Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc04_g00370 Coffea canephora HOM05D005491 ORTHO05D006973 5.1e-190 667.5 329 100.0
Dinv20356 Davidia involucrata HOM05D005491 ORTHO05D006973 1.6e-119 433.3 340 67.6
CSS0040638 Camellia sinensis var. sinensis HOM05D005491 ORTHO05D006973 6.0e-114 414.8 330 66.1
GSVIVG01016137001 Vitis vinifera HOM05D005491 ORTHO05D006973 9.9e-109 397.5 329 64.1
vmacro17061 Vaccinium macrocarpon HOM05D005491 ORTHO05D006973 6.4e-108 394.8 340 62.6
Atru.chr1.2698 Acer truncatum HOM05D005491 ORTHO05D006973 2.7e-106 389.4 330 60.9
Ah.15g094670 Amaranthus hybridus HOM05D005491 ORTHO05D006973 1.1e-104 384.0 324 60.8
CANSAT01G1753 Cannabis sativa HOM05D005491 ORTHO05D006973 1.9e-104 383.3 335 60.0
Nitab4.5_0002885g0050 Nicotiana tabacum HOM05D005491 ORTHO05D006973 2.5e-104 382.9 327 61.5
Ciclev10026115m.g Citrus clementina HOM05D005491 ORTHO05D006973 9.6e-104 380.9 329 61.1
MD09G1158800 Malus domestica HOM05D005491 ORTHO05D006973 6.2e-103 378.3 325 62.5
Nitab4.5_0001691g0110 Nicotiana tabacum HOM05D005491 ORTHO05D006973 6.2e-103 378.3 327 60.9
Rhsim12G0214300 Rhododendron simsii HOM05D005491 ORTHO05D006973 1.4e-102 377.1 343 61.2
RcHm_v2.0_Chr2g0150111 Rosa chinensis HOM05D005491 ORTHO05D006973 3.1e-102 375.9 329 59.9
Thecc.06G064400 Theobroma cacao HOM05D005491 ORTHO05D006973 2.0e-101 373.2 326 60.4
Gorai.009G118600 Gossypium raimondii HOM05D005491 ORTHO05D006973 3.4e-101 372.5 322 60.9
Duzib192G0032 Durio zibethinus HOM05D005491 ORTHO05D006973 4.5e-101 372.1 329 59.6
Hund18611 Selenicereus undatus HOM05D005491 ORTHO05D006973 4.5e-101 372.1 328 60.4
Eucgr.F04012 Eucalyptus grandis HOM05D005491 ORTHO05D006973 1.7e-100 370.2 330 60.3
Gohir.D05G114500 Gossypium hirsutum HOM05D005491 ORTHO05D006973 1.7e-100 370.2 322 60.9
Lj6C21T3 Lonicera japonica HOM05D005491 ORTHO05D006973 4.9e-100 368.6 322 58.4
FvH4_6g37280 Fragaria vesca HOM05D005491 ORTHO05D006973 8.4e-100 367.9 329 59.3
SGA_v2.0_scaffold4G02103 Striga asiatica HOM05D005491 ORTHO05D006973 4.2e-99 365.5 338 59.5
EL10Ac7g18224 Beta vulgaris HOM05D005491 ORTHO05D006973 1.2e-98 364.0 349 57.3
PGSC0003DMG400009162 Solanum tuberosum HOM05D005491 ORTHO05D006973 1.2e-98 364.0 320 60.0
AUR62025582 Chenopodium quinoa HOM05D005491 ORTHO05D006973 1.6e-98 363.6 329 60.2
PGR102G1295 Punica granatum HOM05D005491 ORTHO05D006973 1.6e-98 363.6 327 58.1
Sc15g0000930 Simmondsia chinensis HOM05D005491 ORTHO05D006973 1.6e-98 363.6 322 61.2
Manes.16G045400 Manihot esculenta HOM05D005491 ORTHO05D006973 2.1e-98 363.2 330 60.0
Peaxi162Scf00038g02533 Petunia axillaris HOM05D005491 ORTHO05D006973 6.0e-98 361.7 320 60.0
FAN02G3895 Fragaria x ananassa HOM05D005491 ORTHO05D006973 1.8e-97 360.1 341 57.8
SalBow7G0632 Salvia bowleyana HOM05D005491 ORTHO05D006973 1.8e-97 360.1 326 60.4
MELO3C006296.2 Cucumis melo HOM05D005491 ORTHO05D006973 2.3e-97 359.8 326 58.3
CsaV3_3G010780 Cucumis sativus L. HOM05D005491 ORTHO05D006973 3.9e-97 359.0 327 58.1
arahy.Tifrunner.gnm1.ann1.PDFG4L Arachis hypogaea HOM05D005491 ORTHO05D006973 5.1e-97 358.6 320 60.0
TAR383G0879 Trochodendron aralioides HOM05D005491 ORTHO05D006973 5.1e-97 358.6 264 67.4
Potri.010G250200 Populus trichocarpa HOM05D005491 ORTHO05D006973 6.7e-97 358.2 334 59.6
CiPaw.02G049600 Carya illinoinensis HOM05D005491 ORTHO05D006973 1.9e-96 356.7 320 61.2
arahy.Tifrunner.gnm1.ann1.5V72PU Arachis hypogaea HOM05D005491 ORTHO05D006973 3.3e-96 355.9 320 59.7
Lj3g0002967 Lotus japonicus HOM05D005491 ORTHO05D006973 3.3e-96 355.9 333 59.5
FAN09G1743 Fragaria x ananassa HOM05D005491 ORTHO05D006973 7.4e-96 354.8 333 57.7
Nn2g12576 Nelumbo nucifera HOM05D005491 ORTHO05D006973 2.1e-95 353.2 337 54.6
ClCG05G003150 Citrullus lanatus HOM05D005491 ORTHO05D006973 2.8e-95 352.8 357 54.3
Sed0002659 Sechium edule HOM05D005491 ORTHO05D006973 2.8e-95 352.8 328 57.3
CAN.G790.23 Capsicum annuum HOM05D005491 ORTHO05D006973 6.2e-95 351.7 326 58.0
FAN14G5581 Fragaria x ananassa HOM05D005491 ORTHO05D005725 2.4e-94 349.7 333 57.1
Migut.D00894 Erythranthe guttata HOM05D005491 ORTHO05D006973 4.0e-94 349.0 338 57.1
Psat7g263520 Pisum sativum HOM05D005491 ORTHO05D006973 4.0e-94 349.0 328 57.9
Sed0027406 Sechium edule HOM05D005491 ORTHO05D006973 5.3e-94 348.6 325 58.2
Lj6A3G42 Lonicera japonica HOM05D005491 ORTHO05D006973 2.2e-92 343.2 311 57.2
Oeu023761.1 Olea europaea HOM05D005491 ORTHO05D006973 2.9e-92 342.8 249 67.1
BraA05t21640Z Brassica rapa HOM05D005491 ORTHO05D006973 3.8e-92 342.4 299 58.9
TPR.G38706 Trifolium pratense HOM05D005491 ORTHO05D006973 3.8e-92 342.4 317 56.8
BraA01t03481Z Brassica rapa HOM05D005491 ORTHO05D006973 1.4e-91 340.5 329 55.9
A01p33690 Brassica napus HOM05D005491 ORTHO05D006973 3.2e-91 339.3 323 57.0
BcaC05g28263 Brassica carinata HOM05D005491 ORTHO05D006973 4.2e-91 339.0 290 59.3
C05p42580 Brassica napus HOM05D005491 ORTHO05D006973 4.2e-91 339.0 290 59.3
PSO063G4509 Papaver somniferum HOM05D005491 ORTHO05D006973 7.1e-91 338.2 343 53.9
A05p27490 Brassica napus HOM05D005491 ORTHO05D006973 9.3e-91 337.8 327 55.4
Lalb_Chr04g0264721 Lupinus albus HOM05D005491 ORTHO05D006973 9.3e-91 337.8 284 60.9
PSO782G2961 Papaver somniferum HOM05D005491 ORTHO05D006973 9.3e-91 337.8 343 53.9
TWI18G1464 Tripterygium wilfordii HOM05D005491 ORTHO05D006973 9.3e-91 337.8 260 62.7
AT3G21200 Arabidopsis thaliana HOM05D005491 ORTHO05D006973 1.2e-90 337.4 328 54.9
BolC5t32978H Brassica oleracea HOM05D005491 ORTHO05D006973 2.1e-90 336.7 290 59.0
Carub.0003s2116 Capsella rubella HOM05D005491 ORTHO05D006973 2.1e-90 336.7 310 57.1
DCAR_007669 Daucus carota HOM05D005491 ORTHO05D006973 2.1e-90 336.7 342 54.7
CARHR097080 Cardamine hirsuta HOM05D005491 ORTHO05D006973 2.7e-90 336.3 326 55.5
Ca_20955_v3 Cicer arietinum L. HOM05D005491 ORTHO05D006973 3.5e-90 335.9 330 55.5
Thhalv10021146m.g Eutrema salsugineum HOM05D005491 ORTHO05D006973 4.6e-90 335.5 332 54.8
Thhalv10021148m.g Eutrema salsugineum HOM05D005491 ORTHO05D006973 4.6e-90 335.5 332 54.8
AL3G35200 Arabidopsis lyrata HOM05D005491 ORTHO05D006973 6.0e-90 335.1 328 54.3
Sopen03g041620 Solanum pennellii HOM05D005491 ORTHO05D006973 6.0e-90 335.1 275 61.8
BcaC09g49056 Brassica carinata HOM05D005491 ORTHO05D006973 7.9e-90 334.7 332 54.5
C01p43060 Brassica napus HOM05D005491 ORTHO05D006973 1.8e-89 333.6 332 54.5
BolC1t04253H Brassica oleracea HOM05D005491 ORTHO05D006973 1.8e-89 333.6 332 54.5
Solyc03g123880.3 Solanum lycopersicum HOM05D005491 ORTHO05D006973 2.3e-89 333.2 275 61.8
Medtr4g006200 Medicago truncatula HOM05D005491 ORTHO05D006973 5.1e-89 332.0 330 55.2
THA.LOC104817926 Tarenaya hassleriana HOM05D005491 ORTHO05D006973 5.1e-89 332.0 341 54.5
Aa31LG8G7890 Aethionema arabicum HOM05D005491 ORTHO05D006973 8.7e-89 331.3 327 54.1
Sp3g19180 Schrenkiella parvula HOM05D005491 ORTHO05D006973 8.7e-89 331.3 331 54.7
BcaB06g26202 Brassica carinata HOM05D005491 ORTHO05D006973 3.3e-88 329.3 325 55.7
Glyma.08G222600 Glycine max HOM05D005491 ORTHO05D006973 8.2e-87 324.7 327 55.0
Lsat_1_v5_gn_4_88641 Lactuca sativa HOM05D005491 ORTHO05D006973 8.2e-87 324.7 334 52.7
BcaB04g20605 Brassica carinata HOM05D005491 ORTHO05D006973 4.5e-85 318.9 332 54.2
Gohir.A05G114100 Gossypium hirsutum HOM05D005491 ORTHO05D006973 1.0e-84 317.8 326 55.5
VMungo0647G0411 Vigna mungo HOM05D005491 ORTHO05D006973 4.9e-84 315.5 286 57.7
Actinidia31136 Actinidia chinensis HOM05D005491 ORTHO05D006973 1.9e-83 313.5 348 53.2
unitig_8.g3563 Utricularia gibba HOM05D006979 ORTHO05D008857 2.5e-83 313.2 282 56.7
Aqoxy7G03200 Aquilegia oxysepala HOM05D005491 ORTHO05D006973 7.1e-83 311.6 335 51.3
CDE02G1684 Ceratophyllum demersum HOM05D005491 ORTHO05D006973 7.1e-83 311.6 321 53.0
MBI14_g30702_MAGBIO Magnolia biondii HOM05D005491 ORTHO05D006973 9.3e-83 311.2 406 45.8
AUR62001366 Chenopodium quinoa HOM05D004422 ORTHO05D007331 4.6e-82 308.9 230 67.0
BcaNung05297 Brassica carinata HOM05D005491 ORTHO05D006973 6.0e-82 308.5 332 52.4
Phvul.008G255600 Phaseolus vulgaris HOM05D005491 ORTHO05D006973 3.9e-81 305.8 333 51.4
CDE05G1859 Ceratophyllum demersum HOM05D005491 ORTHO05D006973 6.3e-79 298.5 252 57.9
ATR0580G202 Amborella trichopoda HOM05D005491 ORTHO05D006973 1.4e-78 297.4 249 59.8
Sabra10G0194700 Salix brachista HOM05D005491 ORTHO05D006973 2.5e-75 286.6 432 43.8
HanXRQChr09g0277401 Helianthus annuus HOM05D005491 ORTHO05D006973 7.9e-74 281.6 307 51.1
Zm00001eb319280 Zea mays HOM05D005491 ORTHO05D006973 4.1e-70 269.2 273 49.8
HPP92_013427 Vanilla planifolia HOM05D005491 ORTHO05D006973 5.9e-69 265.4 262 54.6
COL.COLO4_31205 Corchorus olitorius HOM05D005491 ORTHO05D006973 1.1e-64 251.1 257 55.3
Haze_10760 Corylus avellana HOM05D005491 ORTHO05D006973 1.3e-63 247.7 197 62.9
ECA232G0321 Erigeron canadensis HOM05D005491 ORTHO05D006973 8.8e-57 224.9 243 48.1
Actinidia00637 Actinidia chinensis HOM05D005491 ORTHO05D006973 5.7e-56 222.2 280 50.0
Pp3c7_5080 Physcomitrium patens HOM05D005491 ORTHO05D006973 1.7e-55 220.7 248 45.2
Mapoly0005s0279 Marchantia polymorpha HOM05D005491 ORTHO05D006973 2.8e-55 219.9 266 44.0
AagrBONN_evm.TU.Sc2ySwM_368.2001 Anthoceros agrestis HOM05D005491 ORTHO05D006973 1.3e-52 211.1 251 43.0
Zm00001eb170870 Zea mays HOM05D005491 ORTHO05D006973 6.5e-52 208.8 297 41.4
MSTRG.4527 Avicennia marina HOM05D005491 ORTHO05D006973 5.5e-51 205.7 130 73.1
SGA_v2.0_scaffold68G22804 Striga asiatica HOM05D005491 ORTHO05D006973 3.4e-40 169.9 205 46.8
arahy.Tifrunner.gnm1.ann1.S1MR2L Arachis hypogaea HOM05D005491 ORTHO05D006973 1.4e-33 147.9 93 72.0
Cfa005563 Carpinus fangiana HOM05D005491 ORTHO05D006973 1.2e-32 144.8 165 57.6
Haze_10765 Corylus avellana HOM05D005491 ORTHO05D006973 2.0e-32 144.1 166 54.8
Prupe.3G167000 Prunus persica HOM05D005491 ORTHO05D006973 1.1e-30 138.3 176 53.4
Cpa.g.c38087 Carica papaya HOM05D005491 ORTHO05D006973 1.4e-30 137.9 166 51.8
SMO146G0309 Selaginella moellendorffii HOM05D005491 ORTHO05D006973 1.8e-30 137.5 152 42.1
Glyma.14G098400 Glycine max HOM05D005491 ORTHO05D006973 3.8e-28 129.8 109 52.3
MCO13G019 Micromonas commoda HOM05D005491 ORTHO05D006973 1.9e-27 127.5 264 30.7
MD17G1145100 Malus domestica HOM05D005491 ORTHO05D006973 3.1e-25 120.2 125 51.2
RcHm_v2.0_Chr3g0481151 Rosa chinensis HOM05D000090 ORTHO05D000083 5.2e-25 119.4 76 67.1
Medtr3g006055 Medicago truncatula HOM05D005491 ORTHO05D006973 1.5e-24 117.9 137 47.4
Haze_10762 Corylus avellana HOM05D005491 ORTHO05D006973 4.9e-23 112.8 142 53.5
Pp3c11_26760 Physcomitrium patens HOM05D005491 ORTHO05D006973 1.2e-21 108.2 137 43.8
Potri.008G008801 Populus trichocarpa HOM05D005491 ORTHO05D006973 1.2e-21 108.2 169 45.6
Cpa.g.c36201.2 Carica papaya HOM05D005491 ORTHO05D006973 4.6e-21 106.3 74 64.9
Medtr4g005800 Medicago truncatula HOM05D005491 ORTHO05D006973 1.3e-20 104.8 76 60.5
Gorai.002G157400 Gossypium raimondii HOM05D005491 ORTHO05D006973 8.6e-20 102.1 114 53.5
Gohir.D01G126833 Gossypium hirsutum HOM05D005491 ORTHO05D006973 1.1e-19 101.7 114 52.6
SEGI_08052 Sequoiadendron giganteum HOM05D005491 ORTHO05D006973 1.1e-19 101.7 115 40.9
Gohir.D06G077900 Gossypium hirsutum HOM05D005491 ORTHO05D006973 3.1e-17 93.6 109 52.3
Gorai.003G079200 Gossypium raimondii HOM05D005491 ORTHO05D006973 1.1e-14 85.1 83 56.6
Cre03.g156600 Chlamydomonas reinhardtii HOM05D005491 ORTHO05D006973 1.4e-14 84.7 255 26.3
Gorai.013G054800 Gossypium raimondii HOM05D005491 ORTHO05D006973 7.0e-14 82.4 83 55.4
CBR_g22384 Chara braunii HOM05D005491 ORTHO05D006973 1.2e-13 81.6 189 31.7
Gorai.012G122800 Gossypium raimondii HOM05D005491 ORTHO05D006973 3.5e-13 80.1 58 63.8
PRCOL_00005430 Prasinoderma coloniale HOM05D005491 ORTHO05D006973 3.5e-13 80.1 241 29.0
SEGI_00240 Sequoiadendron giganteum HOM05D005491 ORTHO05D006973 4.6e-13 79.7 120 40.8
THA.LOC104820775 Tarenaya hassleriana HOM05D006013 ORTHO05D007383 7.3e-11 72.4 250 28.4
CBR_g45943 Chara braunii HOM05D006013 ORTHO05D007383 1.6e-10 71.2 243 25.9
Nn6g35127 Nelumbo nucifera HOM05D005491 ORTHO05D006973 1.6e-10 71.2 120 43.3
Pp3c3_4160 Physcomitrium patens HOM05D006013 ORTHO05D007383 1.6e-10 71.2 233 27.0
MD14G1002900 Malus domestica HOM05D006013 ORTHO05D007383 2.8e-10 70.5 250 28.0
MELO3C008805.2 Cucumis melo HOM05D006013 ORTHO05D007383 2.3e-09 67.4 237 27.4
ATR0737G078 Amborella trichopoda HOM05D006013 ORTHO05D007383 3.1e-09 67.0 242 27.7
Prupe.7G004600 Prunus persica HOM05D006013 ORTHO05D007383 5.2e-09 66.2 313 26.2
CANSAT78G0686 Cannabis sativa HOM05D006013 ORTHO05D007383 8.9e-09 65.5 323 28.5
GSVIVG01033407001 Vitis vinifera HOM05D006013 ORTHO05D007383 8.9e-09 65.5 254 27.6
Glyma.19G112500 Glycine max HOM05D006013 ORTHO05D007383 4.4e-08 63.2 309 26.2
Lsat_1_v5_gn_1_59740 Lactuca sativa HOM05D006013 ORTHO05D007383 9.9e-08 62.0 253 27.3
QL07p018334 Quercus lobata HOM05D006013 ORTHO05D007383 9.9e-08 62.0 236 28.4
MD12G1004200 Malus domestica HOM05D006013 ORTHO05D007383 1.3e-07 61.6 244 27.9
PGSC0003DMG400033345 Solanum tuberosum HOM05D006013 ORTHO05D007383 1.7e-07 61.2 250 26.0
Solyc03g063240.3 Solanum lycopersicum HOM05D006013 ORTHO05D007383 3.7e-07 60.1 254 26.0
TPR.G5910 Trifolium pratense HOM05D006013 ORTHO05D007383 6.4e-07 59.3 311 25.1
Aqoxy2G00451 Aquilegia oxysepala HOM05D006013 ORTHO05D007383 1.1e-06 58.5 324 26.2


User provided reference genes

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