Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc04_g00530 Coffea canephora HOM05D006671 ORTHO05D008637 0.0e+00 1079.3 537 100.0
vmacro18708 Vaccinium macrocarpon HOM05D006671 ORTHO05D008637 4.9e-198 694.9 538 65.2
CSS0038482 Camellia sinensis var. sinensis HOM05D006671 ORTHO05D008637 2.7e-196 689.1 535 63.9
Rhsim08G0246200 Rhododendron simsii HOM05D006671 ORTHO05D008637 1.1e-194 683.7 549 63.0
SalBow7G2314 Salvia bowleyana HOM05D006671 ORTHO05D008637 1.2e-191 673.7 532 63.0
Sopen12g024210 Solanum pennellii HOM05D006671 ORTHO05D008637 6.4e-190 667.9 535 62.2
Solyc12g055740.2 Solanum lycopersicum HOM05D006671 ORTHO05D008637 3.0e-187 659.1 532 61.7
PGSC0003DMG402028844 Solanum tuberosum HOM05D006671 ORTHO05D008637 1.5e-186 656.8 532 62.0
Thecc.06G048900 Theobroma cacao HOM05D006671 ORTHO05D008637 2.1e-185 652.9 543 59.9
MSTRG.9549 Avicennia marina HOM05D006671 ORTHO05D008637 2.8e-185 652.5 537 62.0
CAN.G390.42 Capsicum annuum HOM05D006671 ORTHO05D008637 3.6e-185 652.1 535 61.9
Migut.D00903 Erythranthe guttata HOM05D006671 ORTHO05D008637 1.5e-183 646.7 534 61.6
Duzib160G0342 Durio zibethinus HOM05D006671 ORTHO05D008637 3.4e-183 645.6 541 59.3
COL.COLO4_26801 Corchorus olitorius HOM05D006671 ORTHO05D008637 3.8e-182 642.1 541 59.9
Phvul.010G121800 Phaseolus vulgaris HOM05D006671 ORTHO05D008637 7.9e-180 634.4 542 59.4
PGSC0003DMG401028844 Solanum tuberosum HOM05D006671 ORTHO05D008637 8.7e-179 630.9 532 60.2
Sc12g0010960 Simmondsia chinensis HOM05D006671 ORTHO05D008637 1.3e-177 627.1 533 58.9
Psat4g165440 Pisum sativum HOM05D006671 ORTHO05D008637 2.1e-177 626.3 540 59.1
TAR623G0926 Trochodendron aralioides HOM05D006671 ORTHO05D008637 2.8e-177 625.9 538 58.2
CiPaw.03G010100 Carya illinoinensis HOM05D006671 ORTHO05D008637 4.8e-177 625.2 545 58.2
TPR.G26443 Trifolium pratense HOM05D006671 ORTHO05D008637 4.8e-177 625.2 540 59.1
SGA_v2.0_scaffold4G02101 Striga asiatica HOM05D006671 ORTHO05D008637 6.2e-177 624.8 535 60.2
Atru.chr1.4182 Acer truncatum HOM05D006671 ORTHO05D008637 8.1e-177 624.4 539 58.6
Glyma.07G047100 Glycine max HOM05D006671 ORTHO05D008637 8.1e-177 624.4 546 58.8
Eucgr.I02172 Eucalyptus grandis HOM05D006671 ORTHO05D008637 1.1e-176 624.0 536 56.9
ECA234G0268 Erigeron canadensis HOM05D006671 ORTHO05D008637 6.9e-176 621.3 536 57.8
Gohir.D13G119900 Gossypium hirsutum HOM05D006671 ORTHO05D008637 7.6e-175 617.8 544 57.7
Glyma.16G015100 Glycine max HOM05D006671 ORTHO05D008637 9.9e-175 617.5 547 59.0
Nn8g41287 Nelumbo nucifera HOM05D006671 ORTHO05D008637 1.1e-173 614.0 538 56.3
Gorai.013G134300 Gossypium raimondii HOM05D006671 ORTHO05D008637 1.9e-173 613.2 548 57.5
Ciclev10025368m.g Citrus clementina HOM05D006671 ORTHO05D008637 7.1e-173 611.3 539 56.6
Manes.11G010600 Manihot esculenta HOM05D006671 ORTHO05D008637 7.1e-173 611.3 543 56.5
Prupe.3G029600 Prunus persica HOM05D006671 ORTHO05D008637 9.3e-173 610.9 536 57.6
Medtr8g023620 Medicago truncatula HOM05D006671 ORTHO05D008637 1.6e-172 610.1 542 57.6
Lj3g0013980 Lotus japonicus HOM05D006671 ORTHO05D008637 2.7e-172 609.4 549 57.7
PGR119G0898 Punica granatum HOM05D006671 ORTHO05D008637 2.7e-172 609.4 540 56.5
Actinidia24409 Actinidia chinensis HOM05D006671 ORTHO05D008637 7.9e-172 607.8 492 63.0
Lalb_Chr10g0101031 Lupinus albus HOM05D006671 ORTHO05D008637 8.7e-171 604.4 543 58.4
MD09G1171100 Malus domestica HOM05D006671 ORTHO05D008637 1.1e-170 604.0 540 57.0
DCAR_007665 Daucus carota HOM05D006671 ORTHO05D008637 7.4e-170 601.3 558 55.9
Potri.001G161100 Populus trichocarpa HOM05D006671 ORTHO05D008637 7.4e-170 601.3 543 56.2
Lj5C27T5 Lonicera japonica HOM05D006671 ORTHO05D008637 9.6e-170 600.9 488 62.9
CANSAT56G3116 Cannabis sativa HOM05D006671 ORTHO05D008637 2.4e-168 596.3 540 56.3
RcHm_v2.0_Chr2g0148251 Rosa chinensis HOM05D006671 ORTHO05D008637 2.0e-167 593.2 531 58.2
PSO017G0187 Papaver somniferum HOM05D006671 ORTHO05D008637 1.1e-165 587.4 537 56.6
HanXRQChr10g0311581 Helianthus annuus HOM05D006671 ORTHO05D008637 3.2e-165 585.9 541 56.6
Aa31LG10G1550 Aethionema arabicum HOM05D006671 ORTHO05D008637 9.3e-165 584.3 538 54.6
Haze_14039 Corylus avellana HOM05D006671 ORTHO05D008637 3.0e-163 579.3 635 49.3
TWI59G0357 Tripterygium wilfordii HOM05D006671 ORTHO05D008637 1.1e-162 577.4 545 55.6
EL10Ac7g18235 Beta vulgaris HOM05D006671 ORTHO05D008637 3.3e-162 575.9 539 54.5
AT1G53710 Arabidopsis thaliana HOM05D006671 ORTHO05D008637 4.3e-162 575.5 537 53.1
Thhalv10011378m.g Eutrema salsugineum HOM05D006671 ORTHO05D008637 5.7e-162 575.1 540 53.0
Aqoxy2G04033 Aquilegia oxysepala HOM05D006671 ORTHO05D008637 1.6e-161 573.5 547 54.1
BcaB04g17063 Brassica carinata HOM05D006671 ORTHO05D008637 2.8e-161 572.8 537 52.9
FvH4_6g36250 Fragaria vesca HOM05D006671 ORTHO05D008637 2.8e-161 572.8 534 55.4
Sp1g40250 Schrenkiella parvula HOM05D006671 ORTHO05D008637 2.8e-161 572.8 537 52.5
FAN14G1234 Fragaria x ananassa HOM05D006671 ORTHO05D008637 6.3e-161 571.6 534 55.2
Carub.0001s4299 Capsella rubella HOM05D006671 ORTHO05D008637 8.2e-161 571.2 540 52.2
arahy.Tifrunner.gnm1.ann1.NMV212 Arachis hypogaea HOM05D006671 ORTHO05D008637 1.4e-160 570.5 537 54.7
BolC3t21495H Brassica oleracea HOM05D006671 ORTHO05D008637 3.1e-160 569.3 536 52.2
Lsat_1_v5_gn_5_137600 Lactuca sativa HOM05D006671 ORTHO05D008637 1.2e-159 567.4 525 55.8
arahy.Tifrunner.gnm1.ann1.YS0GDU Arachis hypogaea HOM05D006671 ORTHO05D008637 2.0e-159 566.6 537 54.4
AL1G62410 Arabidopsis lyrata HOM05D006671 ORTHO05D008637 5.9e-159 565.1 540 52.4
CARHR044010 Cardamine hirsuta HOM05D006671 ORTHO05D008637 2.2e-158 563.1 537 52.1
GSVIVG01026409001 Vitis vinifera HOM05D006671 ORTHO05D008637 3.8e-158 562.4 764 42.8
A08p01430 Brassica napus HOM05D006671 ORTHO05D008637 6.5e-158 561.6 538 52.8
BraA08t32194Z Brassica rapa HOM05D006671 ORTHO05D008637 1.9e-157 560.1 538 52.6
BcaC01g01410 Brassica carinata HOM05D006671 ORTHO05D008637 7.2e-157 558.1 534 52.2
Cpa.g.sc229.10 Carica papaya HOM05D006671 ORTHO05D008637 1.2e-156 557.4 544 52.9
C03p91740 Brassica napus HOM05D006671 ORTHO05D008637 2.7e-156 556.2 534 52.1
HPP92_002242 Vanilla planifolia HOM05D006671 ORTHO05D008637 6.1e-156 555.1 537 55.7
Dinv20369 Davidia involucrata HOM05D006671 ORTHO05D008637 2.3e-155 553.1 364 71.7
Sabra01G0131200 Salix brachista HOM05D006671 ORTHO05D008637 8.2e-153 544.7 584 50.2
FAN09G2187 Fragaria x ananassa HOM05D006671 ORTHO05D008637 3.4e-151 539.3 534 53.0
unitig_699.g19656 Utricularia gibba HOM05D006671 ORTHO05D001254 3.4e-151 539.3 533 53.5
Nitab4.5_0000357g0220 Nicotiana tabacum HOM05D006671 ORTHO05D008637 5.9e-151 538.5 535 54.4
Os03g0397300 Oryza sativa ssp. japonica HOM05D006671 ORTHO05D008637 1.9e-149 533.5 534 52.2
MBI13_g05970_MAGBIO Magnolia biondii HOM05D006671 ORTHO05D008637 3.2e-149 532.7 486 56.8
Nitab4.5_0003469g0010 Nicotiana tabacum HOM05D006671 ORTHO05D008637 1.6e-148 530.4 544 53.5
FAN14G2634 Fragaria x ananassa HOM05D006671 ORTHO05D008637 1.0e-147 527.7 534 52.4
Ah.08g217540 Amaranthus hybridus HOM05D006671 ORTHO05D008637 3.9e-147 525.8 533 51.8
AUR62001377 Chenopodium quinoa HOM05D006671 ORTHO05D008637 1.5e-146 523.9 483 54.0
Zm00001eb392730 Zea mays HOM05D006671 ORTHO05D008637 2.0e-146 523.5 538 51.3
AUR62044064 Chenopodium quinoa HOM05D006671 ORTHO05D008637 1.5e-143 513.8 470 54.9
PSO170G0973 Papaver somniferum HOM05D006671 ORTHO05D008637 1.5e-143 513.8 475 55.8
CDE06G0010 Ceratophyllum demersum HOM05D006671 ORTHO05D008637 1.3e-142 510.8 515 51.7
Actinidia33812 Actinidia chinensis HOM05D006671 ORTHO05D008637 3.8e-142 509.2 531 53.9
Peaxi162Scf00177g00616 Petunia axillaris HOM05D006671 ORTHO05D008637 2.7e-127 459.9 535 48.4
SEGI_35568 Sequoiadendron giganteum HOM05D006671 ORTHO05D008637 3.2e-125 453.0 446 51.8
Pp3c21_8010 Physcomitrium patens HOM05D006671 ORTHO05D008637 1.1e-117 427.9 544 44.1
SMO347G0345 Selaginella moellendorffii HOM05D006671 ORTHO05D008637 3.1e-112 409.8 536 42.2
AagrBONN_evm.TU.Sc2ySwM_362.1979 Anthoceros agrestis HOM05D006671 ORTHO05D008637 3.4e-106 389.8 542 42.8
VMungo0331G0057 Vigna mungo HOM05D006671 ORTHO05D008637 4.6e-103 379.4 297 63.3
Ca_23471_v3 Cicer arietinum L. HOM05D006671 ORTHO05D008637 3.9e-102 376.3 471 46.9
Hma1.2p1_1104F.1_g257490 Hydrangea macrophylla HOM05D006671 ORTHO05D008637 4.3e-101 372.9 256 68.8
QL03p047059 Quercus lobata HOM05D006671 ORTHO05D008637 9.8e-98 361.7 263 67.7
THA.LOC104822767 Tarenaya hassleriana HOM05D006671 ORTHO05D008637 1.3e-97 361.3 350 50.9
Hma1.2p1_1104F.1_g257500 Hydrangea macrophylla HOM05D006671 ORTHO05D008637 1.1e-80 305.1 268 58.2
Oeu006761.2 Olea europaea HOM05D006671 ORTHO05D008637 4.6e-79 299.7 288 54.2
Mapoly0048s0109 Marchantia polymorpha HOM05D006671 ORTHO05D008637 2.5e-77 293.9 537 34.6
Gohir.A13G116750 Gossypium hirsutum HOM05D006671 ORTHO05D008637 7.1e-72 275.8 209 64.1
QL03p047068 Quercus lobata HOM05D006671 ORTHO05D008637 3.9e-70 270.0 280 50.0
FAN02G1271 Fragaria x ananassa HOM05D006671 ORTHO05D008637 4.3e-69 266.5 312 46.2
BcaNung02916 Brassica carinata HOM05D006671 ORTHO05D008637 1.3e-68 265.0 503 34.8
Gohir.A13G116801 Gossypium hirsutum HOM05D006671 ORTHO05D008637 3.0e-62 243.8 250 52.0
ATR0006G018 Amborella trichopoda HOM05D006671 ORTHO05D008637 9.0e-59 232.3 271 47.2
THA.LOC104803433 Tarenaya hassleriana HOM05D006671 ORTHO05D008637 4.9e-57 226.5 185 57.8
SEGI_04788 Sequoiadendron giganteum HOM05D006671 ORTHO05D008637 7.9e-55 219.2 273 46.5
MD17G1156100 Malus domestica HOM05D006671 ORTHO05D008637 6.0e-47 193.0 441 33.8
Actinidia21851 Actinidia chinensis HOM05D006671 ORTHO05D008637 6.7e-46 189.5 204 51.5
HPP92_002174 Vanilla planifolia HOM05D000872 ORTHO05D007886 4.2e-40 170.2 303 36.6
Hund05690 Selenicereus undatus HOM05D006671 ORTHO05D008637 2.1e-39 167.9 127 69.3
Actinidia21852 Actinidia chinensis HOM05D006671 ORTHO05D008637 4.8e-36 156.8 122 62.3
MCO09G741 Micromonas commoda HOM05D006671 ORTHO05D008637 6.9e-35 152.9 427 29.7
Cfa022026 Carpinus fangiana HOM05D002393 ORTHO05D123579 2.6e-18 97.8 486 24.5
FAN05G4676 Fragaria x ananassa HOM05D006671 ORTHO05D008637 5.9e-18 96.7 110 49.1
Lsat_1_v5_gn_2_122021 Lactuca sativa HOM05D006671 ORTHO05D008637 1.5e-16 92.0 145 38.6
Lsat_1_v5_gn_2_91241 Lactuca sativa HOM05D006671 ORTHO05D011576 1.2e-10 72.4 83 49.4
Lsat_1_v5_gn_1_119700 Lactuca sativa HOM05D006671 ORTHO05D011576 1.0e-09 69.3 93 46.2
BcaC09g48416 Brassica carinata HOM05D006671 ORTHO05D027459 1.9e-08 65.1 135 31.1
C01p50010 Brassica napus HOM05D010519 ORTHO05D027459 3.2e-08 64.3 142 31.0
BolC1t04958H Brassica oleracea HOM05D010519 ORTHO05D027459 3.2e-08 64.3 142 31.0
CSS0027715 Camellia sinensis var. sinensis HOM05D006671 ORTHO05D008637 2.7e-07 61.2 39 66.7


User provided reference genes

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