOM05D004219 ORTHO05D004857 3.1e-286 988.4 744 67.6
HPP92_019289 Vanilla planifolia HOM05D004219 ORTHO05D004857 4.0e-286 988.0 777 63.6
Aqoxy7G04168 Aquilegia oxysepala HOM05D004219 ORTHO05D004857 1.2e-285 986.5 766 64.9
BcaB01g01229 Brassica carinata HOM05D004219 ORTHO05D004857 2.0e-285 985.7 777 64.5
A06p22640 Brassica napus HOM05D004219 ORTHO05D004857 4.5e-285 984.6 776 64.7
Sed0013718 Sechium edule HOM05D004219 ORTHO05D004857 2.2e-284 982.2 767 64.0
Hma1.2p1_0229F.1_g097030 Hydrangea macrophylla HOM05D004219 ORTHO05D004857 3.8e-284 981.5 721 70.0
CDE04G3533 Ceratophyllum demersum HOM05D004219 ORTHO05D004857 6.4e-284 980.7 774 64.3
SGA_v2.0_scaffold71G23915 Striga asiatica HOM05D004219 ORTHO05D004857 1.4e-283 979.5 774 64.1
Sed0013084 Sechium edule HOM05D004219 ORTHO05D004857 3.2e-283 978.4 775 62.7
Lsat_1_v5_gn_4_92081 Lactuca sativa HOM05D004219 ORTHO05D004857 4.2e-283 978.0 734 69.9
BolC3t19092H Brassica oleracea HOM05D004219 ORTHO05D004857 3.0e-281 971.8 779 63.8
ClCG07G014320 Citrullus lanatus HOM05D004219 ORTHO05D004857 1.3e-279 966.5 754 63.8
unitig_26.g8917 Utricularia gibba HOM05D004219 ORTHO05D004857 1.9e-275 952.6 784 62.6
Ah.08g217310 Amaranthus hybridus HOM05D004219 ORTHO05D004857 2.4e-275 952.2 771 61.9
Zm00001eb313820 Zea mays HOM05D004219 ORTHO05D004857 6.7e-273 944.1 780 61.5
Aa31LG4G12950 Aethionema arabicum HOM05D004219 ORTHO05D004857 8.7e-273 943.7 790 61.6
COL.COLO4_21198 Corchorus olitorius HOM05D004219 ORTHO05D004857 1.4e-270 936.4 775 62.7
Zm00001eb099960 Zea mays HOM05D004219 ORTHO05D004857 4.2e-267 924.9 780 60.6
Ca_02284_v3 Cicer arietinum L. HOM05D004219 ORTHO05D004857 1.6e-266 922.9 788 62.2
Haze_26074 Corylus avellana HOM05D004219 ORTHO05D004857 2.7e-266 922.2 857 58.5
MELO3C024313.2 Cucumis melo HOM05D004219 ORTHO05D004857 1.5e-264 916.4 761 61.2
Os08g0451400 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 5.3e-262 907.9 780 59.0
PGR044G2279 Punica granatum HOM05D004219 ORTHO05D004857 1.1e-254 883.6 780 58.5
arahy.Tifrunner.gnm1.ann1.BBC6WZ Arachis hypogaea HOM05D004219 ORTHO05D004857 1.0e-249 867.1 781 58.9
arahy.Tifrunner.gnm1.ann1.82J223 Arachis hypogaea HOM05D004219 ORTHO05D004857 1.8e-249 866.3 781 58.8
Eucgr.I02158 Eucalyptus grandis HOM05D004219 ORTHO05D004857 2.2e-244 849.4 756 59.8
Sabra06G0106200 Salix brachista HOM05D004219 ORTHO05D004857 2.2e-236 822.8 706 62.3
AUR62001416 Chenopodium quinoa HOM05D004219 ORTHO05D004857 1.6e-226 790.0 736 55.6
Psat1g137920 Pisum sativum HOM05D004219 ORTHO05D004857 1.0e-225 787.3 688 60.8
Actinidia24435 Actinidia chinensis HOM05D004219 ORTHO05D004857 1.5e-203 713.8 773 50.8
Mapoly0094s0004 Marchantia polymorpha HOM05D004219 ORTHO05D004857 1.4e-190 670.6 774 46.6
Zm00001eb040700 Zea mays HOM05D004219 ORTHO05D004857 1.4e-182 644.0 768 45.6
Pp3c15_1350 Physcomitrium patens HOM05D004219 ORTHO05D004857 9.9e-176 621.3 785 43.8
SMO133G0025 Selaginella moellendorffii HOM05D004219 ORTHO05D004857 5.4e-174 615.5 789 44.1
Pp3c6_26590 Physcomitrium patens HOM05D004219 ORTHO05D004857 2.1e-170 603.6 782 44.4
BraA06t25350Z Brassica rapa HOM05D004219 ORTHO05D004857 1.8e-169 600.5 445 67.0
Atru.chr7.1780 Acer truncatum HOM05D004219 ORTHO05D004857 4.9e-167 592.4 418 70.1
arahy.Tifrunner.gnm1.ann1.B45F8N Arachis hypogaea HOM05D004219 ORTHO05D004857 4.8e-162 575.9 388 71.1
SEGI_01121 Sequoiadendron giganteum HOM05D004219 ORTHO05D004857 1.1e-161 574.7 799 41.6
arahy.Tifrunner.gnm1.ann1.W70I1I Arachis hypogaea HOM05D004219 ORTHO05D004857 1.8e-161 573.9 388 70.9
unitig_749.g14037 Utricularia gibba HOM05D004219 ORTHO05D004857 1.2e-157 561.2 410 68.0
Atru.chr7.1779 Acer truncatum HOM05D004219 ORTHO05D004857 2.5e-139 500.4 272 86.4
AagrBONN_evm.TU.Sc2ySwM_344.4361 Anthoceros agrestis HOM05D004219 ORTHO05D004857 3.2e-134 483.4 588 45.1
CDE06G0638 Ceratophyllum demersum HOM05D004219 ORTHO05D004857 5.9e-128 462.6 467 54.0
Os08g0451700 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 8.2e-122 442.2 460 49.6
CDE06G2764 Ceratophyllum demersum HOM05D004219 ORTHO05D004857 2.1e-117 427.6 254 79.5
CBR_g66811 Chara braunii HOM05D004219 ORTHO05D004857 2.2e-98 364.4 754 33.8
Os09g0434100 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 3.9e-79 300.4 277 57.0
Cre10.g429880 Chlamydomonas reinhardtii HOM05D004219 ORTHO05D004857 2.3e-71 274.6 768 29.4
unitig_749.g14036 Utricularia gibba HOM05D004219 ORTHO05D004857 5.8e-67 260.0 288 50.3
Medtr8g038730 Medicago truncatula HOM05D004219 ORTHO05D004857 1.4e-57 228.8 187 61.5
Nn5g27342 Nelumbo nucifera HOM05D004219 ORTHO05D004857 1.2e-51 209.1 242 50.0
TAR383G0322 Trochodendron aralioides HOM05D004219 ORTHO05D004857 3.4e-43 181.0 149 63.1
Os09g0434000 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 3.7e-37 161.0 82 82.9
FAN05G1825 Fragaria x ananassa HOM05D004219 ORTHO05D004857 8.2e-29 133.3 65 84.6
Os08g0361000 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 5.9e-27 127.1 172 40.7
Os08g0451500 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 1.2e-24 119.4 142 41.5
Oeu028234.1 Olea europaea HOM05D004219 ORTHO05D004857 9.4e-17 93.2 73 63.0
MCO07G528 Micromonas commoda HOM05D004219 ORTHO05D004857 1.8e-12 79.0 103 41.7
AUR62025956 Chenopodium quinoa HOM05D000121 ORTHO05D024978 9.1e-12 76.6 66 59.1
BolSC21t60256H Brassica oleracea HOM05D020425 ORTHO05D021983 2.9e-10 71.6 46 71.7
C03p67880 Brassica napus HOM05D020425 ORTHO05D021983 1.6e-08 65.9 39 71.8


User provided reference genes

Program Settings