Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc04_g00060 Coffea canephora HOM05D005569 ORTHO05D007052 7.3e-56 220.3 111 100.0
Lj6P639T26 Lonicera japonica HOM05D005569 ORTHO05D007052 1.8e-38 162.5 110 76.4
HanXRQChr12g0359721 Helianthus annuus HOM05D005569 ORTHO05D007052 2.4e-38 162.2 110 74.5
Nitab4.5_0007226g0010 Nicotiana tabacum HOM05D005569 ORTHO05D007052 6.9e-38 160.6 110 74.5
Actinidia00647 Actinidia chinensis HOM05D005569 ORTHO05D007052 1.5e-37 159.5 110 76.4
arahy.Tifrunner.gnm1.ann1.0XD544 Arachis hypogaea HOM05D005569 ORTHO05D007052 1.5e-37 159.5 110 70.9
HanXRQChr10g0311221 Helianthus annuus HOM05D005569 ORTHO05D007052 1.5e-37 159.5 110 74.5
Lsat_1_v5_gn_5_137201 Lactuca sativa HOM05D005569 ORTHO05D007052 1.5e-37 159.5 110 72.7
CSS0046788 Camellia sinensis var. sinensis HOM05D005569 ORTHO05D007052 2.0e-37 159.1 110 71.8
Nitab4.5_0002354g0080 Nicotiana tabacum HOM05D005569 ORTHO05D007052 2.0e-37 159.1 109 71.6
CAN.G1445.2 Capsicum annuum HOM05D005569 ORTHO05D007052 2.6e-37 158.7 110 72.7
ECA234G1813 Erigeron canadensis HOM05D005569 ORTHO05D007052 2.6e-37 158.7 110 73.6
arahy.Tifrunner.gnm1.ann1.DT0EHL Arachis hypogaea HOM05D005569 ORTHO05D007052 3.4e-37 158.3 110 70.9
TAR626G0082 Trochodendron aralioides HOM05D005569 ORTHO05D007052 3.4e-37 158.3 110 72.7
Nitab4.5_0001708g0020 Nicotiana tabacum HOM05D005569 ORTHO05D007052 4.5e-37 157.9 110 73.6
Nn8g41003 Nelumbo nucifera HOM05D005569 ORTHO05D007052 5.8e-37 157.5 110 73.6
Hma1.2p1_1111F.1_g258450 Hydrangea macrophylla HOM05D005569 ORTHO05D007052 7.6e-37 157.1 110 74.5
Migut.D00888 Erythranthe guttata HOM05D005569 ORTHO05D007052 3.8e-36 154.8 110 69.1
Gohir.A05G114900 Gossypium hirsutum HOM05D005569 ORTHO05D007052 3.8e-36 154.8 110 73.6
Gohir.D05G115300 Gossypium hirsutum HOM05D005569 ORTHO05D007052 3.8e-36 154.8 110 73.6
Gorai.009G119400 Gossypium raimondii HOM05D005569 ORTHO05D007052 3.8e-36 154.8 110 73.6
Sopen08g026060 Solanum pennellii HOM05D005569 ORTHO05D007052 1.1e-35 153.3 110 70.9
PGSC0003DMG400001840 Solanum tuberosum HOM05D005569 ORTHO05D007052 1.1e-35 153.3 110 71.8
Peaxi162Scf00084g00024 Petunia axillaris HOM05D005569 ORTHO05D007052 1.4e-35 152.9 110 71.8
vmacro12582 Vaccinium macrocarpon HOM05D005569 ORTHO05D007052 1.4e-35 152.9 109 73.4
Prupe.3G023400 Prunus persica HOM05D005569 ORTHO05D007052 1.9e-35 152.5 101 79.2
Ca_20982_v3 Cicer arietinum L. HOM05D005569 ORTHO05D007052 3.2e-35 151.8 110 69.1
Lj3g0021821 Lotus japonicus HOM05D005569 ORTHO05D007052 3.2e-35 151.8 110 69.1
Ciclev10032913m.g Citrus clementina HOM05D005569 ORTHO05D007052 4.2e-35 151.4 110 70.0
SGA_v2.0_scaffold4G02105 Striga asiatica HOM05D005569 ORTHO05D007052 5.4e-35 151.0 110 70.0
TWI75G0478 Tripterygium wilfordii HOM05D005569 ORTHO05D007052 5.4e-35 151.0 103 74.8
AUR62025672 Chenopodium quinoa HOM05D005569 ORTHO05D007052 7.1e-35 150.6 110 69.1
CiPaw.02G129100 Carya illinoinensis HOM05D005569 ORTHO05D007052 1.2e-34 149.8 107 73.8
MD17G1161700 Malus domestica HOM05D005569 ORTHO05D007052 1.2e-34 149.8 101 75.2
Sc15g0001130 Simmondsia chinensis HOM05D005569 ORTHO05D007052 1.2e-34 149.8 111 71.2
CAN.G308.17 Capsicum annuum HOM05D005569 ORTHO05D007052 1.6e-34 149.4 109 67.9
Medtr4g005340 Medicago truncatula HOM05D005569 ORTHO05D007052 2.7e-34 148.7 110 68.2
FAN09G0120 Fragaria x ananassa HOM05D005569 ORTHO05D007052 3.5e-34 148.3 103 74.8
FvH4_6g36900 Fragaria vesca HOM05D005569 ORTHO05D007052 4.6e-34 147.9 103 73.8
FAN14G0087 Fragaria x ananassa HOM05D000810 ORTHO05D003737 4.6e-34 147.9 103 73.8
Sopen06g022820 Solanum pennellii HOM05D005569 ORTHO05D007052 4.6e-34 147.9 109 67.0
COL.COLO4_31145 Corchorus olitorius HOM05D000810 ORTHO05D003737 6.0e-34 147.5 110 67.3
Thecc.06G056000 Theobroma cacao HOM05D005569 ORTHO05D007052 6.0e-34 147.5 110 69.1
GSVIVG01029554001 Vitis vinifera HOM05D005569 ORTHO05D007052 6.0e-34 147.5 103 72.8
Actinidia31124 Actinidia chinensis HOM05D005569 ORTHO05D007052 1.3e-33 146.4 110 71.8
ClCG09G020780 Citrullus lanatus HOM05D005569 ORTHO05D007052 1.8e-33 146.0 110 69.1
MD09G1166000 Malus domestica HOM05D005569 ORTHO05D007052 1.8e-33 146.0 101 73.3
Psat7g265160 Pisum sativum HOM05D005569 ORTHO05D007052 1.8e-33 146.0 110 68.2
PGSC0003DMG400026509 Solanum tuberosum HOM05D005569 ORTHO05D007052 2.3e-33 145.6 109 67.0
MSTRG.4523 Avicennia marina HOM05D005569 ORTHO05D007052 3.9e-33 144.8 111 69.4
MSTRG.9559 Avicennia marina HOM05D005569 ORTHO05D007052 5.1e-33 144.4 110 65.5
Cpa.g.sc176.7 Carica papaya HOM05D005569 ORTHO05D007052 5.1e-33 144.4 110 69.1
MELO3C002923.2 Cucumis melo HOM05D005569 ORTHO05D007052 5.1e-33 144.4 110 69.1
RcHm_v2.0_Chr2g0149331 Rosa chinensis HOM05D005569 ORTHO05D007052 5.1e-33 144.4 103 71.8
QL05p088862 Quercus lobata HOM05D005569 ORTHO05D007052 6.7e-33 144.1 110 71.8
Sed0017383 Sechium edule HOM05D005569 ORTHO05D007052 6.7e-33 144.1 110 68.2
TPR.G38774 Trifolium pratense HOM05D005569 ORTHO05D007052 8.7e-33 143.7 110 68.2
PSO063G3520 Papaver somniferum HOM05D005569 ORTHO05D007052 1.1e-32 143.3 110 66.4
PSO170G0292 Papaver somniferum HOM05D005569 ORTHO05D007052 1.1e-32 143.3 110 66.4
Potri.008G004200 Populus trichocarpa HOM05D005569 ORTHO05D007052 1.1e-32 143.3 101 73.3
Solyc08g077470.4 Solanum lycopersicum HOM05D005569 ORTHO05D007052 1.9e-32 142.5 93 74.2
Manes.06G179601 Manihot esculenta HOM05D005569 ORTHO05D007052 2.5e-32 142.1 101 74.3
CsaV3_5G025600 Cucumis sativus L. HOM05D005569 ORTHO05D007052 3.3e-32 141.7 110 67.3
ATR0626G016 Amborella trichopoda HOM05D005569 ORTHO05D007052 7.4e-32 140.6 107 66.4
Eucgr.J00350 Eucalyptus grandis HOM05D005569 ORTHO05D007052 7.4e-32 140.6 100 71.0
CiPaw.01G208600 Carya illinoinensis HOM05D005569 ORTHO05D007052 1.6e-31 139.4 103 69.9
CDE04G0659 Ceratophyllum demersum HOM05D005569 ORTHO05D007052 1.6e-31 139.4 107 68.2
Hund05672 Selenicereus undatus HOM05D005569 ORTHO05D007052 1.6e-31 139.4 109 68.8
Aqoxy7G02714 Aquilegia oxysepala HOM05D005569 ORTHO05D007052 3.7e-31 138.3 110 64.5
CDE07G0675 Ceratophyllum demersum HOM05D005569 ORTHO05D007052 8.1e-31 137.1 104 70.2
HPP92_023863 Vanilla planifolia HOM05D005569 ORTHO05D007052 1.4e-30 136.3 101 69.3
VMungo0331G1663 Vigna mungo HOM05D005569 ORTHO05D007052 1.8e-30 136.0 110 62.7
Zm00001eb414080 Zea mays HOM05D005569 ORTHO05D007052 1.8e-30 136.0 110 63.6
Lalb_Chr01g0011651 Lupinus albus HOM05D005569 ORTHO05D007052 5.3e-30 134.4 90 77.8
Os08g0225100 Oryza sativa ssp. japonica HOM05D005569 ORTHO05D007052 5.3e-30 134.4 110 64.5
THA.LOC104808103 Tarenaya hassleriana HOM05D005569 ORTHO05D007052 6.9e-30 134.0 94 74.5
FAN05G2575 Fragaria x ananassa HOM05D005569 ORTHO05D007052 2.6e-29 132.1 132 57.6
AL2G39310 Arabidopsis lyrata HOM05D005569 ORTHO05D007052 3.4e-29 131.7 94 71.3
Sp1g14960 Schrenkiella parvula HOM05D005569 ORTHO05D007052 7.6e-29 130.6 110 62.7
AT1G78895 Arabidopsis thaliana HOM05D005569 ORTHO05D007052 9.9e-29 130.2 94 70.2
BcaC07g41383 Brassica carinata HOM05D005569 ORTHO05D007052 9.9e-29 130.2 89 71.9
BcaB02g07184 Brassica carinata HOM05D005569 ORTHO05D007052 1.3e-28 129.8 94 69.1
Thhalv10019242m.g Eutrema salsugineum HOM05D005569 ORTHO05D007052 1.7e-28 129.4 94 68.1
Glyma.07G001900 Glycine max HOM05D005569 ORTHO05D007052 1.7e-28 129.4 89 75.3
Sp5g33910 Schrenkiella parvula HOM05D005569 ORTHO05D007052 2.2e-28 129.0 94 68.1
BraA09t41445Z Brassica rapa HOM05D005569 ORTHO05D007052 6.4e-28 127.5 92 70.7
FAN02G3798 Fragaria x ananassa HOM05D005569 ORTHO05D007052 6.4e-28 127.5 108 66.7
Oeu049628.2 Olea europaea HOM05D005569 ORTHO05D007052 1.1e-27 126.7 75 82.7
Carub.0001s1656 Capsella rubella HOM05D005569 ORTHO05D007052 1.4e-27 126.3 88 71.6
BcaC07g41456 Brassica carinata HOM05D005569 ORTHO05D007052 4.2e-27 124.8 92 69.6
BolC8t51973H Brassica oleracea HOM05D005569 ORTHO05D007052 4.2e-27 124.8 92 69.6
Duzib192G1047 Durio zibethinus HOM05D005569 ORTHO05D007052 4.2e-27 124.8 85 75.3
AL1G28990 Arabidopsis lyrata HOM05D005569 ORTHO05D007052 5.5e-27 124.4 88 71.6
CARHR017290 Cardamine hirsuta HOM05D005569 ORTHO05D007052 5.5e-27 124.4 89 68.5
Hund18590 Selenicereus undatus HOM05D005569 ORTHO05D007052 5.5e-27 124.4 104 66.3
Phvul.010G164400 Phaseolus vulgaris HOM05D005569 ORTHO05D007052 9.3e-27 123.6 97 64.9
SalBow4G0561 Salvia bowleyana HOM05D005569 ORTHO05D007052 9.3e-27 123.6 131 53.4
AUR62001332 Chenopodium quinoa HOM05D005569 ORTHO05D007052 1.2e-26 123.2 77 81.8
AT1G16825 Arabidopsis thaliana HOM05D005569 ORTHO05D007052 1.6e-26 122.9 84 73.8
CARHR072480 Cardamine hirsuta HOM05D005569 ORTHO05D007052 1.6e-26 122.9 94 66.0
Carub.0002s2572 Capsella rubella HOM05D005569 ORTHO05D007052 2.1e-26 122.5 89 71.9
EL10Ac7g18137 Beta vulgaris HOM05D005569 ORTHO05D007052 2.7e-26 122.1 73 83.6
PGR031G1139 Punica granatum HOM05D005569 ORTHO05D007052 3.5e-26 121.7 119 58.0
Nitab4.5_0003757g0060 Nicotiana tabacum HOM05D005569 ORTHO05D007052 4.6e-26 121.3 75 78.7
Aa31LG4G2110 Aethionema arabicum HOM05D005569 ORTHO05D007052 1.0e-25 120.2 89 70.8
A07p27440 Brassica napus HOM05D005569 ORTHO05D007052 2.3e-25 119.0 95 67.4
BolC6t38199H Brassica oleracea HOM05D005569 ORTHO05D007052 2.3e-25 119.0 95 67.4
BraA07t30385Z Brassica rapa HOM05D005569 ORTHO05D007052 2.3e-25 119.0 95 67.4
BcaC08g45404 Brassica carinata HOM05D005569 ORTHO05D007052 3.9e-25 118.2 95 66.3
C06p30360 Brassica napus HOM05D005569 ORTHO05D007052 3.9e-25 118.2 95 66.3
SEGI_33936 Sequoiadendron giganteum HOM05D005569 ORTHO05D007052 2.5e-24 115.5 104 59.6
Prupe.3G058300 Prunus persica HOM05D005569 ORTHO05D007052 1.6e-23 112.8 96 67.7
A09p60680 Brassica napus HOM05D005569 ORTHO05D007052 2.8e-23 112.1 78 73.1
C08p44280 Brassica napus HOM05D005569 ORTHO05D007052 1.8e-22 109.4 78 71.8
DCAR_028944 Daucus carota HOM05D005569 ORTHO05D007052 8.4e-20 100.5 59 86.4
Mapoly0045s0143 Marchantia polymorpha HOM05D005569 ORTHO05D007052 2.5e-19 99.0 77 61.0
SEGI_27689 Sequoiadendron giganteum HOM05D005569 ORTHO05D007052 5.5e-19 97.8 74 66.2
SMO215G0002 Selaginella moellendorffii HOM05D005569 ORTHO05D007052 7.1e-19 97.4 74 64.9
CANSAT01G2461 Cannabis sativa HOM05D005569 ORTHO05D007052 2.1e-18 95.9 71 67.6
Haze_16187 Corylus avellana HOM05D005569 ORTHO05D007052 1.0e-17 93.6 51 90.2
MBI16_g18210_MAGBIO Magnolia biondii HOM05D005569 ORTHO05D007052 2.3e-17 92.4 51 86.3
Sabra08G0001800 Salix brachista HOM05D005569 ORTHO05D007052 3.0e-17 92.0 50 90.0
Pp3c8_16360 Physcomitrium patens HOM05D005569 ORTHO05D007052 4.3e-16 88.2 75 61.3
Thhalv10009539m.g Eutrema salsugineum HOM05D005569 ORTHO05D007052 1.3e-15 86.7 51 80.4
BcaC07g41384 Brassica carinata HOM05D005569 ORTHO05D007052 1.6e-15 86.3 88 53.4
Pp3c24_12140 Physcomitrium patens HOM05D005569 ORTHO05D007052 2.2e-15 85.9 89 55.1
SEGI_34083 Sequoiadendron giganteum HOM05D000074 ORTHO05D000220 2.7e-10 68.9 50 66.0
CBR_g41646 Chara braunii HOM05D000785 ORTHO05D000231 3.6e-10 68.6 64 56.2
C08p44240 Brassica napus HOM05D005569 ORTHO05D007052 1.5e-08 63.2 48 64.6
BolC8t51970H Brassica oleracea HOM05D005569 ORTHO05D007052 1.5e-08 63.2 48 64.6
CBR_g40779 Chara braunii HOM05D005569 ORTHO05D007052 4.3e-08 61.6 74 47.3
CBR_g49429 Chara braunii HOM05D005569 ORTHO05D007052 4.3e-08 61.6 74 45.9
Ah.12g061900 Amaranthus hybridus HOM05D005569 ORTHO05D007052 9.1e-06 53.9 63 47.6


User provided reference genes

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