Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc04_g00020 Coffea canephora HOM05D007236 ORTHO05D009150 4.9e-194 681.0 359 100.0
Dinv20327 Davidia involucrata HOM05D007236 ORTHO05D009150 1.0e-127 460.7 352 68.5
GSVIVG01029561001 Vitis vinifera HOM05D007236 ORTHO05D009150 3.8e-122 442.2 355 65.1
Thecc.06G055000 Theobroma cacao HOM05D007236 ORTHO05D009150 2.3e-119 433.0 346 66.2
Duzib160G0063 Durio zibethinus HOM05D007236 ORTHO05D009150 4.0e-119 432.2 347 65.4
TAR636G0504 Trochodendron aralioides HOM05D007236 ORTHO05D009150 4.0e-119 432.2 358 63.4
Sopen03g041760 Solanum pennellii HOM05D007236 ORTHO05D009150 6.7e-119 431.4 355 64.2
Lj3g0020822 Lotus japonicus HOM05D007236 ORTHO05D009150 1.2e-118 430.6 353 64.3
Solyc03g124030.4 Solanum lycopersicum HOM05D007236 ORTHO05D009150 1.5e-118 430.3 355 63.9
Manes.06G179100 Manihot esculenta HOM05D007236 ORTHO05D009150 3.3e-118 429.1 345 65.8
Nn5g27081 Nelumbo nucifera HOM05D007236 ORTHO05D009150 4.4e-118 428.7 346 65.9
AUR62025709 Chenopodium quinoa HOM05D007236 ORTHO05D009150 2.0e-115 419.9 353 62.3
ECA234G1409 Erigeron canadensis HOM05D007236 ORTHO05D009150 3.5e-115 419.1 351 62.1
Actinidia31123 Actinidia chinensis HOM05D007236 ORTHO05D009150 5.9e-115 418.3 346 64.7
TWI18G0405 Tripterygium wilfordii HOM05D007236 ORTHO05D009150 1.0e-114 417.5 354 63.8
Potri.008G003800 Populus trichocarpa HOM05D007236 ORTHO05D009150 3.8e-114 415.6 355 63.4
Sabra08G0001500 Salix brachista HOM05D007236 ORTHO05D009150 5.0e-114 415.2 351 63.8
QL05p088536 Quercus lobata HOM05D007236 ORTHO05D009150 6.5e-114 414.8 344 63.4
Aqoxy5G00022 Aquilegia oxysepala HOM05D007236 ORTHO05D009150 8.5e-114 414.5 349 64.8
Prupe.3G024200 Prunus persica HOM05D007236 ORTHO05D009150 3.2e-113 412.5 349 62.5
FAN14G0281 Fragaria x ananassa HOM05D007236 ORTHO05D009150 5.5e-113 411.8 345 64.3
Hund05669 Selenicereus undatus HOM05D007236 ORTHO05D009150 7.2e-113 411.4 343 62.7
VMungo0331G1697 Vigna mungo HOM05D007236 ORTHO05D009150 7.2e-113 411.4 358 61.7
FvH4_6g36830 Fragaria vesca HOM05D007236 ORTHO05D009150 1.2e-112 410.6 345 64.3
Glyma.08G225400 Glycine max HOM05D007236 ORTHO05D009150 1.2e-112 410.6 344 64.2
RcHm_v2.0_Chr2g0149221 Rosa chinensis HOM05D007236 ORTHO05D009150 1.0e-111 407.5 346 63.3
Glyma.07G001600 Glycine max HOM05D007236 ORTHO05D009150 8.8e-111 404.4 344 62.8
Gohir.A06G116300 Gossypium hirsutum HOM05D007236 ORTHO05D009150 8.8e-111 404.4 346 63.0
FAN09G1281 Fragaria x ananassa HOM05D007236 ORTHO05D009150 1.2e-110 404.1 346 62.1
SGA_v2.0_scaffold71G23973 Striga asiatica HOM05D007236 ORTHO05D009150 1.5e-110 403.7 341 63.6
Lsat_1_v5_gn_5_137160 Lactuca sativa HOM05D007236 ORTHO05D009150 2.6e-110 402.9 356 59.8
Eucgr.J03184 Eucalyptus grandis HOM05D007236 ORTHO05D009150 5.7e-110 401.7 346 61.8
Oeu039939.2 Olea europaea HOM05D007236 ORTHO05D009150 7.5e-110 401.4 332 63.6
THA.LOC104812331 Tarenaya hassleriana HOM05D007236 ORTHO05D009150 7.5e-110 401.4 351 61.3
Psat7g265040 Pisum sativum HOM05D007236 ORTHO05D009150 2.2e-109 399.8 357 60.2
HanXRQChr10g0311241 Helianthus annuus HOM05D007236 ORTHO05D009150 6.3e-109 398.3 355 59.4
MD09G1166500 Malus domestica HOM05D007236 ORTHO05D009150 8.3e-109 397.9 349 59.9
FAN05G3464 Fragaria x ananassa HOM05D007236 ORTHO05D009150 3.1e-108 396.0 372 58.9
Gorai.010G141500 Gossypium raimondii HOM05D007236 ORTHO05D009150 7.0e-108 394.8 357 60.8
PGR031G2337 Punica granatum HOM05D007236 ORTHO05D009150 4.5e-107 392.1 362 57.7
ClCG07G014680 Citrullus lanatus HOM05D007236 ORTHO05D009150 1.3e-106 390.6 353 59.2
Sp5g33940 Schrenkiella parvula HOM05D007236 ORTHO05D009150 1.7e-106 390.2 346 59.8
arahy.Tifrunner.gnm1.ann1.I3AU87 Arachis hypogaea HOM05D007236 ORTHO05D009150 6.6e-106 388.3 349 61.9
Ca_20979_v3 Cicer arietinum L. HOM05D007236 ORTHO05D009150 1.9e-105 386.7 355 59.7
CARHR072510 Cardamine hirsuta HOM05D007236 ORTHO05D009150 2.5e-105 386.3 341 59.8
arahy.Tifrunner.gnm1.ann1.QM8PPU Arachis hypogaea HOM05D007236 ORTHO05D009150 7.2e-105 384.8 328 63.7
AL2G39340 Arabidopsis lyrata HOM05D007236 ORTHO05D009150 9.5e-105 384.4 345 58.8
CsaV3_3G030460 Cucumis sativus L. HOM05D007236 ORTHO05D009150 1.6e-104 383.6 353 58.1
MELO3C026715.2 Cucumis melo HOM05D007236 ORTHO05D009150 3.6e-104 382.5 355 57.7
Carub.0002s2575 Capsella rubella HOM05D007236 ORTHO05D009150 8.0e-104 381.3 356 57.3
BcaB02g07186 Brassica carinata HOM05D007236 ORTHO05D009150 4.0e-103 379.0 346 58.7
Aa31LG4G2080 Aethionema arabicum HOM05D007236 ORTHO05D009150 3.4e-102 375.9 345 59.1
AT1G78915 Arabidopsis thaliana HOM05D007236 ORTHO05D009150 3.4e-102 375.9 365 55.1
A07p27420 Brassica napus HOM05D007236 ORTHO05D009150 3.4e-102 375.9 347 58.5
BcaC08g45402 Brassica carinata HOM05D007236 ORTHO05D009150 2.2e-101 373.2 347 58.2
Medtr4g005300 Medicago truncatula HOM05D007236 ORTHO05D009150 2.2e-101 373.2 342 60.5
AUR62001326 Chenopodium quinoa HOM05D007236 ORTHO05D009150 9.2e-100 367.9 333 59.2
COL.COLO4_31136 Corchorus olitorius HOM05D007236 ORTHO05D009150 2.0e-99 366.7 345 57.7
C06p30340 Brassica napus HOM05D007236 ORTHO05D009150 3.5e-99 365.9 355 56.9
BolC6t38197H Brassica oleracea HOM05D007236 ORTHO05D009150 7.8e-99 364.8 358 56.4
DCAR_016079 Daucus carota HOM05D007236 ORTHO05D009150 3.9e-98 362.5 350 54.6
Zm00001eb305180 Zea mays HOM05D007236 ORTHO05D009150 1.1e-97 360.9 343 55.1
Sed0012172 Sechium edule HOM05D007236 ORTHO05D009150 4.3e-97 359.0 349 55.3
CDE05G3570 Ceratophyllum demersum HOM05D007236 ORTHO05D008204 5.6e-97 358.6 343 56.0
TPR.G38815 Trifolium pratense HOM05D007236 ORTHO05D009150 6.1e-96 355.1 335 58.8
unitig_32.g11550 Utricularia gibba HOM05D007236 ORTHO05D009150 4.0e-95 352.4 346 54.0
vmacro12583 Vaccinium macrocarpon HOM05D007236 ORTHO05D009150 4.0e-95 352.4 367 55.3
BraA07t30383Z Brassica rapa HOM05D007236 ORTHO05D009150 3.7e-93 345.9 381 51.7
Peaxi162Scf00038g02668 Petunia axillaris HOM05D007236 ORTHO05D009150 9.2e-92 341.3 314 59.2
Migut.I01208 Erythranthe guttata HOM05D007236 ORTHO05D009150 7.8e-91 338.2 312 59.0
Sc12g0011240 Simmondsia chinensis HOM05D000518 ORTHO05D000737 2.3e-90 336.7 273 63.7
ATR0215G005 Amborella trichopoda HOM05D007236 ORTHO05D009150 1.4e-84 317.4 339 54.3
Gohir.D06G121200 Gossypium hirsutum HOM05D007236 ORTHO05D009150 1.0e-82 311.2 346 53.2
MSTRG.22498 Avicennia marina HOM05D007236 ORTHO05D009150 2.3e-82 310.1 348 52.6
SEGI_39602 Sequoiadendron giganteum HOM05D007236 ORTHO05D009150 6.6e-82 308.5 349 49.6
Sc12g0011350 Simmondsia chinensis HOM05D007236 ORTHO05D009150 8.1e-80 301.6 243 64.6
Thhalv10018805m.g Eutrema salsugineum HOM05D007236 ORTHO05D009150 3.1e-79 299.7 355 51.0
Rhsim02G0000100 Rhododendron simsii HOM05D007236 ORTHO05D009150 3.1e-79 299.7 453 43.9
CAN.G790.6 Capsicum annuum HOM05D007236 ORTHO05D009150 4.4e-78 295.8 208 71.6
Lalb_Chr01g0011631 Lupinus albus HOM05D007236 ORTHO05D009150 9.9e-78 294.7 221 70.6
CiPaw.01G207800 Carya illinoinensis HOM05D007236 ORTHO05D009150 7.8e-75 285.0 269 58.7
PSO170G4015 Papaver somniferum HOM05D007236 ORTHO05D009150 3.3e-73 279.6 354 47.2
PSO357G0009 Papaver somniferum HOM05D007236 ORTHO05D009150 1.6e-72 277.3 350 46.9
Haze_16198 Corylus avellana HOM05D007236 ORTHO05D009150 7.6e-70 268.5 276 55.4
Lj9A543T71 Lonicera japonica HOM05D007236 ORTHO05D009150 3.3e-65 253.1 186 71.0
SMO117G0135 Selaginella moellendorffii HOM05D007236 ORTHO05D009150 1.3e-64 251.1 323 45.5
Ciclev10013942m.g Citrus clementina HOM05D007236 ORTHO05D009150 3.8e-61 239.6 186 68.3
Pp3c5_19050 Physcomitrium patens HOM05D007236 ORTHO05D009150 1.5e-54 217.6 343 39.4
FAN02G2413 Fragaria x ananassa HOM05D007236 ORTHO05D009150 2.6e-54 216.9 302 43.4
AagrBONN_evm.TU.Sc2ySwM_117.3884 Anthoceros agrestis HOM05D007236 ORTHO05D009150 1.7e-53 214.2 365 36.2
Mapoly0075s0045 Marchantia polymorpha HOM05D007236 ORTHO05D009150 1.6e-51 207.6 334 37.4
EL10Ac7g18131 Beta vulgaris HOM05D007236 ORTHO05D009150 3.5e-51 206.5 218 53.2
Cpa.g.sc176.15 Carica papaya HOM05D007236 ORTHO05D009150 9.6e-49 198.4 208 54.8
Atru.chr1.2627 Acer truncatum HOM05D007236 ORTHO05D009150 2.7e-43 180.3 139 67.6
Nitab4.5_0000499g0120 Nicotiana tabacum HOM05D007236 ORTHO05D009150 7.1e-36 155.6 113 66.4
Atru.chr1.2630 Acer truncatum HOM05D007236 ORTHO05D009150 1.3e-32 144.8 126 61.1
CANSAT01G0299 Cannabis sativa HOM05D007236 ORTHO05D009150 8.2e-32 142.1 103 71.8
Ciclev10013945m.g Citrus clementina HOM05D007236 ORTHO05D009150 4.1e-31 139.8 118 62.7
PRCOL_00005889 Prasinoderma coloniale HOM05D007236 ORTHO05D009150 2.0e-30 137.5 336 31.2
CSS0013667 Camellia sinensis var. sinensis HOM05D007236 ORTHO05D009150 7.7e-30 135.6 87 80.5
Lj9A543T70 Lonicera japonica HOM05D007236 ORTHO05D009150 2.2e-29 134.0 99 68.7
Cre12.g554103 Chlamydomonas reinhardtii HOM05D007236 ORTHO05D009150 1.4e-23 114.8 350 26.6
Os07g0287100 Oryza sativa ssp. japonica HOM05D007236 ORTHO05D009150 2.0e-17 94.4 125 40.8
MCO09G516 Micromonas commoda HOM05D007236 ORTHO05D009150 1.5e-14 84.7 339 27.4
CSS0007704 Camellia sinensis var. sinensis HOM05D007236 ORTHO05D009150 1.5e-12 78.2 87 49.4
Haze_16199 Corylus avellana HOM05D007236 ORTHO05D009150 3.6e-11 73.6 80 55.0
Aa31sc24G50 Aethionema arabicum HOM05D002308 ORTHO05D002535 3.0e-10 70.5 56 60.7
Nitab4.5_0000499g0130 Nicotiana tabacum HOM05D007236 ORTHO05D009150 1.5e-09 68.2 55 61.8


User provided reference genes

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