Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc04_g00230 Coffea canephora HOM05D004945 ORTHO05D005536 5.5e-46 187.2 89 100.0
DCAR_007670 Daucus carota HOM05D004945 ORTHO05D005536 2.0e-35 152.1 89 77.5
TAR625G1304 Trochodendron aralioides HOM05D004945 ORTHO05D005536 4.4e-35 151.0 87 75.9
TWI63G0641 Tripterygium wilfordii HOM05D004945 ORTHO05D005536 9.7e-35 149.8 87 75.9
Actinidia38805 Actinidia chinensis HOM05D004945 ORTHO05D005536 2.8e-34 148.3 87 72.4
Thecc.09G185900 Theobroma cacao HOM05D004945 ORTHO05D005536 2.8e-34 148.3 87 75.9
Duzib150G0603 Durio zibethinus HOM05D004945 ORTHO05D005536 3.7e-34 147.9 87 72.4
CSS0028266 Camellia sinensis var. sinensis HOM05D004945 ORTHO05D005536 4.8e-34 147.5 87 72.4
CiPaw.10G063900 Carya illinoinensis HOM05D004945 ORTHO05D005536 6.3e-34 147.1 87 74.7
TAR636G3350 Trochodendron aralioides HOM05D004945 ORTHO05D005536 8.2e-34 146.7 87 73.6
Cpa.g.sc95.12 Carica papaya HOM05D004945 ORTHO05D005536 1.1e-33 146.4 87 74.7
PGSC0003DMG400026503 Solanum tuberosum HOM05D004945 ORTHO05D005536 1.4e-33 146.0 87 73.6
CiPaw.09G075900 Carya illinoinensis HOM05D004945 ORTHO05D005536 1.8e-33 145.6 87 73.6
COL.COLO4_22793 Corchorus olitorius HOM05D004945 ORTHO05D005536 2.4e-33 145.2 87 72.4
Nitab4.5_0003757g0090 Nicotiana tabacum HOM05D004945 ORTHO05D005536 2.4e-33 145.2 83 77.1
Prupe.1G075600 Prunus persica HOM05D004945 ORTHO05D005536 3.1e-33 144.8 87 74.7
PGR142G1282 Punica granatum HOM05D004945 ORTHO05D005536 4.1e-33 144.4 87 72.4
Atru.chr7.757 Acer truncatum HOM05D004945 ORTHO05D005536 5.3e-33 144.1 89 71.9
Atru.chr7.779 Acer truncatum HOM05D004945 ORTHO05D005536 5.3e-33 144.1 89 71.9
COL.COLO4_08559 Corchorus olitorius HOM05D004945 ORTHO05D005536 5.3e-33 144.1 87 71.3
CAN.G308.14 Capsicum annuum HOM05D004945 ORTHO05D005536 1.2e-32 142.9 83 77.1
Ciclev10010043m.g Citrus clementina HOM05D004945 ORTHO05D005536 1.2e-32 142.9 87 73.6
MD07G1027600 Malus domestica HOM05D004945 ORTHO05D005536 1.2e-32 142.9 87 75.9
Gohir.D13G212800 Gossypium hirsutum HOM05D004945 ORTHO05D005536 1.6e-32 142.5 87 72.4
Gorai.013G243200 Gossypium raimondii HOM05D004945 ORTHO05D005536 1.6e-32 142.5 87 72.4
Duzib150G1578 Durio zibethinus HOM05D004945 ORTHO05D005536 2.0e-32 142.1 87 71.3
Gohir.A13G208400 Gossypium hirsutum HOM05D004945 ORTHO05D005536 4.5e-32 141.0 87 71.3
ClCG06G013580 Citrullus lanatus HOM05D004945 ORTHO05D005536 5.9e-32 140.6 87 72.4
Hma1.2p1_0517F.1_g170730 Hydrangea macrophylla HOM05D004945 ORTHO05D005536 1.0e-31 139.8 87 72.4
QL11p014429 Quercus lobata HOM05D004945 ORTHO05D005536 1.0e-31 139.8 87 72.4
Haze_06091 Corylus avellana HOM05D004945 ORTHO05D005536 1.3e-31 139.4 87 73.6
Gohir.A13G208500 Gossypium hirsutum HOM05D004945 ORTHO05D005536 1.3e-31 139.4 87 69.0
MD13G1241900 Malus domestica HOM05D004945 ORTHO05D005536 1.3e-31 139.4 87 74.7
QL11p013920 Quercus lobata HOM05D004945 ORTHO05D005536 1.3e-31 139.4 87 71.3
TWI34G0510 Tripterygium wilfordii HOM05D004945 ORTHO05D005536 1.3e-31 139.4 87 70.1
Rhsim08G0249700 Rhododendron simsii HOM05D004945 ORTHO05D005536 1.7e-31 139.0 88 71.6
Gorai.004G025200 Gossypium raimondii HOM05D004945 ORTHO05D005536 2.2e-31 138.7 87 69.0
Manes.06G020000 Manihot esculenta HOM05D004945 ORTHO05D005536 2.2e-31 138.7 87 69.0
Sc12g0011140 Simmondsia chinensis HOM05D004945 ORTHO05D005536 2.2e-31 138.7 88 72.7
Gohir.D08G028100 Gossypium hirsutum HOM05D004945 ORTHO05D005536 2.9e-31 138.3 87 69.0
Gohir.D13G212900 Gossypium hirsutum HOM05D004945 ORTHO05D005536 2.9e-31 138.3 87 67.8
Solyc06g063310.2 Solanum lycopersicum HOM05D004945 ORTHO05D005536 2.9e-31 138.3 87 71.3
Sopen06g022780 Solanum pennellii HOM05D004945 ORTHO05D005536 2.9e-31 138.3 87 71.3
MELO3C017430.2 Cucumis melo HOM05D004945 ORTHO05D005536 6.5e-31 137.1 87 70.1
ATR0626G412 Amborella trichopoda HOM05D004945 ORTHO05D005536 8.5e-31 136.7 87 69.0
Potri.006G075600 Populus trichocarpa HOM05D004945 ORTHO05D005536 8.5e-31 136.7 87 67.8
Sc15g0001010 Simmondsia chinensis HOM05D004945 ORTHO05D005536 1.1e-30 136.3 88 69.3
Eucgr.C00118 Eucalyptus grandis HOM05D004945 ORTHO05D005536 1.5e-30 136.0 87 66.7
Potri.018G142500 Populus trichocarpa HOM05D004945 ORTHO05D005536 1.5e-30 136.0 87 67.8
Sabra18G0116400 Salix brachista HOM05D004945 ORTHO05D005536 2.5e-30 135.2 87 66.7
Sed0015624 Sechium edule HOM05D004945 ORTHO05D005536 2.5e-30 135.2 87 71.3
Hma1.2p1_1111F.1_g258380 Hydrangea macrophylla HOM05D004945 ORTHO05D005536 4.2e-30 134.4 88 69.3
Sed0005101 Sechium edule HOM05D004945 ORTHO05D005536 7.2e-30 133.7 87 70.1
CANSAT11G0762 Cannabis sativa HOM05D004945 ORTHO05D005536 9.4e-30 133.3 87 69.0
CsaV3_1G031860 Cucumis sativus L. HOM05D004945 ORTHO05D005536 9.4e-30 133.3 87 69.0
PSO063G0987 Papaver somniferum HOM05D004945 ORTHO05D005536 9.4e-30 133.3 88 70.5
Aqoxy1G01195 Aquilegia oxysepala HOM05D004945 ORTHO05D005536 1.2e-29 132.9 87 67.8
CDE04G2745 Ceratophyllum demersum HOM05D004945 ORTHO05D005536 2.1e-29 132.1 82 72.0
PSO170G0997 Papaver somniferum HOM05D004945 ORTHO05D005536 2.1e-29 132.1 88 69.3
THA.LOC104803956 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 2.1e-29 132.1 87 69.0
THA.LOC104803979 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 2.1e-29 132.1 87 69.0
Migut.D00890 Erythranthe guttata HOM05D004945 ORTHO05D005536 2.7e-29 131.7 87 64.4
Migut.I01191 Erythranthe guttata HOM05D004945 ORTHO05D005536 2.7e-29 131.7 87 70.1
Gohir.A08G017500 Gossypium hirsutum HOM05D004945 ORTHO05D005536 6.1e-29 130.6 87 65.5
unitig_748.g8030 Utricularia gibba HOM05D004945 ORTHO05D005536 1.0e-28 129.8 88 68.2
Glyma.15G165900 Glycine max HOM05D004945 ORTHO05D005536 1.4e-28 129.4 90 65.6
RcHm_v2.0_Chr4g0399651 Rosa chinensis HOM05D004945 ORTHO05D005536 1.8e-28 129.0 81 70.4
THA.LOC104820006 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 2.3e-28 128.6 87 66.7
Lsat_1_v5_gn_1_39460 Lactuca sativa HOM05D004945 ORTHO05D005536 3.0e-28 128.3 87 64.4
Psat1g144160 Pisum sativum HOM05D004945 ORTHO05D005536 4.0e-28 127.9 89 65.2
Ah.13g075140 Amaranthus hybridus HOM05D004945 ORTHO05D005536 5.2e-28 127.5 82 69.5
Phvul.007G156600 Phaseolus vulgaris HOM05D004945 ORTHO05D005536 5.2e-28 127.5 89 61.8
Ca_02105_v3 Cicer arietinum L. HOM05D004945 ORTHO05D005536 8.8e-28 126.7 89 64.0
QL11p013931 Quercus lobata HOM05D004945 ORTHO05D005536 8.8e-28 126.7 87 66.7
BcaB03g12628 Brassica carinata HOM05D004945 ORTHO05D005536 1.2e-27 126.3 87 65.5
Glyma.09G059600 Glycine max HOM05D004945 ORTHO05D005536 1.5e-27 125.9 90 64.4
SHI03058 Sapria himalayana HOM05D004945 ORTHO05D005536 1.5e-27 125.9 87 63.2
FvH4_4g07310 Fragaria vesca HOM05D004945 ORTHO05D005536 2.6e-27 125.2 81 64.2
TPR.G7575 Trifolium pratense HOM05D004945 ORTHO05D005536 2.6e-27 125.2 89 64.0
unitig_32.g11008 Utricularia gibba HOM05D004945 ORTHO05D005536 2.6e-27 125.2 82 67.1
THA.LOC104814658 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 3.3e-27 124.8 87 65.5
BcaC01g01207 Brassica carinata HOM05D004945 ORTHO05D005536 5.7e-27 124.0 87 64.4
A08p19460 Brassica napus HOM05D004945 ORTHO05D005536 5.7e-27 124.0 87 64.4
C03p88960 Brassica napus HOM05D004945 ORTHO05D005536 5.7e-27 124.0 87 64.4
BolC3t21206H Brassica oleracea HOM05D004945 ORTHO05D005536 5.7e-27 124.0 87 64.4
BraA08t33908Z Brassica rapa HOM05D004945 ORTHO05D005536 5.7e-27 124.0 87 64.4
QL11p014451 Quercus lobata HOM05D004945 ORTHO05D005536 7.5e-27 123.6 87 65.5
Sp7g27810 Schrenkiella parvula HOM05D004945 ORTHO05D005536 9.7e-27 123.2 87 63.2
CARHR237930 Cardamine hirsuta HOM05D004945 ORTHO05D005536 1.7e-26 122.5 87 63.2
Medtr2g037990 Medicago truncatula HOM05D004945 ORTHO05D005536 1.7e-26 122.5 89 61.8
FAN07G0945 Fragaria x ananassa HOM05D004945 ORTHO05D005536 2.2e-26 122.1 81 63.0
Ah.04g153390 Amaranthus hybridus HOM05D004945 ORTHO05D005536 2.8e-26 121.7 82 64.6
EL10Ac3g07227 Beta vulgaris HOM05D004945 ORTHO05D005536 3.7e-26 121.3 82 63.4
arahy.Tifrunner.gnm1.ann1.M8DR4H Arachis hypogaea HOM05D004945 ORTHO05D005536 4.8e-26 120.9 98 58.2
Thhalv10026677m.g Eutrema salsugineum HOM05D004945 ORTHO05D005536 6.3e-26 120.6 87 62.1
AL7G22230 Arabidopsis lyrata HOM05D004945 ORTHO05D005536 8.3e-26 120.2 87 62.1
arahy.Tifrunner.gnm1.ann1.ZYC9F0 Arachis hypogaea HOM05D004945 ORTHO05D005536 8.3e-26 120.2 83 62.7
A03p59370 Brassica napus HOM05D004945 ORTHO05D005536 8.3e-26 120.2 87 63.2
C07p57400 Brassica napus HOM05D004945 ORTHO05D005536 8.3e-26 120.2 87 63.2
BolC7t46209H Brassica oleracea HOM05D004945 ORTHO05D005536 8.3e-26 120.2 87 63.2
BraA03t14994Z Brassica rapa HOM05D004945 ORTHO05D005536 8.3e-26 120.2 87 63.2
BcaNung00508 Brassica carinata HOM05D004945 ORTHO05D005536 1.4e-25 119.4 87 62.1
Carub.0007s1064 Capsella rubella HOM05D004945 ORTHO05D005536 1.4e-25 119.4 87 60.9
ECA247G2100 Erigeron canadensis HOM05D004945 ORTHO05D005536 1.4e-25 119.4 88 67.0
Lalb_Chr11g0074741 Lupinus albus HOM05D004945 ORTHO05D005536 2.4e-25 118.6 89 58.4
AT4G30010 Arabidopsis thaliana HOM05D004945 ORTHO05D005536 3.1e-25 118.2 87 59.8
AUR62018340 Chenopodium quinoa HOM05D004945 ORTHO05D005536 3.1e-25 118.2 82 63.4
AUR62031980 Chenopodium quinoa HOM05D004945 ORTHO05D005536 3.1e-25 118.2 82 63.4
AUR62044702 Chenopodium quinoa HOM05D004945 ORTHO05D005536 3.1e-25 118.2 82 63.4
AUR62044703 Chenopodium quinoa HOM05D004945 ORTHO05D005536 3.1e-25 118.2 82 63.4
Lj6g0012502 Lotus japonicus HOM05D004945 ORTHO05D005536 3.1e-25 118.2 90 61.1
Psat1g144120 Pisum sativum HOM05D004945 ORTHO05D005536 3.1e-25 118.2 89 61.8
Aa31LG2G20550 Aethionema arabicum HOM05D004945 ORTHO05D005536 4.1e-25 117.9 87 62.1
AUR62030327 Chenopodium quinoa HOM05D004945 ORTHO05D005536 4.1e-25 117.9 85 62.4
Aqoxy7G02794 Aquilegia oxysepala HOM05D004945 ORTHO05D005536 7.0e-25 117.1 88 61.4
AUR62023991 Chenopodium quinoa HOM05D004945 ORTHO05D005536 3.5e-24 114.8 82 61.0
THA.LOC104811777 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 3.8e-23 111.3 87 59.8
Dinv25512 Davidia involucrata HOM05D004945 ORTHO05D005536 4.2e-22 107.8 61 72.1
MD10G1108200 Malus domestica HOM05D004945 ORTHO05D005536 4.2e-22 107.8 84 61.9
THA.LOC109116878 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 2.3e-20 102.1 58 75.9
A01p08110 Brassica napus HOM05D004945 ORTHO05D005536 3.7e-18 94.7 80 53.8
Nitab4.5_0000617g0120 Nicotiana tabacum HOM05D004945 ORTHO05D005536 8.3e-18 93.6 67 62.7
BcaB03g15243 Brassica carinata HOM05D004945 ORTHO05D005536 9.1e-17 90.1 75 56.0
Nitab4.5_0006750g0010 Nicotiana tabacum HOM05D004945 ORTHO05D005536 1.6e-16 89.4 57 71.9
PGSC0003DMG400028757 Solanum tuberosum HOM05D004945 ORTHO05D005536 1.0e-15 86.7 58 62.1
HanXRQChr15g0497481 Helianthus annuus HOM05D004945 ORTHO05D005536 1.1e-14 83.2 59 61.0
Os02g0175800 Oryza sativa ssp. japonica HOM05D004945 ORTHO05D005536 1.9e-14 82.4 96 43.8
SMO361G0023 Selaginella moellendorffii HOM05D004945 ORTHO05D005536 5.5e-14 80.9 82 47.6
Nitab4.5_0002354g0060 Nicotiana tabacum HOM05D004945 ORTHO05D005536 6.8e-12 73.9 45 68.9
arahy.Tifrunner.gnm1.ann1.2FH55K Arachis hypogaea HOM05D004945 ORTHO05D005536 8.9e-12 73.6 56 55.4
arahy.Tifrunner.gnm1.ann1.U71V3Q Arachis hypogaea HOM05D004945 ORTHO05D005536 8.9e-12 73.6 56 55.4
GSVIVG01010862001 Vitis vinifera HOM05D004945 ORTHO05D005536 1.2e-11 73.2 56 58.9
Nn8g40786 Nelumbo nucifera HOM05D004945 ORTHO05D005536 1.1e-09 66.6 44 61.4
Oeu001819.1 Olea europaea HOM05D004945 ORTHO05D005536 1.4e-09 66.2 75 44.0
AagrBONN_evm.TU.Sc2ySwM_344.4974 Anthoceros agrestis HOM05D004945 ORTHO05D005536 1.3e-07 59.7 82 35.4
Pp3c5_15650 Physcomitrium patens HOM05D004945 ORTHO05D005536 1.3e-07 59.7 85 36.5
Pp3c25_5460 Physcomitrium patens HOM05D004945 ORTHO05D005536 2.3e-07 58.9 86 38.4
CBR_g50842 Chara braunii HOM05D004945 ORTHO05D005536 3.9e-07 58.2 83 36.1
MCO09G227 Micromonas commoda HOM05D004945 ORTHO05D005536 5.0e-07 57.8 87 36.8
Dinv24096 Davidia involucrata HOM05D019947 ORTHO05D005536 1.1e-06 56.6 43 53.5
Dinv44937 Davidia involucrata HOM05D004945 ORTHO05D005536 1.1e-06 56.6 43 53.5
Pp3c5_15280 Physcomitrium patens HOM05D004945 ORTHO05D005536 4.3e-06 54.7 78 30.8
BcaC09g51779 Brassica carinata HOM05D004945 ORTHO05D005536 9.5e-06 53.5 71 36.6
BcaNung06654 Brassica carinata HOM05D004945 ORTHO05D005536 9.5e-06 53.5 71 36.6


User provided reference genes

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