Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc04_g00790 Coffea canephora HOM05D008314 ORTHO05D010369 1.4e-47 192.6 97 100.0
FAN05G1710 Fragaria x ananassa HOM05D008314 ORTHO05D010369 9.0e-18 93.6 90 53.3
Thecc.03G325500 Theobroma cacao HOM05D008314 ORTHO05D010369 2.0e-17 92.4 84 54.8
Dinv37824 Davidia involucrata HOM05D008314 ORTHO05D010369 3.4e-17 91.7 89 56.2
FvH4_6g35740 Fragaria vesca HOM05D008314 ORTHO05D010369 4.5e-17 91.3 90 52.2
Thecc.06G129300 Theobroma cacao HOM05D008314 ORTHO05D010369 5.8e-17 90.9 82 54.9
QL05p001376 Quercus lobata HOM05D008314 ORTHO05D010369 7.6e-17 90.5 85 50.6
FAN09G4263 Fragaria x ananassa HOM05D008314 ORTHO05D010369 1.0e-16 90.1 90 51.1
RcHm_v2.0_Chr2g0147741 Rosa chinensis HOM05D008314 ORTHO05D010369 1.0e-16 90.1 88 52.3
Duzib160G0115 Durio zibethinus HOM05D008314 ORTHO05D010369 1.7e-16 89.4 87 50.6
Rhsim12G0213100 Rhododendron simsii HOM05D008314 ORTHO05D010369 2.2e-16 89.0 82 58.5
Duzib235G1505 Durio zibethinus HOM05D008314 ORTHO05D010369 2.9e-16 88.6 79 55.7
TWI14G0587 Tripterygium wilfordii HOM05D008314 ORTHO05D010369 3.8e-16 88.2 83 50.6
Cpa.g.sc25.184 Carica papaya HOM05D008314 ORTHO05D010369 1.9e-15 85.9 83 54.2
Manes.11G013300 Manihot esculenta HOM05D008314 ORTHO05D010369 1.9e-15 85.9 91 47.3
FAN02G2954 Fragaria x ananassa HOM05D008314 ORTHO05D010369 4.2e-15 84.7 74 52.7
TAR070G0001 Trochodendron aralioides HOM05D008314 ORTHO05D010369 2.1e-14 82.4 78 51.3
Atru.chr1.4110 Acer truncatum HOM05D008314 ORTHO05D010369 2.7e-14 82.0 87 49.4
Oeu008398.2 Olea europaea HOM05D008314 ORTHO05D010369 2.7e-14 82.0 89 48.3
Potri.003G072000 Populus trichocarpa HOM05D008314 ORTHO05D010369 2.7e-14 82.0 89 48.3
Duzib160G0571 Durio zibethinus HOM05D008314 ORTHO05D010369 3.5e-14 81.6 82 51.2
Rhsim08G0244000 Rhododendron simsii HOM05D008314 ORTHO05D010369 3.5e-14 81.6 95 50.5
CSS0041009 Camellia sinensis var. sinensis HOM05D008314 ORTHO05D010369 6.0e-14 80.9 85 49.4
PSO135G0082 Papaver somniferum HOM05D008314 ORTHO05D010369 1.0e-13 80.1 82 51.2
SalBow6G0833 Salvia bowleyana HOM05D008314 ORTHO05D010369 1.0e-13 80.1 82 53.7
CiPaw.01G212000 Carya illinoinensis HOM05D008314 ORTHO05D010369 2.3e-13 79.0 87 47.1
Oeu059021.1 Olea europaea HOM05D008314 ORTHO05D010369 3.0e-13 78.6 89 47.2
Actinidia24433 Actinidia chinensis HOM05D008314 ORTHO05D010369 6.7e-13 77.4 96 45.8
Ciclev10027008m.g Citrus clementina HOM05D008314 ORTHO05D010369 6.7e-13 77.4 85 45.9
MELO3C024311.2 Cucumis melo HOM05D008314 ORTHO05D010369 6.7e-13 77.4 89 51.7
Gohir.A06G143350 Gossypium hirsutum HOM05D008314 ORTHO05D010369 6.7e-13 77.4 82 45.1
Gorai.010G173500 Gossypium raimondii HOM05D008314 ORTHO05D010369 8.7e-13 77.0 85 44.7
Gohir.D06G149000 Gossypium hirsutum HOM05D008314 ORTHO05D010369 1.1e-12 76.6 79 45.6
PSO724G1385 Papaver somniferum HOM05D008314 ORTHO05D010369 1.1e-12 76.6 100 46.0
ClCG09G001340 Citrullus lanatus HOM05D008314 ORTHO05D010369 1.5e-12 76.3 91 51.6
COL.COLO4_30857 Corchorus olitorius HOM05D008314 ORTHO05D010369 1.5e-12 76.3 69 53.6
Ciclev10026853m.g Citrus clementina HOM05D008314 ORTHO05D010369 2.5e-12 75.5 90 44.4
CsaV3_7G033990 Cucumis sativus L. HOM05D008314 ORTHO05D010369 3.3e-12 75.1 77 48.1
Glyma.16G013200 Glycine max HOM05D008314 ORTHO05D010369 4.3e-12 74.7 80 48.8
Phvul.010G123800 Phaseolus vulgaris HOM05D008314 ORTHO05D010369 4.3e-12 74.7 85 45.9
Sed0005090 Sechium edule HOM05D008314 ORTHO05D010369 9.7e-12 73.6 85 47.1
MBI13_g01687_MAGBIO Magnolia biondii HOM05D008314 ORTHO05D010369 4.8e-11 71.2 78 43.6
Nn6g35721 Nelumbo nucifera HOM05D008314 ORTHO05D010369 4.8e-11 71.2 92 44.6
Lalb_Chr17g0343301 Lupinus albus HOM05D008314 ORTHO05D010369 6.3e-11 70.9 79 45.6
Prupe.3G031600 Prunus persica HOM05D008314 ORTHO05D010369 6.3e-11 70.9 81 50.6
arahy.Tifrunner.gnm1.ann1.K03VIU Arachis hypogaea HOM05D008314 ORTHO05D010369 1.1e-10 70.1 79 46.8
Medtr8g022990 Medicago truncatula HOM05D008314 ORTHO05D010369 1.1e-10 70.1 93 40.9
ATR0099G003 Amborella trichopoda HOM05D008314 ORTHO05D010369 1.4e-10 69.7 79 45.6
arahy.Tifrunner.gnm1.ann1.0KI29H Arachis hypogaea HOM05D008314 ORTHO05D010369 1.4e-10 69.7 79 46.8
AUR62025623 Chenopodium quinoa HOM05D008314 ORTHO05D010369 1.4e-10 69.7 93 40.9
Psat4g165800 Pisum sativum HOM05D008314 ORTHO05D010369 1.8e-10 69.3 48 66.7
MD09G1173500 Malus domestica HOM05D008314 ORTHO05D010369 3.1e-10 68.6 86 44.2
AUR62001414 Chenopodium quinoa HOM05D008314 ORTHO05D010369 9.0e-10 67.0 91 38.5
CiPaw.01G212100 Carya illinoinensis HOM05D008314 ORTHO05D010369 1.5e-09 66.2 41 63.4
Oeu059020.1 Olea europaea HOM05D008314 ORTHO05D010369 2.6e-09 65.5 44 61.4
Os02g0564600 Oryza sativa ssp. japonica HOM05D008314 ORTHO05D010369 3.8e-08 61.6 35 65.7
SEGI_28829 Sequoiadendron giganteum HOM05D008314 ORTHO05D010369 1.1e-07 60.1 62 43.5
Os03g0400700 Oryza sativa ssp. japonica HOM05D008314 ORTHO05D010369 4.2e-07 58.2 80 42.5
SEGI_18497 Sequoiadendron giganteum HOM05D042000 ORTHO05D010369 3.6e-06 55.1 38 57.9
Zm00001eb019440 Zea mays HOM05D008314 ORTHO05D010369 4.6e-06 54.7 34 58.8


User provided reference genes

Program Settings