Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc04_g00380 Coffea canephora HOM05D007092 ORTHO05D008947 1.3e-199 699.5 340 100.0
Dinv37796 Davidia involucrata HOM05D007092 ORTHO05D008947 1.7e-111 406.8 258 73.3
Oeu049655.1 Olea europaea HOM05D007092 ORTHO05D008947 2.1e-109 399.8 256 73.8
QL05p083231 Quercus lobata HOM05D007092 ORTHO05D008947 3.9e-108 395.6 250 72.8
Ciclev10026125m.g Citrus clementina HOM05D007092 ORTHO05D008947 2.5e-107 392.9 253 72.3
CSS0038887 Camellia sinensis var. sinensis HOM05D007092 ORTHO05D008947 1.3e-106 390.6 257 72.0
Hma1.2p1_1104F.1_g257360 Hydrangea macrophylla HOM05D007092 ORTHO05D008947 1.6e-106 390.2 255 72.9
Sopen06g022680 Solanum pennellii HOM05D007092 ORTHO05D008947 2.1e-106 389.8 284 65.5
Solyc06g063230.3 Solanum lycopersicum HOM05D007092 ORTHO05D008947 2.8e-106 389.4 265 68.3
Eucgr.F04011 Eucalyptus grandis HOM05D007092 ORTHO05D008947 6.2e-106 388.3 274 68.6
PGSC0003DMG400026517 Solanum tuberosum HOM05D007092 ORTHO05D008947 1.1e-105 387.5 287 64.5
Actinidia21869 Actinidia chinensis HOM05D007092 ORTHO05D008947 3.1e-105 386.0 258 69.8
Nn2g12583 Nelumbo nucifera HOM05D007092 ORTHO05D008947 4.0e-105 385.6 273 68.9
Nitab4.5_0002661g0010 Nicotiana tabacum HOM05D007092 ORTHO05D008947 6.9e-105 384.8 287 64.8
Atru.chr1.2779 Acer truncatum HOM05D007092 ORTHO05D008947 2.6e-104 382.9 252 70.6
Lsat_1_v5_gn_5_137421 Lactuca sativa HOM05D007092 ORTHO05D008947 2.6e-104 382.9 329 58.1
Nitab4.5_0008628g0030 Nicotiana tabacum HOM05D007092 ORTHO05D008947 2.6e-104 382.9 287 64.5
PGR102G2093 Punica granatum HOM05D007092 ORTHO05D008947 2.6e-104 382.9 286 64.7
HanXRQChr10g0311491 Helianthus annuus HOM05D007092 ORTHO05D008947 1.3e-103 380.6 258 69.4
Sc12g0010950 Simmondsia chinensis HOM05D007092 ORTHO05D008947 1.3e-103 380.6 247 72.5
Thecc.06G015800 Theobroma cacao HOM05D007092 ORTHO05D008947 1.7e-103 380.2 254 69.7
VMungo0647G0167 Vigna mungo HOM05D007092 ORTHO05D008947 2.9e-103 379.4 267 66.7
FvH4_6g37290 Fragaria vesca HOM05D007092 ORTHO05D008947 3.8e-103 379.0 269 65.8
GSVIVG01016136001 Vitis vinifera HOM05D007092 ORTHO05D008947 3.8e-103 379.0 254 68.5
RcHm_v2.0_Chr2g0150121 Rosa chinensis HOM05D007092 ORTHO05D008947 4.9e-103 378.6 294 61.9
MD09G1158700 Malus domestica HOM05D007092 ORTHO05D008947 1.1e-102 377.5 252 69.4
Prupe.3G167100 Prunus persica HOM05D007092 ORTHO05D008947 2.4e-102 376.3 263 68.8
Medtr4g006030 Medicago truncatula HOM05D007092 ORTHO05D008947 4.2e-102 375.6 258 66.7
CANSAT01G0482 Cannabis sativa HOM05D007092 ORTHO05D008947 5.4e-102 375.2 292 63.0
ECA234G1665 Erigeron canadensis HOM05D007092 ORTHO05D008947 3.5e-101 372.5 275 64.0
Phvul.008G255700 Phaseolus vulgaris HOM05D007092 ORTHO05D008947 6.0e-101 371.7 267 65.2
Glyma.07G003900 Glycine max HOM05D007092 ORTHO05D008947 1.7e-100 370.2 256 67.2
TPR.G38753 Trifolium pratense HOM05D007092 ORTHO05D008947 2.3e-100 369.8 256 66.0
Manes.01G181400 Manihot esculenta HOM05D007092 ORTHO05D008947 8.7e-100 367.9 270 65.6
TAR383G0306 Trochodendron aralioides HOM05D007092 ORTHO05D008947 8.7e-100 367.9 236 72.0
arahy.Tifrunner.gnm1.ann1.U4SUAB Arachis hypogaea HOM05D007092 ORTHO05D008947 7.3e-99 364.8 272 61.4
CsaV3_7G033820 Cucumis sativus L. HOM05D007092 ORTHO05D008947 7.3e-99 364.8 253 68.0
Lalb_Chr04g0264731 Lupinus albus HOM05D007092 ORTHO05D008947 7.3e-99 364.8 318 57.9
Peaxi162Scf00207g01537 Petunia axillaris HOM05D007092 ORTHO05D008947 2.1e-98 363.2 280 61.1
PSO063G1240 Papaver somniferum HOM05D007092 ORTHO05D008947 4.8e-98 362.1 260 67.3
Ca_20954_v3 Cicer arietinum L. HOM05D007092 ORTHO05D008947 8.1e-98 361.3 306 58.5
arahy.Tifrunner.gnm1.ann1.2I6Q5Y Arachis hypogaea HOM05D007092 ORTHO05D008947 1.1e-97 360.9 272 61.0
Lj3g0013116 Lotus japonicus HOM05D007092 ORTHO05D008947 2.0e-96 356.7 297 58.9
FAN02G1258 Fragaria x ananassa HOM05D007092 ORTHO05D008947 3.4e-96 355.9 307 57.3
Aa31LG4G3360 Aethionema arabicum HOM05D007092 ORTHO05D008947 2.9e-95 352.8 249 63.1
Aqoxy7G03199 Aquilegia oxysepala HOM05D007092 ORTHO05D008947 1.1e-94 350.9 252 67.1
AUR62025584 Chenopodium quinoa HOM05D007092 ORTHO05D008947 1.9e-94 350.1 279 63.4
EL10Ac7g18225 Beta vulgaris HOM05D007092 ORTHO05D008947 7.1e-94 348.2 339 54.9
Migut.I01177 Erythranthe guttata HOM05D007092 ORTHO05D008947 9.3e-94 347.8 258 65.1
AT1G73090 Arabidopsis thaliana HOM05D007092 ORTHO05D008947 2.1e-93 346.7 249 63.5
ClCG09G001510 Citrullus lanatus HOM05D007092 ORTHO05D008947 2.1e-93 346.7 273 63.0
Carub.0002s1986 Capsella rubella HOM05D007092 ORTHO05D008947 2.7e-93 346.3 249 63.1
Haze_15817 Corylus avellana HOM05D007092 ORTHO05D008947 2.7e-93 346.3 256 65.2
Duzib160G0445 Durio zibethinus HOM05D007092 ORTHO05D008947 2.7e-93 346.3 253 64.8
BolC2t09103H Brassica oleracea HOM05D007092 ORTHO05D008947 4.6e-93 345.5 253 62.1
MBI14_g30703_MAGBIO Magnolia biondii HOM05D007092 ORTHO05D008947 4.6e-93 345.5 308 59.1
Thhalv10018923m.g Eutrema salsugineum HOM05D007092 ORTHO05D008947 7.9e-93 344.7 249 63.9
A02p18440 Brassica napus HOM05D007092 ORTHO05D008947 1.0e-92 344.4 250 62.4
BraA02t06883Z Brassica rapa HOM05D007092 ORTHO05D008947 1.0e-92 344.4 250 62.4
Gohir.D10G007300 Gossypium hirsutum HOM05D007092 ORTHO05D008947 1.8e-92 343.6 233 67.0
SalBow6G0042 Salvia bowleyana HOM05D007092 ORTHO05D008947 1.8e-92 343.6 233 68.7
Gorai.011G008000 Gossypium raimondii HOM05D007092 ORTHO05D008947 2.3e-92 343.2 233 67.0
Gohir.A10G007400 Gossypium hirsutum HOM05D007092 ORTHO05D008947 3.0e-92 342.8 233 67.0
AL2G32840 Arabidopsis lyrata HOM05D007092 ORTHO05D008947 6.7e-92 341.7 249 62.2
ATR0580G293 Amborella trichopoda HOM05D007092 ORTHO05D008947 1.5e-91 340.5 254 65.4
C02p30520 Brassica napus HOM05D007092 ORTHO05D008947 1.9e-91 340.1 250 62.4
Sp5g28050 Schrenkiella parvula HOM05D007092 ORTHO05D008947 2.1e-90 336.7 250 62.0
CARHR066060 Cardamine hirsuta HOM05D007092 ORTHO05D008947 8.1e-90 334.7 249 61.4
COL.COLO4_22872 Corchorus olitorius HOM05D007092 ORTHO05D008947 1.8e-89 333.6 264 61.7
Sed0004999 Sechium edule HOM05D007092 ORTHO05D008947 9.0e-89 331.3 238 66.8
Sabra10G0194500 Salix brachista HOM05D007092 ORTHO05D008947 7.6e-88 328.2 305 58.4
Potri.010G250100 Populus trichocarpa HOM05D007092 ORTHO05D008947 1.7e-87 327.0 301 58.1
unitig_748.g7475 Utricularia gibba HOM05D007092 ORTHO05D008947 2.2e-87 326.6 257 63.4
Hund18612 Selenicereus undatus HOM05D007092 ORTHO05D008947 1.1e-83 314.3 297 55.6
THA.LOC104823333 Tarenaya hassleriana HOM05D007092 ORTHO05D008947 9.6e-83 311.2 294 54.1
MELO3C024294.2 Cucumis melo HOM05D007092 ORTHO05D008947 1.1e-81 307.8 251 61.4
Lj6C21G9 Lonicera japonica HOM05D007092 ORTHO05D008947 1.7e-79 300.4 256 57.8
HPP92_017449 Vanilla planifolia HOM05D007092 ORTHO05D008947 8.4e-79 298.1 300 49.7
AUR62001368 Chenopodium quinoa HOM05D007092 ORTHO05D008947 2.3e-76 290.0 251 58.2
arahy.Tifrunner.gnm1.ann1.65RD4S Arachis hypogaea HOM05D007092 ORTHO05D008947 5.9e-72 275.4 214 58.9
SGA_v2.0_scaffold122G33289 Striga asiatica HOM05D002895 ORTHO05D003286 9.4e-70 268.1 246 54.1
CDE07G2035 Ceratophyllum demersum HOM05D007092 ORTHO05D008947 7.4e-67 258.5 280 50.7
Lj6C3G1 Lonicera japonica HOM05D000076 ORTHO05D001279 4.1e-65 252.7 230 55.7
Hund18613 Selenicereus undatus HOM05D007092 ORTHO05D008947 1.4e-57 227.6 181 60.2
Mapoly0073s0046 Marchantia polymorpha HOM05D007092 ORTHO05D008947 3.8e-55 219.5 260 44.2
AagrBONN_evm.TU.Sc2ySwM_344.2112 Anthoceros agrestis HOM05D007092 ORTHO05D008947 1.5e-51 207.6 247 43.7
Cfa021192 Carpinus fangiana HOM05D007092 ORTHO05D008947 5.7e-51 205.7 132 71.2
Pp3c13_10570 Physcomitrium patens HOM05D007092 ORTHO05D008947 1.3e-50 204.5 255 41.2
Psat7g263560 Pisum sativum HOM05D007092 ORTHO05D008947 6.3e-50 202.2 164 58.5
SMO230G0107 Selaginella moellendorffii HOM05D007092 ORTHO05D008947 6.1e-45 185.7 254 39.0
FAN09G2007 Fragaria x ananassa HOM05D007092 ORTHO05D008947 9.8e-43 178.3 158 57.0
arahy.Tifrunner.gnm1.ann1.NXC5E0 Arachis hypogaea HOM05D007092 ORTHO05D008947 5.0e-39 166.0 106 67.9
C02p30540 Brassica napus HOM05D007092 ORTHO05D008947 1.8e-33 147.5 104 59.6
arahy.Tifrunner.gnm1.ann1.DEI7NY Arachis hypogaea HOM05D007092 ORTHO05D008947 3.5e-32 143.3 80 72.5
SMO336G0036 Selaginella moellendorffii HOM05D007092 ORTHO05D008947 1.9e-30 137.5 286 30.4
Glyma.08G222700 Glycine max HOM05D007092 ORTHO05D008947 3.3e-30 136.7 80 75.0
RcHm_v2.0_Chr1g0381181 Rosa chinensis HOM05D007092 ORTHO05D008947 4.7e-29 132.9 135 53.3
SEGI_20536 Sequoiadendron giganteum HOM05D007092 ORTHO05D008947 4.6e-24 116.3 85 61.2
Lj6A3T47 Lonicera japonica HOM05D007092 ORTHO05D008947 5.9e-24 115.9 67 71.6
arahy.Tifrunner.gnm1.ann1.QYJ7WZ Arachis hypogaea HOM05D007092 ORTHO05D008947 1.2e-16 91.7 72 59.7
arahy.Tifrunner.gnm1.ann1.TPQB3Q Arachis hypogaea HOM05D007092 ORTHO05D008947 1.2e-16 91.7 72 59.7
arahy.Tifrunner.gnm1.ann1.BLVE7G Arachis hypogaea HOM05D007092 ORTHO05D008947 3.5e-16 90.1 49 73.5
arahy.Tifrunner.gnm1.ann1.LQFB73 Arachis hypogaea HOM05D007092 ORTHO05D008947 3.5e-16 90.1 49 73.5
Cpa.g.sc1009.2 Carica papaya HOM05D007092 ORTHO05D008947 5.0e-15 86.3 51 70.6
BcaC07g40307 Brassica carinata HOM05D007092 ORTHO05D008947 4.7e-13 79.7 63 52.4
arahy.Tifrunner.gnm1.ann1.KBSP04 Arachis hypogaea HOM05D002221 ORTHO05D002626 2.6e-11 73.9 59 55.9
arahy.Tifrunner.gnm1.ann1.R6H1XR Arachis hypogaea HOM05D002221 ORTHO05D002626 2.6e-11 73.9 59 55.9
Actinidia21637 Actinidia chinensis HOM05D007092 ORTHO05D008947 2.9e-10 70.5 49 67.3
arahy.Tifrunner.gnm1.ann1.AT2CXE Arachis hypogaea HOM05D007092 ORTHO05D008947 1.1e-09 68.6 57 52.6
Actinidia38794 Actinidia chinensis HOM05D007092 ORTHO05D008947 5.4e-09 66.2 55 56.4
Cpa.g.sc3948.1 Carica papaya HOM05D007092 ORTHO05D008947 2.1e-08 64.3 32 78.1
BcaB05g22026 Brassica carinata HOM05D007092 ORTHO05D008947 7.8e-08 62.4 61 42.6
SEGI_38624 Sequoiadendron giganteum HOM05D007092 ORTHO05D050975 4.3e-06 56.6 46 52.2


User provided reference genes

Program Settings