Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc04_g00200 Coffea canephora HOM05D004479 ORTHO05D005597 1.7e-281 972.2 577 100.0
Actinidia21882 Actinidia chinensis HOM05D004479 ORTHO05D005597 1.4e-206 723.4 541 77.1
MSTRG.10879 Avicennia marina HOM05D004479 ORTHO05D005597 5.4e-203 711.4 535 77.6
Dinv09182 Davidia involucrata HOM05D004479 ORTHO05D005597 1.6e-202 709.9 542 77.1
Nitab4.5_0004918g0010 Nicotiana tabacum HOM05D004479 ORTHO05D005597 5.6e-192 674.9 543 75.9
Solyc03g123960.3 Solanum lycopersicum HOM05D004479 ORTHO05D005597 2.8e-191 672.5 542 74.7
HanXRQChr12g0359691 Helianthus annuus HOM05D004479 ORTHO05D005597 1.8e-190 669.8 533 73.7
Nitab4.5_0002664g0040 Nicotiana tabacum HOM05D004479 ORTHO05D005597 4.5e-189 665.2 559 73.7
TAR626G0959 Trochodendron aralioides HOM05D004479 ORTHO05D005597 2.9e-188 662.5 557 72.7
Migut.I01194 Erythranthe guttata HOM05D004479 ORTHO05D005597 1.4e-187 660.2 538 73.0
GSVIVG01029540001 Vitis vinifera HOM05D004479 ORTHO05D005597 9.3e-187 657.5 539 73.1
Sopen03g041690 Solanum pennellii HOM05D004479 ORTHO05D005597 4.6e-186 655.2 574 70.9
Prupe.1G049400 Prunus persica HOM05D004479 ORTHO05D005597 1.1e-184 650.6 542 73.1
CSS0019442 Camellia sinensis var. sinensis HOM05D004479 ORTHO05D005597 2.8e-183 646.0 540 73.9
CAN.G790.12 Capsicum annuum HOM05D004479 ORTHO05D005597 5.3e-182 641.7 546 72.5
Ciclev10025265m.g Citrus clementina HOM05D004479 ORTHO05D005597 7.6e-181 637.9 546 70.9
Gohir.A01G221776 Gossypium hirsutum HOM05D004479 ORTHO05D005597 1.0e-180 637.5 552 72.5
QL05p084035 Quercus lobata HOM05D004479 ORTHO05D005597 4.9e-180 635.2 564 69.5
RcHm_v2.0_Chr4g0395701 Rosa chinensis HOM05D004479 ORTHO05D005597 1.8e-177 626.7 541 70.6
Manes.06G177300 Manihot esculenta HOM05D004479 ORTHO05D005597 5.1e-177 625.2 546 71.2
Gorai.010G142700 Gossypium raimondii HOM05D004479 ORTHO05D005597 8.2e-175 617.8 553 71.2
Nn7g37005 Nelumbo nucifera HOM05D004479 ORTHO05D005597 8.2e-175 617.8 546 71.4
Potri.010G253100 Populus trichocarpa HOM05D004479 ORTHO05D005597 4.1e-174 615.5 540 68.7
Rhsim08G0249800 Rhododendron simsii HOM05D004479 ORTHO05D005597 4.5e-173 612.1 539 70.3
MD16G1227300 Malus domestica HOM05D004479 ORTHO05D005597 1.3e-172 610.5 540 68.9
CANSAT78G0411 Cannabis sativa HOM05D004479 ORTHO05D005597 6.5e-172 608.2 540 69.8
Lsat_1_v5_gn_5_137281 Lactuca sativa HOM05D004479 ORTHO05D005597 6.5e-172 608.2 510 72.9
Oeu049641.1 Olea europaea HOM05D004479 ORTHO05D005597 3.6e-170 602.4 570 63.2
ECA234G3188 Erigeron canadensis HOM05D001810 ORTHO05D005662 1.5e-165 587.0 495 68.9
Peaxi162Scf00038g02656 Petunia axillaris HOM05D004479 ORTHO05D005597 5.9e-165 585.1 534 64.2
COL.COLO4_31168 Corchorus olitorius HOM05D004479 ORTHO05D005597 2.2e-164 583.2 532 69.0
Hma1.2p1_1111F.1_g258400 Hydrangea macrophylla HOM05D004479 ORTHO05D005597 2.9e-164 582.8 467 75.6
CsaV3_3G030520 Cucumis sativus L. HOM05D004479 ORTHO05D005597 6.5e-164 581.6 549 64.8
FvH4_4g04880 Fragaria vesca HOM05D004479 ORTHO05D005597 3.2e-163 579.3 541 67.3
Atru.chr1.2695 Acer truncatum HOM05D004479 ORTHO05D005597 4.2e-163 578.9 547 66.4
MELO3C026710.2 Cucumis melo HOM05D004479 ORTHO05D005597 2.1e-162 576.6 544 66.0
EL10Ac7g18162 Beta vulgaris HOM05D004479 ORTHO05D005597 1.0e-161 574.3 491 68.4
Duzib192G0061 Durio zibethinus HOM05D004479 ORTHO05D005597 1.0e-161 574.3 539 67.2
vmacro18747 Vaccinium macrocarpon HOM05D004479 ORTHO05D005597 1.0e-161 574.3 582 60.1
Nitab4.5_0005664g0060 Nicotiana tabacum HOM05D004479 ORTHO05D005597 3.0e-161 572.8 529 63.3
Glyma.12G188300 Glycine max HOM05D004479 ORTHO05D005597 5.1e-161 572.0 539 66.4
arahy.Tifrunner.gnm1.ann1.HYUF3S Arachis hypogaea HOM05D004479 ORTHO05D005597 1.3e-159 567.4 542 67.9
arahy.Tifrunner.gnm1.ann1.SFLF9H Arachis hypogaea HOM05D004479 ORTHO05D005597 1.3e-159 567.4 542 67.9
Thecc.06G058800 Theobroma cacao HOM05D004479 ORTHO05D005597 2.2e-159 566.6 551 65.7
FAN17G0751 Fragaria x ananassa HOM05D004479 ORTHO05D005597 6.3e-159 565.1 548 63.3
TPR.G5557 Trifolium pratense HOM05D004479 ORTHO05D005597 6.3e-159 565.1 544 66.7
Medtr5g013930 Medicago truncatula HOM05D004479 ORTHO05D005597 1.8e-158 563.5 551 64.1
RcHm_v2.0_Chr4g0395721 Rosa chinensis HOM05D004479 ORTHO05D005597 2.4e-158 563.1 484 71.9
SalBow6G0079 Salvia bowleyana HOM05D004479 ORTHO05D005597 2.4e-158 563.1 558 60.2
PGR119G2289 Punica granatum HOM05D004479 ORTHO05D005597 3.4e-157 559.3 550 66.2
VMungo1080G0276 Vigna mungo HOM05D004479 ORTHO05D005597 1.3e-156 557.4 544 67.1
Sabra10G0196900 Salix brachista HOM05D004479 ORTHO05D005597 1.9e-155 553.5 647 56.7
FAN22G0181 Fragaria x ananassa HOM05D004479 ORTHO05D005597 2.5e-155 553.1 497 67.8
Hund18609 Selenicereus undatus HOM05D004479 ORTHO05D005597 2.5e-155 553.1 547 62.5
Phvul.005G185100 Phaseolus vulgaris HOM05D004479 ORTHO05D005597 9.4e-155 551.2 546 66.3
unitig_748.g8028 Utricularia gibba HOM05D004479 ORTHO05D005597 9.4e-155 551.2 568 60.2
Ca_21726_v3 Cicer arietinum L. HOM05D004479 ORTHO05D005597 2.7e-154 549.7 542 64.9
Gohir.A06G118600 Gossypium hirsutum HOM05D004479 ORTHO05D005597 4.7e-154 548.9 562 64.6
THA.LOC104800314 Tarenaya hassleriana HOM05D004479 ORTHO05D005597 1.8e-153 547.0 554 61.9
ClCG07G014640 Citrullus lanatus HOM05D004479 ORTHO05D005597 1.5e-152 543.9 553 61.8
TWI09G1491 Tripterygium wilfordii HOM05D004479 ORTHO05D005597 1.5e-152 543.9 488 67.2
Eucgr.J03177 Eucalyptus grandis HOM05D004479 ORTHO05D005597 2.0e-152 543.5 548 62.6
Aqoxy7G02788 Aquilegia oxysepala HOM05D004479 ORTHO05D005597 1.2e-149 534.3 566 62.9
Ah.15g094320 Amaranthus hybridus HOM05D004479 ORTHO05D005597 8.8e-145 518.1 535 63.0
MBI13_g34036_MAGBIO Magnolia biondii HOM05D004479 ORTHO05D005597 4.4e-144 515.8 479 68.7
Sed0022371 Sechium edule HOM05D004479 ORTHO05D005597 5.7e-144 515.4 547 61.1
Sc12g0011150 Simmondsia chinensis HOM05D004479 ORTHO05D005597 5.7e-144 515.4 536 61.8
PSO170G2367 Papaver somniferum HOM05D004479 ORTHO05D005597 1.8e-142 510.4 574 59.8
Cfa002151 Carpinus fangiana HOM05D004479 ORTHO05D005597 2.0e-141 506.9 488 66.6
Sp2g14070 Schrenkiella parvula HOM05D004479 ORTHO05D005597 6.5e-140 501.9 537 60.7
Lj6C65T2 Lonicera japonica HOM05D004479 ORTHO05D005597 8.5e-140 501.5 369 79.9
MBI13_g01743_MAGBIO Magnolia biondii HOM05D004479 ORTHO05D005597 8.5e-140 501.5 480 67.1
HPP92_008247 Vanilla planifolia HOM05D004479 ORTHO05D005597 2.1e-138 496.9 537 59.0
Aa31LG2G7330 Aethionema arabicum HOM05D004479 ORTHO05D005597 2.7e-138 496.5 517 60.0
Zm00001eb320420 Zea mays HOM05D004479 ORTHO05D005597 2.3e-137 493.4 536 57.3
PSO384G0383 Papaver somniferum HOM05D004479 ORTHO05D005597 5.2e-137 492.3 565 59.3
AUR62001343 Chenopodium quinoa HOM05D004479 ORTHO05D005597 9.8e-136 488.0 537 56.8
ATR0626G211 Amborella trichopoda HOM05D004479 ORTHO05D005597 1.1e-134 484.6 527 57.3
PSO063G0217 Papaver somniferum HOM05D004479 ORTHO05D005597 1.8e-134 483.8 579 57.7
Hund18598 Selenicereus undatus HOM05D004479 ORTHO05D005597 1.8e-134 483.8 472 64.4
CARHR213680 Cardamine hirsuta HOM05D004479 ORTHO05D005597 2.4e-134 483.4 542 60.1
Lj3g0018425 Lotus japonicus HOM05D004479 ORTHO05D005597 5.4e-134 482.3 503 63.8
SGA_v2.0_scaffold122G33268 Striga asiatica HOM05D004479 ORTHO05D005597 7.2e-131 471.9 540 59.6
Psat5g288040 Pisum sativum HOM05D004479 ORTHO05D005597 3.0e-129 466.5 445 67.6
PGSC0003DMG400009164 Solanum tuberosum HOM05D004479 ORTHO05D005597 5.7e-128 462.2 357 77.3
AT2G03070 Arabidopsis thaliana HOM05D004479 ORTHO05D005597 6.3e-127 458.8 537 58.1
CDE02G4004 Ceratophyllum demersum HOM05D004479 ORTHO05D005597 2.3e-124 450.3 539 54.7
DCAR_030619 Daucus carota HOM05D004479 ORTHO05D005597 4.7e-122 442.6 342 72.8
Glyma.13G372700 Glycine max HOM05D004479 ORTHO05D005597 6.8e-121 438.7 446 65.7
Gohir.D06G122500 Gossypium hirsutum HOM05D004479 ORTHO05D005597 6.8e-121 438.7 427 68.1
BcaC04g21507 Brassica carinata HOM05D004479 ORTHO05D005597 7.5e-120 435.3 533 57.4
BraA09t38008Z Brassica rapa HOM05D004479 ORTHO05D005597 1.7e-119 434.1 536 59.0
A09p24080 Brassica napus HOM05D004479 ORTHO05D005597 2.9e-119 433.3 535 58.7
C09p30960 Brassica napus HOM05D004479 ORTHO05D005597 6.4e-119 432.2 533 57.2
BolC9t55955H Brassica oleracea HOM05D004479 ORTHO05D005597 6.4e-119 432.2 533 57.2
Carub.0005s0192 Capsella rubella HOM05D004479 ORTHO05D005597 2.4e-118 430.3 536 55.8
AUR62025661 Chenopodium quinoa HOM05D004479 ORTHO05D005597 7.0e-118 428.7 488 55.7
BcaB07g30687 Brassica carinata HOM05D004479 ORTHO05D005597 4.6e-117 426.0 508 59.8
Ca_04816_v3 Cicer arietinum L. HOM05D004479 ORTHO05D005597 8.6e-116 421.8 537 55.9
Thhalv10004003m.g Eutrema salsugineum HOM05D004479 ORTHO05D005597 2.3e-113 413.7 531 54.2
AL5G12650 Arabidopsis lyrata HOM05D004479 ORTHO05D005597 2.3e-108 397.1 532 53.8
Dinv37782 Davidia involucrata HOM05D004479 ORTHO05D005597 1.3e-103 381.3 350 70.9
Dinv37783 Davidia involucrata HOM05D004479 ORTHO05D005597 4.7e-90 336.3 192 90.1
PSO836G0001 Papaver somniferum HOM05D004479 ORTHO05D005597 2.9e-87 327.0 486 52.1
Os03g0423800 Oryza sativa ssp. japonica HOM05D004479 ORTHO05D005597 4.3e-83 313.2 232 71.1
Haze_16264 Corylus avellana HOM05D004479 ORTHO05D005597 2.0e-80 304.3 194 80.9
Cpa.g.sc1515.2 Carica papaya HOM05D004479 ORTHO05D005597 5.1e-76 289.7 201 73.6
BraA06t27217Z Brassica rapa HOM05D004479 ORTHO05D005597 4.0e-65 253.4 233 58.4
BolC7t43874H Brassica oleracea HOM05D004479 ORTHO05D005597 2.5e-62 244.2 224 59.8
BcaC06g31203 Brassica carinata HOM05D004479 ORTHO05D005597 5.5e-62 243.0 225 58.2
BcaC06g34021 Brassica carinata HOM05D004479 ORTHO05D005597 3.5e-61 240.4 211 60.7
Pp3c18_4030 Physcomitrium patens HOM05D004479 ORTHO05D005597 1.6e-58 231.5 306 45.8
Oeu062492.1 Olea europaea HOM05D004479 ORTHO05D005597 3.7e-58 230.3 214 58.9
A06p43310 Brassica napus HOM05D004479 ORTHO05D005597 6.3e-58 229.6 264 50.0
Mapoly0029s0023 Marchantia polymorpha HOM05D004479 ORTHO05D005597 1.1e-54 218.8 308 43.5
Psat1g118080 Pisum sativum HOM05D004479 ORTHO05D005597 4.2e-46 190.3 168 64.9
CiPaw.01G090700 Carya illinoinensis HOM05D004479 ORTHO05D005597 1.8e-44 184.9 220 55.9
C07p33640 Brassica napus HOM05D004479 ORTHO05D005597 3.9e-44 183.7 224 50.9
AagrBONN_evm.TU.Sc2ySwM_117.2251 Anthoceros agrestis HOM05D004479 ORTHO05D005597 1.7e-42 178.3 203 48.3
Aqoxy377s002 Aquilegia oxysepala HOM05D004479 ORTHO05D005597 4.8e-42 176.8 183 62.8
SMO114G0145 Selaginella moellendorffii HOM05D004479 ORTHO05D005597 2.4e-41 174.5 194 51.0
AagrBONN_evm.TU.Sc2ySwM_117.1357 Anthoceros agrestis HOM05D004479 ORTHO05D005597 2.9e-39 167.5 242 42.1
CBR_g41305 Chara braunii HOM05D004479 ORTHO05D005597 2.3e-36 157.9 290 38.6
CARHR145470 Cardamine hirsuta HOM05D004479 ORTHO05D005597 1.5e-30 138.7 105 69.5
SEGI_11469 Sequoiadendron giganteum HOM05D004479 ORTHO05D005597 2.1e-29 134.8 118 56.8
COL.COLO4_31578 Corchorus olitorius HOM05D001810 ORTHO05D005662 1.0e-28 132.5 194 47.9
DCAR_030620 Daucus carota HOM05D004479 ORTHO05D005597 7.5e-27 126.3 99 71.7
Psat0s1762g0040 Pisum sativum HOM05D004479 ORTHO05D005597 6.3e-26 123.2 197 45.2
Actinidia21652 Actinidia chinensis HOM05D004479 ORTHO05D005597 7.0e-25 119.8 65 87.7
Psat0s1227g0080 Pisum sativum HOM05D000020 ORTHO05D015801 3.8e-23 114.0 179 54.2
Cpa.g.sc155.18 Carica papaya HOM05D004479 ORTHO05D005597 9.4e-22 109.4 103 66.0
QL03p033126 Quercus lobata HOM05D004479 ORTHO05D005597 4.7e-21 107.1 69 82.6
SEGI_18721 Sequoiadendron giganteum HOM05D004479 ORTHO05D005597 1.3e-18 99.0 91 57.1
SHI42840 Sapria himalayana HOM05D004479 ORTHO05D005597 8.3e-18 96.3 133 45.9
Nitab4.5_0005739g0060 Nicotiana tabacum HOM05D004479 ORTHO05D029161 7.0e-17 93.2 100 58.0
Cpa.g.sc1515.1 Carica papaya HOM05D004479 ORTHO05D005597 1.2e-16 92.4 108 74.1
SHI42601 Sapria himalayana HOM05D004479 ORTHO05D005597 2.0e-16 91.7 152 40.1
QL05p046913 Quercus lobata HOM05D004479 ORTHO05D005597 4.2e-14 84.0 162 48.1
SHI24407 Sapria himalayana HOM05D004479 ORTHO05D005597 1.4e-12 79.0 222 35.6
SHI31116 Sapria himalayana HOM05D004479 ORTHO05D005597 1.5e-11 75.5 51 66.7
SHI42976 Sapria himalayana HOM05D004479 ORTHO05D005597 2.0e-11 75.1 132 40.2
SHI34972 Sapria himalayana HOM05D004479 ORTHO05D005597 3.4e-11 74.3 116 41.4
Lj5C22T9 Lonicera japonica HOM05D004479 ORTHO05D029161 4.4e-11 73.9 69 72.5
Psat7g008520 Pisum sativum HOM05D004479 ORTHO05D005597 5.7e-11 73.6 87 54.0
FAN12G4029 Fragaria x ananassa HOM05D002474 ORTHO05D007142 9.8e-11 72.8 121 47.1
Hma1.2p1_0370F.1_g138010 Hydrangea macrophylla HOM05D004479 ORTHO05D005597 1.7e-10 72.0 48 77.1
Psat0s2660g0040 Pisum sativum HOM05D000020 ORTHO05D015801 2.2e-10 71.6 73 58.9
COL.COLO4_18371 Corchorus olitorius HOM05D004479 ORTHO05D005597 2.8e-10 71.2 69 55.1
SHI31115 Sapria himalayana HOM05D004479 ORTHO05D005597 2.8e-10 71.2 44 77.3
BcaC04g22058 Brassica carinata HOM05D006908 ORTHO05D008662 3.7e-10 70.9 39 87.2
C09p24010 Brassica napus HOM05D002960 ORTHO05D042139 3.7e-10 70.9 39 87.2
BolC9t55321H Brassica oleracea HOM05D002960 ORTHO05D042139 3.7e-10 70.9 39 87.2
SHI49595 Sapria himalayana HOM05D004479 ORTHO05D005597 3.7e-10 70.9 113 43.4
Peaxi162Scf00038g02640 Petunia axillaris HOM05D004479 ORTHO05D029161 6.3e-10 70.1 65 63.1
SHI50578 Sapria himalayana HOM05D004479 ORTHO05D005597 1.8e-09 68.6 248 31.9
Haze_18674 Corylus avellana HOM05D004479 ORTHO05D005597 2.4e-09 68.2 39 84.6
Haze_16261 Corylus avellana HOM05D004479 ORTHO05D029161 5.4e-09 67.0 68 60.3
SHI36675 Sapria himalayana HOM05D004479 ORTHO05D005597 5.9e-08 63.5 54 63.0
BcaC02g11491 Brassica carinata HOM05D019637 ORTHO05D018695 3.9e-07 60.8 40 82.5
C04p14790 Brassica napus HOM05D004479 ORTHO05D018695 3.9e-07 60.8 40 82.5
BolC4t23053H Brassica oleracea HOM05D004479 ORTHO05D018695 3.9e-07 60.8 40 82.5
Psat3g045760 Pisum sativum HOM05D004392 ORTHO05D004846 3.9e-07 60.8 69 53.6
COL.COLO4_27264 Corchorus olitorius HOM05D004479 ORTHO05D005597 5.0e-07 60.5 59 54.2
QL08p038027 Quercus lobata HOM05D004479 ORTHO05D337893 6.6e-07 60.1 195 33.3
SHI35501 Sapria himalayana HOM05D004479 ORTHO05D005597 6.6e-07 60.1 100 42.0
SHI13126 Sapria himalayana HOM05D000105 ORTHO05D000023 1.1e-06 59.3 48 58.3
Psat3g175600 Pisum sativum HOM05D004479 ORTHO05D005597 4.3e-06 57.4 42 73.8


User provided reference genes

Program Settings