Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc04_g00650 Coffea canephora HOM05D008031 ORTHO05D010063 2.5e-92 342.0 166 100.0
Hma1.2p1_0090F.1_g045750 Hydrangea macrophylla HOM05D008031 ORTHO05D010063 9.0e-34 147.5 167 49.7
Hma1.2p1_2628F.1_g325675 Hydrangea macrophylla HOM05D008031 ORTHO05D010063 9.0e-34 147.5 167 49.7
PGSC0003DMG400009151 Solanum tuberosum HOM05D008031 ORTHO05D010063 4.5e-33 145.2 172 50.6
Actinidia21841 Actinidia chinensis HOM05D008031 ORTHO05D010063 1.3e-32 143.7 171 49.1
Peaxi162Scf00038g02327 Petunia axillaris HOM05D008031 ORTHO05D010063 1.7e-32 143.3 171 49.1
Sopen03g041440 Solanum pennellii HOM05D008031 ORTHO05D010063 1.4e-31 140.2 172 48.3
Oeu019510.1 Olea europaea HOM05D008031 ORTHO05D010063 1.9e-31 139.8 167 46.7
Solyc03g123670.3 Solanum lycopersicum HOM05D008031 ORTHO05D010063 9.3e-31 137.5 172 48.3
Manes.04G151400 Manihot esculenta HOM05D008031 ORTHO05D010063 4.6e-30 135.2 168 47.0
Oeu053417.1 Olea europaea HOM05D008031 ORTHO05D010063 6.0e-30 134.8 166 45.8
CSS0025062 Camellia sinensis var. sinensis HOM05D001728 ORTHO05D004321 2.3e-29 132.9 170 49.4
TWI14G1127 Tripterygium wilfordii HOM05D008031 ORTHO05D010063 3.0e-29 132.5 167 46.1
Nitab4.5_0006338g0010 Nicotiana tabacum HOM05D008031 ORTHO05D010063 8.7e-29 131.0 171 45.6
Thecc.06G130800 Theobroma cacao HOM05D008031 ORTHO05D010063 1.1e-28 130.6 167 44.9
TAR626G1534 Trochodendron aralioides HOM05D008031 ORTHO05D010063 3.3e-28 129.0 167 47.9
MBI19_g32875_MAGBIO Magnolia biondii HOM05D008031 ORTHO05D010063 9.6e-28 127.5 176 42.6
Atru.chr1.4165 Acer truncatum HOM05D008031 ORTHO05D010063 1.3e-27 127.1 169 46.2
SGA_v2.0_scaffold71G23934 Striga asiatica HOM05D008031 ORTHO05D010063 2.1e-27 126.3 169 43.2
Atru.chr1.4161 Acer truncatum HOM05D008031 ORTHO05D010063 2.8e-27 125.9 169 45.6
Actinidia24421 Actinidia chinensis HOM05D001728 ORTHO05D004321 4.8e-27 125.2 171 46.2
QL05p000882 Quercus lobata HOM05D008031 ORTHO05D010063 6.2e-27 124.8 167 44.9
QL05p001111 Quercus lobata HOM05D008031 ORTHO05D010063 6.2e-27 124.8 167 44.9
GSVIVG01016662001 Vitis vinifera HOM05D008031 ORTHO05D010063 6.2e-27 124.8 167 46.1
CiPaw.01G211000 Carya illinoinensis HOM05D008031 ORTHO05D010063 2.4e-26 122.9 170 45.3
Potri.001G162100 Populus trichocarpa HOM05D008031 ORTHO05D010063 6.9e-26 121.3 167 41.9
CANSAT56G3277 Cannabis sativa HOM05D008031 ORTHO05D010063 1.2e-25 120.6 169 40.8
Nitab4.5_0006966g0010 Nicotiana tabacum HOM05D008031 ORTHO05D010063 1.2e-25 120.6 173 43.9
Rhsim08G0245200 Rhododendron simsii HOM05D008031 ORTHO05D010063 2.6e-25 119.4 169 45.6
Ciclev10027015m.g Citrus clementina HOM05D008031 ORTHO05D010063 3.8e-24 115.5 203 38.4
CsaV3_3G031060 Cucumis sativus L. HOM05D008031 ORTHO05D010063 2.5e-23 112.8 149 45.6
CiPaw.02G130600 Carya illinoinensis HOM05D008031 ORTHO05D010063 3.2e-23 112.5 173 43.9
Eucgr.J02592 Eucalyptus grandis HOM05D008031 ORTHO05D010063 4.2e-23 112.1 167 44.3
COL.COLO4_30875 Corchorus olitorius HOM05D008031 ORTHO05D010063 1.6e-22 110.2 167 40.7
MELO3C022708.2 Cucumis melo HOM05D008031 ORTHO05D010063 1.6e-22 110.2 149 44.3
Lj3g0013752 Lotus japonicus HOM05D008031 ORTHO05D010063 1.6e-22 110.2 169 44.4
Duzib235G0155 Durio zibethinus HOM05D008031 ORTHO05D010063 2.1e-22 109.8 140 45.7
Haze_16140 Corylus avellana HOM05D001728 ORTHO05D004321 4.6e-22 108.6 167 40.1
Prupe.3G030600 Prunus persica HOM05D008031 ORTHO05D010063 4.6e-22 108.6 167 40.7
Potri.003G073200 Populus trichocarpa HOM05D008031 ORTHO05D010063 6.1e-22 108.2 167 38.9
PGR102G3014 Punica granatum HOM05D008031 ORTHO05D010063 1.3e-21 107.1 174 43.1
ClCG07G014260 Citrullus lanatus HOM05D008031 ORTHO05D010063 2.5e-20 102.8 167 40.7
RcHm_v2.0_Chr2g0148091 Rosa chinensis HOM05D008031 ORTHO05D010063 9.7e-20 100.9 165 38.8
MD17G1154700 Malus domestica HOM05D008031 ORTHO05D010063 2.2e-19 99.8 148 43.2
Gohir.A10G048037 Gossypium hirsutum HOM05D001728 ORTHO05D004321 6.3e-19 98.2 167 37.7
Gohir.D10G051032 Gossypium hirsutum HOM05D001728 ORTHO05D004321 6.3e-19 98.2 167 37.7
Gorai.011G054900 Gossypium raimondii HOM05D001728 ORTHO05D004321 6.3e-19 98.2 167 37.7
FvH4_6g35970 Fragaria vesca HOM05D008031 ORTHO05D010063 8.2e-19 97.8 165 36.4
FAN09G4453 Fragaria x ananassa HOM05D008031 ORTHO05D010063 8.2e-19 97.8 165 36.4
FAN14G4753 Fragaria x ananassa HOM05D008031 ORTHO05D010063 8.2e-19 97.8 165 36.4
FAN02G3240 Fragaria x ananassa HOM05D008031 ORTHO05D010063 3.1e-18 95.9 165 36.4
Sed0024761 Sechium edule HOM05D008031 ORTHO05D010063 3.1e-18 95.9 168 39.9
Aqoxy7G04192 Aquilegia oxysepala HOM05D008031 ORTHO05D010063 6.9e-18 94.7 175 40.0
Glyma.07G046300 Glycine max HOM05D008031 ORTHO05D010063 9.0e-18 94.4 170 40.6
Migut.I01137 Erythranthe guttata HOM05D008031 ORTHO05D010063 1.2e-17 94.0 160 40.6
MD09G1172200 Malus domestica HOM05D008031 ORTHO05D010063 7.7e-17 91.3 148 39.2
Cfa003457 Carpinus fangiana HOM05D008031 ORTHO05D010063 1.0e-16 90.9 176 36.4
FAN05G2192 Fragaria x ananassa HOM05D008031 ORTHO05D010063 1.0e-16 90.9 165 34.5
Lalb_Chr10g0101091 Lupinus albus HOM05D008031 ORTHO05D010063 1.7e-16 90.1 170 37.6
Medtr8g023390 Medicago truncatula HOM05D008031 ORTHO05D010063 1.7e-16 90.1 158 40.5
Cpa.g.sc25.199 Carica papaya HOM05D008031 ORTHO05D010063 3.8e-16 89.0 169 37.9
DCAR_022641 Daucus carota HOM05D008031 ORTHO05D010063 3.8e-16 89.0 177 39.0
TPR.G29474 Trifolium pratense HOM05D008031 ORTHO05D010063 1.6e-14 83.6 166 38.6
VMungo0331G1222 Vigna mungo HOM05D008031 ORTHO05D010063 1.6e-14 83.6 177 37.3
Phvul.010G122700 Phaseolus vulgaris HOM05D008031 ORTHO05D010063 2.1e-14 83.2 172 38.4
Hund18631 Selenicereus undatus HOM05D008031 ORTHO05D010063 3.6e-14 82.4 171 39.2
Dinv20378 Davidia involucrata HOM05D001728 ORTHO05D004321 1.4e-13 80.5 134 36.6
Oeu015468.1 Olea europaea HOM05D008031 ORTHO05D010063 1.8e-13 80.1 167 36.5
Eucgr.I02164 Eucalyptus grandis HOM05D008031 ORTHO05D010063 1.3e-11 73.9 158 37.3
Glyma.16G014500 Glycine max HOM05D008031 ORTHO05D010063 1.3e-11 73.9 169 34.9
MSTRG.9544 Avicennia marina HOM05D008031 ORTHO05D010063 1.7e-11 73.6 142 38.0
SalBow6G0345 Salvia bowleyana HOM05D008031 ORTHO05D010063 3.7e-11 72.4 161 34.2
Lsat_1_v5_gn_4_90600 Lactuca sativa HOM05D008031 ORTHO05D010063 4.8e-11 72.0 156 34.0
Ah.08g217400 Amaranthus hybridus HOM05D008031 ORTHO05D010063 6.3e-11 71.6 177 34.5
arahy.Tifrunner.gnm1.ann1.8JA41T Arachis hypogaea HOM05D008031 ORTHO05D010063 3.8e-08 62.4 161 32.9
Rhsim08G0245400 Rhododendron simsii HOM05D002316 ORTHO05D002280 8.5e-08 61.2 68 50.0
arahy.Tifrunner.gnm1.ann1.CKB8X1 Arachis hypogaea HOM05D008031 ORTHO05D010063 1.4e-07 60.5 165 32.1
arahy.Tifrunner.gnm1.ann1.PVL51W Arachis hypogaea HOM05D008031 ORTHO05D010063 5.5e-07 58.5 161 34.8
CAN.G635.24 Capsicum annuum HOM05D008031 ORTHO05D010063 6.1e-06 55.1 61 49.2


User provided reference genes

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