Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc04_g00320 Coffea canephora HOM05D004748 ORTHO05D005825 3.6e-283 977.6 508 100.0
Peaxi162Scf00207g01631 Petunia axillaris HOM05D004748 ORTHO05D005825 8.8e-189 664.1 404 83.7
DCAR_022622 Daucus carota HOM05D004748 ORTHO05D005825 1.0e-181 640.6 369 85.6
Solyc06g063250.3 Solanum lycopersicum HOM05D004748 ORTHO05D005825 3.0e-181 639.0 410 82.0
Migut.I01182 Erythranthe guttata HOM05D004748 ORTHO05D005825 2.6e-180 636.0 399 82.5
Sopen06g022700 Solanum pennellii HOM05D004748 ORTHO05D005825 2.6e-180 636.0 410 81.5
CSS0006652 Camellia sinensis var. sinensis HOM05D004748 ORTHO05D005825 5.7e-180 634.8 377 85.7
PGSC0003DMG400026506 Solanum tuberosum HOM05D004748 ORTHO05D005825 7.4e-180 634.4 410 82.2
Actinidia31132 Actinidia chinensis HOM05D004748 ORTHO05D005825 1.8e-178 629.8 466 73.2
CsaV3_7G033760 Cucumis sativus L. HOM05D004748 ORTHO05D005825 2.4e-178 629.4 392 81.4
Prupe.3G019200 Prunus persica HOM05D004748 ORTHO05D005825 7.0e-178 627.9 403 79.7
COL.COLO4_31191 Corchorus olitorius HOM05D004748 ORTHO05D005825 9.1e-178 627.5 395 81.0
GSVIVG01029626001 Vitis vinifera HOM05D004748 ORTHO05D005825 1.5e-177 626.7 362 85.9
AUR62001358 Chenopodium quinoa HOM05D004748 ORTHO05D005825 5.9e-177 624.8 400 79.5
Thecc.06G061000 Theobroma cacao HOM05D004748 ORTHO05D005825 5.9e-177 624.8 396 81.8
AUR62025643 Chenopodium quinoa HOM05D004748 ORTHO05D005825 1.0e-176 624.0 397 79.8
HanXRQChr10g0311461 Helianthus annuus HOM05D004748 ORTHO05D005825 1.0e-176 624.0 402 79.4
MD17G1146400 Malus domestica HOM05D004748 ORTHO05D005825 1.3e-176 623.6 356 85.7
Potri.010G251300 Populus trichocarpa HOM05D004748 ORTHO05D005825 1.3e-176 623.6 393 80.9
Manes.03G081362 Manihot esculenta HOM05D004748 ORTHO05D005825 2.9e-176 622.5 453 72.6
Gohir.D06G120700 Gossypium hirsutum HOM05D004748 ORTHO05D005825 6.5e-176 621.3 362 85.1
EL10Ac7g18182 Beta vulgaris HOM05D004748 ORTHO05D005825 8.5e-176 620.9 406 78.3
Gohir.A06G115900 Gossypium hirsutum HOM05D004748 ORTHO05D005825 1.1e-175 620.5 362 85.1
Gorai.010G141000 Gossypium raimondii HOM05D004748 ORTHO05D005825 1.4e-175 620.2 362 84.8
CiPaw.01G089000 Carya illinoinensis HOM05D004748 ORTHO05D005825 2.5e-175 619.4 365 84.1
Sabra10G0195200 Salix brachista HOM05D004748 ORTHO05D005825 3.2e-175 619.0 393 80.4
MSTRG.10889 Avicennia marina HOM05D004748 ORTHO05D005825 5.5e-175 618.2 399 80.7
THA.LOC104816897 Tarenaya hassleriana HOM05D004748 ORTHO05D005825 5.5e-175 618.2 365 83.8
MD09G1160600 Malus domestica HOM05D004748 ORTHO05D005825 2.7e-174 615.9 403 78.2
Sed0019048 Sechium edule HOM05D004748 ORTHO05D005825 3.6e-174 615.5 386 79.3
PGR102G1746 Punica granatum HOM05D004748 ORTHO05D005825 6.1e-174 614.8 357 86.6
TWI12G1435 Tripterygium wilfordii HOM05D004748 ORTHO05D005825 1.0e-173 614.0 398 78.4
TAR625G1093 Trochodendron aralioides HOM05D004748 ORTHO05D005825 3.9e-173 612.1 378 80.4
QL05p082110 Quercus lobata HOM05D004748 ORTHO05D005825 5.2e-173 611.7 373 81.5
Eucgr.F04020 Eucalyptus grandis HOM05D004748 ORTHO05D005825 6.7e-173 611.3 365 82.7
CARHR041760 Cardamine hirsuta HOM05D004748 ORTHO05D005825 1.1e-172 610.5 366 82.8
Hma1.2p1_0517F.1_g170670 Hydrangea macrophylla HOM05D004748 ORTHO05D005825 1.1e-172 610.5 340 88.5
Rhsim12G0214600 Rhododendron simsii HOM05D004748 ORTHO05D005825 1.5e-172 610.1 539 64.6
RcHm_v2.0_Chr2g0149771 Rosa chinensis HOM05D004748 ORTHO05D005825 1.5e-172 610.1 403 78.4
Cfa002138 Carpinus fangiana HOM05D004748 ORTHO05D005825 2.0e-172 609.8 393 79.6
ECA234G0898 Erigeron canadensis HOM05D004748 ORTHO05D005825 2.6e-172 609.4 366 83.9
BcaB07g33612 Brassica carinata HOM05D004748 ORTHO05D005825 9.7e-172 607.4 366 82.2
FvH4_6g37160 Fragaria vesca HOM05D004748 ORTHO05D005825 9.7e-172 607.4 360 83.6
FAN14G2305 Fragaria x ananassa HOM05D004748 ORTHO05D005825 9.7e-172 607.4 360 83.6
MBI14_g10723_MAGBIO Magnolia biondii HOM05D004748 ORTHO05D005825 1.3e-171 607.1 406 77.8
unitig_748.g7080 Utricularia gibba HOM05D006371 ORTHO05D005825 2.2e-171 606.3 349 85.1
Lalb_Chr04g0264641 Lupinus albus HOM05D004748 ORTHO05D005825 2.8e-171 605.9 397 79.1
BcaC08g43322 Brassica carinata HOM05D004748 ORTHO05D005825 3.7e-171 605.5 366 82.0
BolC6t35782H Brassica oleracea HOM05D004748 ORTHO05D005825 3.7e-171 605.5 366 82.0
Duzib192G0179 Durio zibethinus HOM05D004748 ORTHO05D005825 4.8e-171 605.1 367 83.1
FAN09G1322 Fragaria x ananassa HOM05D004748 ORTHO05D005825 6.3e-171 604.7 360 83.1
C06p06730 Brassica napus HOM05D004748 ORTHO05D005825 1.4e-170 603.6 365 81.9
Carub.0001s4046 Capsella rubella HOM05D004748 ORTHO05D005825 1.4e-170 603.6 366 81.4
CANSAT01G3164 Cannabis sativa HOM05D004748 ORTHO05D005825 2.4e-170 602.8 456 70.4
BraA06t23445Z Brassica rapa HOM05D004748 ORTHO05D005825 4.1e-170 602.1 366 81.7
FAN05G0392 Fragaria x ananassa HOM05D004748 ORTHO05D005825 4.1e-170 602.1 411 75.2
FAN05G2438 Fragaria x ananassa HOM05D004748 ORTHO05D005825 4.1e-170 602.1 411 75.2
Nn8g40686 Nelumbo nucifera HOM05D004748 ORTHO05D005825 4.1e-170 602.1 341 87.4
Ah.15g094390 Amaranthus hybridus HOM05D004748 ORTHO05D005825 5.3e-170 601.7 415 74.9
AL1G59520 Arabidopsis lyrata HOM05D004748 ORTHO05D005825 9.1e-170 600.9 366 80.9
Sp1g38250 Schrenkiella parvula HOM05D004748 ORTHO05D005825 9.1e-170 600.9 409 76.0
Aa31LG10G3160 Aethionema arabicum HOM05D004748 ORTHO05D005825 1.2e-169 600.5 391 78.0
Aqoxy7G02343 Aquilegia oxysepala HOM05D004748 ORTHO05D005825 1.2e-169 600.5 398 77.1
A06p02380 Brassica napus HOM05D004748 ORTHO05D005825 1.2e-169 600.5 359 82.7
Lj3g0017034 Lotus japonicus HOM05D004748 ORTHO05D005825 1.2e-169 600.5 383 78.6
PSO017G2012 Papaver somniferum HOM05D004748 ORTHO05D005825 5.9e-169 598.2 345 85.2
PSO170G5564 Papaver somniferum HOM05D004748 ORTHO05D005825 5.9e-169 598.2 345 85.2
Lsat_1_v5_gn_5_137380 Lactuca sativa HOM05D004748 ORTHO05D005825 7.7e-169 597.8 392 78.3
MELO3C024289.2 Cucumis melo HOM05D004748 ORTHO05D005825 1.3e-168 597.0 376 80.9
Glyma.08G222000 Glycine max HOM05D004748 ORTHO05D005825 1.3e-168 597.0 358 82.4
Os04g0298200 Oryza sativa ssp. japonica HOM05D004748 ORTHO05D005825 1.7e-168 596.7 378 79.6
ATR0580G210 Amborella trichopoda HOM05D004748 ORTHO05D005825 2.2e-168 596.3 341 85.3
Ca_20497_v3 Cicer arietinum L. HOM05D004748 ORTHO05D005825 2.2e-168 596.3 392 77.6
CDE07G1729 Ceratophyllum demersum HOM05D004748 ORTHO05D005825 1.5e-167 593.6 347 83.3
CDE04G0266 Ceratophyllum demersum HOM05D004748 ORTHO05D005825 4.2e-167 592.0 347 83.3
Hund18602 Selenicereus undatus HOM05D004748 ORTHO05D005825 2.1e-166 589.7 487 66.3
Medtr4g008150 Medicago truncatula HOM05D004748 ORTHO05D005825 6.1e-166 588.2 384 78.6
TPR.G15725 Trifolium pratense HOM05D004748 ORTHO05D005825 6.1e-166 588.2 391 77.5
AT1G51610 Arabidopsis thaliana HOM05D004748 ORTHO05D005825 1.0e-165 587.4 418 72.7
Phvul.008G254900 Phaseolus vulgaris HOM05D004748 ORTHO05D005825 4.0e-165 585.5 386 76.9
VMungo0647G1450 Vigna mungo HOM05D004748 ORTHO05D005825 8.8e-165 584.3 391 76.0
BraA05t20854Z Brassica rapa HOM05D004748 ORTHO05D005825 1.2e-164 583.9 366 79.2
BcaC08g43922 Brassica carinata HOM05D004748 ORTHO05D005825 3.3e-164 582.4 365 79.5
BolC6t36471H Brassica oleracea HOM05D004748 ORTHO05D005825 3.3e-164 582.4 365 79.5
Zm00001eb086340 Zea mays HOM05D004748 ORTHO05D005825 1.3e-163 580.5 384 77.1
BcaB02g11258 Brassica carinata HOM05D004748 ORTHO05D005825 2.2e-163 579.7 397 74.6
SGA_v2.0_scaffold71G24004 Striga asiatica HOM05D004748 ORTHO05D005825 1.1e-162 577.4 343 85.1
SHI31092 Sapria himalayana HOM05D004748 ORTHO05D005825 4.1e-162 575.5 340 83.5
HPP92_026143 Vanilla planifolia HOM05D004748 ORTHO05D005825 1.2e-161 573.9 396 73.5
arahy.Tifrunner.gnm1.ann1.660VQ8 Arachis hypogaea HOM05D004748 ORTHO05D005825 5.9e-161 571.6 367 78.7
A05p19500 Brassica napus HOM05D004748 ORTHO05D005825 8.5e-160 567.8 341 82.1
Nitab4.5_0003757g0030 Nicotiana tabacum HOM05D004748 ORTHO05D005825 1.1e-159 567.4 409 75.1
Atru.chr1.2705 Acer truncatum HOM05D004748 ORTHO05D005825 9.4e-159 564.3 365 76.2
CAN.G308.5 Capsicum annuum HOM05D004748 ORTHO05D005825 4.7e-158 562.0 312 89.7
Nitab4.5_0001691g0140 Nicotiana tabacum HOM05D004748 ORTHO05D005825 3.7e-155 552.4 361 76.5
arahy.Tifrunner.gnm1.ann1.2A2X48 Arachis hypogaea HOM05D004748 ORTHO05D005825 1.8e-154 550.1 362 77.3
Oeu001810.2 Olea europaea HOM05D004748 ORTHO05D005825 5.4e-154 548.5 320 86.2
ClCG09G001570 Citrullus lanatus HOM05D004748 ORTHO05D005825 5.5e-151 538.5 393 72.5
Lj5A24T50 Lonicera japonica HOM05D004748 ORTHO05D005825 5.5e-151 538.5 331 83.1
Lj9C541G21 Lonicera japonica HOM05D004748 ORTHO05D001811 2.1e-150 536.6 431 67.1
Ciclev10025586m.g Citrus clementina HOM05D004748 ORTHO05D005825 3.6e-150 535.8 354 77.1
Duzib235G0633 Durio zibethinus HOM05D004748 ORTHO05D005825 1.4e-149 533.9 392 71.7
Peaxi162Scf00038g02524 Petunia axillaris HOM05D004748 ORTHO05D005825 2.2e-147 526.6 312 82.1
Hund05683 Selenicereus undatus HOM05D004748 ORTHO05D005825 1.6e-145 520.4 353 72.8
Mapoly0185s0006 Marchantia polymorpha HOM05D004748 ORTHO05D005825 1.3e-144 517.3 408 65.2
AagrBONN_evm.TU.Sc2ySwM_344.1578 Anthoceros agrestis HOM05D004748 ORTHO05D005825 5.0e-144 515.4 343 72.9
SMO228G0169 Selaginella moellendorffii HOM05D004748 ORTHO05D005825 6.6e-144 515.0 340 74.7
Hma1.2p1_0517F.1_g170660 Hydrangea macrophylla HOM05D004748 ORTHO05D005825 1.7e-139 500.4 282 87.6
Nitab4.5_0012506g0020 Nicotiana tabacum HOM05D004748 ORTHO05D005825 3.7e-139 499.2 361 70.6
Nitab4.5_0002661g0120 Nicotiana tabacum HOM05D004748 ORTHO05D005825 2.4e-138 496.5 468 62.6
Psat7g261000 Pisum sativum HOM05D004748 ORTHO05D005825 4.1e-138 495.7 327 77.1
Pp3c20_1650 Physcomitrium patens HOM05D004748 ORTHO05D005825 1.1e-133 481.1 409 60.1
Dinv20350 Davidia involucrata HOM05D004748 ORTHO05D005825 4.4e-124 449.1 305 77.7
Sc12g0011080 Simmondsia chinensis HOM05D004748 ORTHO05D005825 2.9e-123 446.4 285 82.5
Glyma.07G020100 Glycine max HOM05D004748 ORTHO05D005825 6.4e-123 445.3 311 75.2
Thhalv10011469m.g Eutrema salsugineum HOM05D004748 ORTHO05D005825 3.3e-119 433.0 276 79.0
SEGI_05538 Sequoiadendron giganteum HOM05D004748 ORTHO05D005825 2.8e-118 429.9 251 84.1
Zm00001eb420390 Zea mays HOM05D004748 ORTHO05D005825 3.1e-117 426.4 250 84.4
vmacro17059 Vaccinium macrocarpon HOM05D004748 ORTHO05D005825 4.9e-99 365.9 205 90.2
Cpa.g.sc67.6 Carica papaya HOM05D004748 ORTHO05D005825 4.0e-85 319.7 224 75.0
Haze_16292 Corylus avellana HOM05D004748 ORTHO05D005825 1.1e-82 311.6 214 76.2
Cre06.g289150 Chlamydomonas reinhardtii HOM05D004748 ORTHO05D005825 5.3e-77 292.7 330 47.0
C06p13150 Brassica napus HOM05D004748 ORTHO05D005825 3.4e-76 290.0 184 78.8
MCO14G368 Micromonas commoda HOM05D004748 ORTHO05D005825 2.9e-75 287.0 335 46.9
BcaB04g17188 Brassica carinata HOM05D001232 ORTHO05D001073 1.4e-64 251.5 356 46.9
FAN02G4052 Fragaria x ananassa HOM05D004748 ORTHO05D005825 3.1e-61 240.4 143 81.1
FAN02G0724 Fragaria x ananassa HOM05D004748 ORTHO05D005825 1.5e-60 238.0 132 86.4
Haze_26513 Corylus avellana HOM05D004748 ORTHO05D005825 2.9e-59 233.8 366 35.8
Cpa.g.sc67.3 Carica papaya HOM05D004748 ORTHO05D005825 1.4e-53 214.9 121 82.6
PRCOL_00004355 Prasinoderma coloniale HOM05D004748 ORTHO05D005825 9.4e-50 202.2 372 37.6
Actinidia00640 Actinidia chinensis HOM05D004748 ORTHO05D005825 2.2e-43 181.0 107 82.2
Actinidia00641 Actinidia chinensis HOM05D004748 ORTHO05D005825 2.6e-39 167.5 109 78.9
GSVIVG01029613001 Vitis vinifera HOM05D004748 ORTHO05D005825 2.6e-31 141.0 90 78.9
CARHR041770 Cardamine hirsuta HOM05D004748 ORTHO05D005825 3.4e-31 140.6 129 59.7
FAN05G1723 Fragaria x ananassa HOM05D000043 ORTHO05D001551 4.1e-29 133.7 80 81.2
SEGI_05879 Sequoiadendron giganteum HOM05D004748 ORTHO05D002681 1.6e-28 131.7 101 65.3
Haze_16294 Corylus avellana HOM05D004748 ORTHO05D005825 6.6e-27 126.3 79 78.5
SEGI_34839 Sequoiadendron giganteum HOM05D004748 ORTHO05D005825 8.6e-27 125.9 82 73.2
Haze_16297 Corylus avellana HOM05D004748 ORTHO05D005825 1.1e-26 125.6 107 62.6
BcaC03g16763 Brassica carinata HOM05D004748 ORTHO05D005825 6.2e-25 119.8 79 73.4
C02p46400 Brassica napus HOM05D004748 ORTHO05D005825 6.2e-25 119.8 79 73.4
BolC2t10691H Brassica oleracea HOM05D004748 ORTHO05D005825 6.2e-25 119.8 79 73.4
CAN.G126.34 Capsicum annuum HOM05D004748 ORTHO05D005825 1.0e-24 119.0 125 49.6
GSVIVG01029603001 Vitis vinifera HOM05D004748 ORTHO05D005825 5.2e-24 116.7 63 88.9
A04p28800 Brassica napus HOM05D004748 ORTHO05D005825 2.6e-23 114.4 79 70.9
BraA08t33859Z Brassica rapa HOM05D004748 ORTHO05D005825 2.6e-23 114.4 79 70.9
BraA04t18357Z Brassica rapa HOM05D004748 ORTHO05D005825 9.8e-23 112.5 79 69.6
RcHm_v2.0_Chr1g0341791 Rosa chinensis HOM05D004748 ORTHO05D005825 6.0e-20 103.2 64 79.7
RcHm_v2.0_Chr7g0197681 Rosa chinensis HOM05D004748 ORTHO05D005825 2.9e-14 84.3 54 79.6
A10p03860 Brassica napus HOM05D004748 ORTHO05D005825 1.1e-13 82.4 86 53.5
arahy.Tifrunner.gnm1.ann1.W4KKVA Arachis hypogaea HOM05D005785 ORTHO05D007962 7.8e-12 76.3 44 81.8
BraA10t42660Z Brassica rapa HOM05D004748 ORTHO05D005825 3.6e-09 67.4 67 53.7
HanXRQChr12g0383231 Helianthus annuus HOM05D002835 ORTHO05D003008 1.1e-08 65.9 49 61.2
GSVIVG01029622001 Vitis vinifera HOM05D004748 ORTHO05D005825 1.1e-08 65.9 36 88.9
arahy.Tifrunner.gnm1.ann1.SQ6FML Arachis hypogaea HOM05D000121 ORTHO05D031608 3.1e-08 64.3 35 80.0
HanXRQChr10g0284771 Helianthus annuus HOM05D004748 ORTHO05D005825 3.1e-08 64.3 35 85.7
SEGI_11704 Sequoiadendron giganteum HOM05D004748 ORTHO05D006250 3.1e-08 64.3 37 78.4
FAN03G2435 Fragaria x ananassa HOM05D000153 ORTHO05D000118 5.2e-08 63.5 36 80.6


User provided reference genes

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