Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc03_g15990 Coffea canephora HOM05D005420 ORTHO05D006524 2.4e-156 555.4 281 100.0
MSTRG.24552 Avicennia marina HOM05D005420 ORTHO05D006524 1.8e-111 406.4 281 77.2
Solyc08g015620.3 Solanum lycopersicum HOM05D005420 ORTHO05D006524 8.5e-109 397.5 282 74.5
Sopen08g005610 Solanum pennellii HOM05D005420 ORTHO05D006524 8.5e-109 397.5 282 74.5
Nitab4.5_0008205g0010 Nicotiana tabacum HOM05D005420 ORTHO05D006524 1.8e-106 389.8 285 74.4
Nitab4.5_0000013g0040 Nicotiana tabacum HOM05D005420 ORTHO05D006524 1.9e-105 386.3 282 73.0
SalBow3G4646 Salvia bowleyana HOM05D005420 ORTHO05D006524 7.4e-105 384.4 253 79.4
Dinv33245 Davidia involucrata HOM05D005420 ORTHO05D006524 9.7e-105 384.0 221 87.8
CSS0017727 Camellia sinensis var. sinensis HOM05D005420 ORTHO05D006524 6.3e-104 381.3 299 70.6
Ciclev10012405m.g Citrus clementina HOM05D005420 ORTHO05D006524 3.1e-103 379.0 286 71.7
CSS0022736 Camellia sinensis var. sinensis HOM05D005420 ORTHO05D006524 6.9e-103 377.9 223 86.1
FAN26G3138 Fragaria x ananassa HOM05D005420 ORTHO05D006524 7.7e-102 374.4 287 70.7
FvH4_1g00160 Fragaria vesca HOM05D005420 ORTHO05D006524 1.0e-101 374.0 287 70.0
FAN28G0609 Fragaria x ananassa HOM05D005420 ORTHO05D006524 1.0e-101 374.0 287 70.0
MD00G1087500 Malus domestica HOM05D005420 ORTHO05D006524 1.3e-101 373.6 273 73.3
TAR636G0539 Trochodendron aralioides HOM05D005420 ORTHO05D006524 3.8e-101 372.1 301 68.4
MD15G1143300 Malus domestica HOM05D005420 ORTHO05D006524 5.0e-101 371.7 290 71.4
Thecc.05G186000 Theobroma cacao HOM05D005420 ORTHO05D006524 5.0e-101 371.7 282 72.0
Duzib177G0155 Durio zibethinus HOM05D005420 ORTHO05D006524 6.5e-101 371.3 282 72.0
Peaxi162Scf01205g00032 Petunia axillaris HOM05D005420 ORTHO05D006524 6.5e-101 371.3 281 71.2
Prupe.7G269700 Prunus persica HOM05D005420 ORTHO05D006524 8.5e-101 370.9 241 79.7
FAN23G1410 Fragaria x ananassa HOM05D005420 ORTHO05D006524 1.1e-100 370.5 287 71.1
Potri.013G084300 Populus trichocarpa HOM05D005420 ORTHO05D006524 1.1e-100 370.5 258 74.8
ECA248G1232 Erigeron canadensis HOM05D005420 ORTHO05D006524 1.9e-100 369.8 225 83.6
Migut.G00921 Erythranthe guttata HOM05D005420 ORTHO05D006524 2.5e-100 369.4 248 79.8
TAR365G1242 Trochodendron aralioides HOM05D005420 ORTHO05D006524 3.2e-100 369.0 254 74.8
RcHm_v2.0_Chr2g0084451 Rosa chinensis HOM05D005420 ORTHO05D006524 4.2e-100 368.6 223 82.5
CiPaw.02G124600 Carya illinoinensis HOM05D005420 ORTHO05D006524 9.4e-100 367.5 283 71.7
Sabra13G0078900 Salix brachista HOM05D005420 ORTHO05D006524 9.4e-100 367.5 259 74.5
HanXRQChr01g0023651 Helianthus annuus HOM05D005420 ORTHO05D006524 1.2e-99 367.1 280 71.4
HanXRQChr11g0343501 Helianthus annuus HOM05D005420 ORTHO05D006524 1.6e-99 366.7 276 72.8
unitig_27.g25143 Utricularia gibba HOM05D005420 ORTHO05D006524 4.6e-99 365.2 245 78.4
Atru.chr12.1712 Acer truncatum HOM05D005420 ORTHO05D006524 1.8e-98 363.2 225 82.2
ClCG09G014850 Citrullus lanatus HOM05D005420 ORTHO05D006524 2.3e-98 362.8 283 70.7
Lsat_1_v5_gn_1_76981 Lactuca sativa HOM05D005420 ORTHO05D006524 2.3e-98 362.8 216 85.6
CANSAT56G1087 Cannabis sativa HOM05D005420 ORTHO05D006524 3.0e-98 362.5 290 71.7
CiPaw.01G201600 Carya illinoinensis HOM05D005420 ORTHO05D006524 3.0e-98 362.5 213 86.4
arahy.Tifrunner.gnm1.ann1.D6NWCJ Arachis hypogaea HOM05D005420 ORTHO05D006524 3.9e-98 362.1 222 83.8
arahy.Tifrunner.gnm1.ann1.EMGW5K Arachis hypogaea HOM05D005420 ORTHO05D006524 3.9e-98 362.1 222 83.8
Eucgr.H01455 Eucalyptus grandis HOM05D005420 ORTHO05D006524 3.9e-98 362.1 290 68.3
Cfa008513 Carpinus fangiana HOM05D005420 ORTHO05D006524 5.1e-98 361.7 213 86.4
Ah.07g203200 Amaranthus hybridus HOM05D005420 ORTHO05D006524 8.8e-98 360.9 290 71.0
Glyma.17G000800 Glycine max HOM05D005420 ORTHO05D006524 8.8e-98 360.9 223 82.5
Gohir.A02G106300 Gossypium hirsutum HOM05D005420 ORTHO05D006524 1.1e-97 360.5 284 70.8
Gorai.003G088300 Gossypium raimondii HOM05D005420 ORTHO05D006524 1.1e-97 360.5 282 70.6
Manes.12G003300 Manihot esculenta HOM05D005420 ORTHO05D006524 1.5e-97 360.1 280 71.1
VMungo1215G3385 Vigna mungo HOM05D005420 ORTHO05D006524 1.5e-97 360.1 297 66.3
vmacro00721 Vaccinium macrocarpon HOM05D005420 ORTHO05D006524 2.0e-97 359.8 228 82.9
DCAR_005460 Daucus carota HOM05D005420 ORTHO05D006524 2.6e-97 359.4 268 73.1
Glyma.07G273700 Glycine max HOM05D005420 ORTHO05D006524 2.6e-97 359.4 223 82.1
Gohir.D03G071700 Gossypium hirsutum HOM05D005420 ORTHO05D006524 2.6e-97 359.4 282 70.6
QL10p064332 Quercus lobata HOM05D005420 ORTHO05D006524 2.6e-97 359.4 246 76.0
Rhsim09G0003700 Rhododendron simsii HOM05D005420 ORTHO05D006524 2.6e-97 359.4 224 83.5
Sed0010932 Sechium edule HOM05D005420 ORTHO05D006524 2.6e-97 359.4 273 70.0
MBI07_g10354_MAGBIO Magnolia biondii HOM05D005420 ORTHO05D006524 7.4e-97 357.8 289 67.5
SGA_v2.0_scaffold12G06218 Striga asiatica HOM05D005420 ORTHO05D006524 7.4e-97 357.8 301 68.8
Cpa.g.sc151.6 Carica papaya HOM05D005420 ORTHO05D006524 1.3e-96 357.1 204 88.2
Lj4g0016379 Lotus japonicus HOM05D005420 ORTHO05D006524 1.3e-96 357.1 224 80.4
Phvul.003G074600 Phaseolus vulgaris HOM05D005420 ORTHO05D006524 1.3e-96 357.1 288 67.0
Actinidia34566 Actinidia chinensis HOM05D005420 ORTHO05D006524 1.7e-96 356.7 291 67.7
C03p29330 Brassica napus HOM05D005420 ORTHO05D006524 2.8e-96 355.9 293 68.9
BolC3t15280H Brassica oleracea HOM05D005420 ORTHO05D006524 2.8e-96 355.9 293 68.9
AL4G42820 Arabidopsis lyrata HOM05D005420 ORTHO05D006524 6.3e-96 354.8 296 66.9
unitig_699.g19464 Utricularia gibba HOM05D005420 ORTHO05D006524 6.3e-96 354.8 193 92.2
GSVIVG01038249001 Vitis vinifera HOM05D005420 ORTHO05D006524 6.3e-96 354.8 213 84.0
AT2G43945 Arabidopsis thaliana HOM05D005420 ORTHO05D006524 1.1e-95 354.0 291 68.7
PGR119G0486 Punica granatum HOM05D005420 ORTHO05D006524 1.1e-95 354.0 197 89.8
CsaV3_7G022350 Cucumis sativus L. HOM05D005420 ORTHO05D006524 1.4e-95 353.6 253 73.9
TWI36G0345 Tripterygium wilfordii HOM05D005420 ORTHO05D006524 2.4e-95 352.8 213 84.0
Aqoxy1G01859 Aquilegia oxysepala HOM05D005420 ORTHO05D006524 3.1e-95 352.4 274 69.7
ATR0743G098 Amborella trichopoda HOM05D005420 ORTHO05D006524 5.3e-95 351.7 221 80.1
A03p24600 Brassica napus HOM05D005420 ORTHO05D006524 6.9e-95 351.3 290 68.6
Lj6C285T2 Lonicera japonica HOM05D005420 ORTHO05D006524 6.9e-95 351.3 197 90.4
PSO675G2924 Papaver somniferum HOM05D005420 ORTHO05D006524 6.9e-95 351.3 221 78.7
PSO732G0217 Papaver somniferum HOM05D005420 ORTHO05D006524 6.9e-95 351.3 221 78.7
Thhalv10001571m.g Eutrema salsugineum HOM05D005420 ORTHO05D006524 2.6e-94 349.4 297 67.7
CDE09G0694 Ceratophyllum demersum HOM05D005420 ORTHO05D006524 5.9e-94 348.2 204 83.8
AUR62023710 Chenopodium quinoa HOM05D005420 ORTHO05D006524 5.9e-94 348.2 214 83.2
BolC4t22118H Brassica oleracea HOM05D005420 ORTHO05D006524 1.0e-93 347.4 289 69.6
BraA05t19397Z Brassica rapa HOM05D005420 ORTHO05D006524 1.0e-93 347.4 296 67.9
Actinidia18399 Actinidia chinensis HOM05D005420 ORTHO05D006524 1.3e-93 347.1 295 66.8
Carub.0004s2651 Capsella rubella HOM05D005420 ORTHO05D006524 1.3e-93 347.1 292 68.5
AUR62002482 Chenopodium quinoa HOM05D005420 ORTHO05D006524 1.3e-93 347.1 214 83.6
BcaC02g12350 Brassica carinata HOM05D005420 ORTHO05D006524 1.7e-93 346.7 290 69.0
EL10Ac3g06165 Beta vulgaris HOM05D005420 ORTHO05D006524 2.2e-93 346.3 292 66.8
C04p04880 Brassica napus HOM05D005420 ORTHO05D006524 2.2e-93 346.3 290 69.0
GSVIVG01026140001 Vitis vinifera HOM05D005420 ORTHO05D006524 2.9e-93 345.9 213 80.8
A05p04100 Brassica napus HOM05D005420 ORTHO05D006524 5.0e-93 345.1 297 66.7
THA.LOC104802345 Tarenaya hassleriana HOM05D005420 ORTHO05D006524 8.5e-93 344.4 212 84.0
BraA03t11665Z Brassica rapa HOM05D005420 ORTHO05D006524 1.9e-92 343.2 291 68.0
TWI36G1305 Tripterygium wilfordii HOM05D005420 ORTHO05D006524 2.5e-92 342.8 268 70.5
CARHR139120 Cardamine hirsuta HOM05D005420 ORTHO05D006524 3.2e-92 342.4 192 89.6
Aa31LG1G25640 Aethionema arabicum HOM05D005420 ORTHO05D006524 5.5e-92 341.7 225 78.2
Duzib128G1088 Durio zibethinus HOM05D005420 ORTHO05D006524 5.5e-92 341.7 195 88.2
BcaB02g08884 Brassica carinata HOM05D005420 ORTHO05D006524 4.7e-91 338.6 207 83.6
BcaB06g29350 Brassica carinata HOM05D005420 ORTHO05D006524 6.1e-91 338.2 205 85.4
THA.LOC104804283 Tarenaya hassleriana HOM05D005420 ORTHO05D006524 1.8e-90 336.7 216 81.5
Aa31LG10G14100 Aethionema arabicum HOM05D005420 ORTHO05D006524 2.3e-90 336.3 303 63.0
Os01g0338600 Oryza sativa ssp. japonica HOM05D005420 ORTHO05D006524 8.8e-90 334.3 281 65.1
Psat4g001320 Pisum sativum HOM05D005420 ORTHO05D006524 1.1e-89 334.0 256 71.1
Carub.0005s2660 Capsella rubella HOM05D005420 ORTHO05D006524 1.5e-89 333.6 295 65.4
HPP92_024700 Vanilla planifolia HOM05D005420 ORTHO05D006524 2.6e-89 332.8 258 68.2
AT3G59870 Arabidopsis thaliana HOM05D005420 ORTHO05D006524 4.4e-89 332.0 206 81.1
Sp4g26040 Schrenkiella parvula HOM05D005420 ORTHO05D006524 9.7e-89 330.9 284 68.7
Zm00001eb159810 Zea mays HOM05D005420 ORTHO05D006524 9.1e-87 324.3 213 78.9
SMO367G0538 Selaginella moellendorffii HOM05D005420 ORTHO05D006524 1.2e-83 313.9 185 84.3
Pp3c8_21410 Physcomitrium patens HOM05D005420 ORTHO05D006524 3.6e-83 312.4 204 77.0
Pp3c24_16460 Physcomitrium patens HOM05D005420 ORTHO05D006524 8.0e-83 311.2 222 73.0
SEGI_26827 Sequoiadendron giganteum HOM05D005420 ORTHO05D006524 2.3e-82 309.7 191 82.2
Dinv24753 Davidia involucrata HOM05D005420 ORTHO05D006524 3.0e-82 309.3 225 73.3
Mapoly0136s0029 Marchantia polymorpha HOM05D005420 ORTHO05D006524 1.2e-81 307.4 203 77.8
Haze_11131 Corylus avellana HOM05D005420 ORTHO05D006524 1.3e-80 303.9 338 53.8
Nn7g37463 Nelumbo nucifera HOM05D005420 ORTHO05D006524 3.7e-80 302.4 217 73.3
Migut.N03031 Erythranthe guttata HOM05D005420 ORTHO05D006524 6.3e-80 301.6 285 64.6
TPR.G6015 Trifolium pratense HOM05D005420 ORTHO05D006524 4.5e-78 295.4 245 68.6
Manes.13G003200 Manihot esculenta HOM05D005420 ORTHO05D006524 5.5e-76 288.5 157 93.0
Nn3g18334 Nelumbo nucifera HOM05D005420 ORTHO05D006524 9.4e-76 287.7 249 66.7
Sc25g0003040 Simmondsia chinensis HOM05D005420 ORTHO05D006524 9.1e-71 271.2 181 76.8
Hund22588 Selenicereus undatus HOM05D005420 ORTHO05D006524 1.9e-68 263.5 208 69.7
Medtr4g134910 Medicago truncatula HOM05D005420 ORTHO05D006524 1.0e-66 257.7 151 85.4
Lalb_Chr18g0044961 Lupinus albus HOM05D005420 ORTHO05D006524 7.5e-65 251.5 134 94.8
MCO05G102 Micromonas commoda HOM05D005420 ORTHO05D006524 7.5e-65 251.5 160 76.2
Oeu022910.1 Olea europaea HOM05D005420 ORTHO05D006524 7.0e-63 245.0 135 91.1
Cre16.g676450 Chlamydomonas reinhardtii HOM05D005420 ORTHO05D006524 3.5e-62 242.7 192 65.6
PRCOL_00006877 Prasinoderma coloniale HOM05D005420 ORTHO05D006524 4.3e-60 235.7 160 71.2
Atru.chr12.1711 Acer truncatum HOM05D005420 ORTHO05D006524 1.4e-58 230.7 191 68.6
Zm00001eb356860 Zea mays HOM05D005420 ORTHO05D006524 1.4e-58 230.7 221 59.3
Ca_13540_v3 Cicer arietinum L. HOM05D005420 ORTHO05D006524 1.8e-58 230.3 266 54.1
AagrBONN_evm.TU.Sc2ySwM_228.1821 Anthoceros agrestis HOM05D005420 ORTHO05D006524 5.0e-45 185.7 157 61.8
Sed0016168 Sechium edule HOM05D005420 ORTHO05D006524 4.1e-39 166.0 90 93.3
MBI07_g42072_MAGBIO Magnolia biondii HOM05D005420 ORTHO05D006524 6.0e-38 162.2 89 89.9
CDE02G3676 Ceratophyllum demersum HOM05D005420 ORTHO05D006524 1.2e-35 154.5 232 44.0
Pp3c20_1670 Physcomitrium patens HOM05D005420 ORTHO05D006524 5.8e-33 145.6 158 50.0
Eucgr.L00810 Eucalyptus grandis HOM05D005420 ORTHO05D006524 1.2e-30 137.9 175 48.6
Eucgr.H01440 Eucalyptus grandis HOM05D005420 ORTHO05D006524 8.7e-29 131.7 169 47.9
Lsat_1_v5_gn_1_75001 Lactuca sativa HOM05D005420 ORTHO05D006524 4.4e-25 119.4 78 74.4
MSTRG.9265 Avicennia marina HOM05D005420 ORTHO05D006524 2.9e-24 116.7 86 69.8
Lsat_1_v5_gn_5_160100 Lactuca sativa HOM05D005420 ORTHO05D006524 5.4e-23 112.5 78 69.2
CBR_g10867 Chara braunii HOM05D005420 ORTHO05D006524 9.9e-17 91.7 178 36.0
Sed0003231 Sechium edule HOM05D005420 ORTHO05D006524 1.4e-10 71.2 93 41.9
Lalb_Chr18g0044971 Lupinus albus HOM05D005420 ORTHO05D006524 1.7e-08 64.3 58 55.2


User provided reference genes

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