Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc03_g15890 Coffea canephora HOM05D004038 ORTHO05D004619 0.0e+00 1175.6 604 100.0
Peaxi162Scf01205g00162 Petunia axillaris HOM05D004038 ORTHO05D004619 2.7e-261 905.2 590 78.0
Manes.01G009451 Manihot esculenta HOM05D004038 ORTHO05D004619 7.3e-259 897.1 602 76.6
Dinv24739 Davidia involucrata HOM05D004038 ORTHO05D004619 8.1e-258 893.6 599 76.0
Dinv33253 Davidia involucrata HOM05D004038 ORTHO05D004619 3.1e-257 891.7 596 76.0
Nitab4.5_0000348g0080 Nicotiana tabacum HOM05D004038 ORTHO05D004619 3.1e-257 891.7 586 76.8
Oeu061885.1 Olea europaea HOM05D004038 ORTHO05D004619 1.3e-255 886.3 594 76.4
Cfa008534 Carpinus fangiana HOM05D004038 ORTHO05D004619 2.2e-255 885.6 577 77.8
PGSC0003DMG400013719 Solanum tuberosum HOM05D004038 ORTHO05D004619 6.4e-255 884.0 587 76.5
CAN.G68.3 Capsicum annuum HOM05D004038 ORTHO05D004619 1.4e-254 882.9 587 76.5
CiPaw.01G203200 Carya illinoinensis HOM05D004038 ORTHO05D004619 1.4e-254 882.9 577 77.3
QL10p064923 Quercus lobata HOM05D004038 ORTHO05D004619 4.1e-254 881.3 576 77.4
Haze_11105 Corylus avellana HOM05D004038 ORTHO05D004619 9.2e-254 880.2 577 77.1
Solyc08g015780.3 Solanum lycopersicum HOM05D004038 ORTHO05D004619 1.6e-253 879.4 587 76.1
Lj6A289T17 Lonicera japonica HOM05D004038 ORTHO05D004619 2.7e-253 878.6 593 75.4
Sopen08g005950 Solanum pennellii HOM05D004038 ORTHO05D004619 3.5e-253 878.2 587 76.1
CiPaw.02G125700 Carya illinoinensis HOM05D004038 ORTHO05D004619 9.6e-251 870.2 580 75.7
MSTRG.24543 Avicennia marina HOM05D004038 ORTHO05D004619 4.7e-250 867.8 606 74.6
GSVIVG01038267001 Vitis vinifera HOM05D004038 ORTHO05D004619 6.2e-250 867.5 576 75.7
Nitab4.5_0012258g0010 Nicotiana tabacum HOM05D004038 ORTHO05D004619 1.2e-248 863.2 586 75.1
Atru.chr3.1959 Acer truncatum HOM05D004038 ORTHO05D004619 1.5e-248 862.8 577 75.6
Cpa.g.sc9.239 Carica papaya HOM05D004038 ORTHO05D004619 1.5e-248 862.8 578 76.1
Hma1.2p1_0513F.1_g169760 Hydrangea macrophylla HOM05D004038 ORTHO05D004619 1.5e-248 862.8 586 76.1
Actinidia18385 Actinidia chinensis HOM05D004038 ORTHO05D004619 2.9e-247 858.6 591 74.3
TAR365G0572 Trochodendron aralioides HOM05D004038 ORTHO05D004619 2.9e-247 858.6 590 73.2
Thecc.05G000500 Theobroma cacao HOM05D004038 ORTHO05D004619 4.9e-247 857.8 577 75.6
TWI63G0698 Tripterygium wilfordii HOM05D004038 ORTHO05D004619 1.9e-246 855.9 577 76.9
Eucgr.A00409 Eucalyptus grandis HOM05D004038 ORTHO05D004619 2.4e-246 855.5 584 74.7
Sabra07G0114900 Salix brachista HOM05D004038 ORTHO05D004619 9.3e-246 853.6 599 72.8
Nitab4.5_0000219g0020 Nicotiana tabacum HOM05D004038 ORTHO05D004619 1.2e-245 853.2 543 79.0
Migut.N03013 Erythranthe guttata HOM05D004038 ORTHO05D004619 2.7e-245 852.0 581 75.4
Ciclev10019310m.g Citrus clementina HOM05D004038 ORTHO05D004619 3.5e-245 851.7 580 74.8
Nitab4.5_0008814g0010 Nicotiana tabacum HOM05D004038 ORTHO05D004619 6.0e-245 850.9 546 78.0
Prupe.7G271200 Prunus persica HOM05D004038 ORTHO05D004619 7.8e-245 850.5 577 75.6
MSTRG.22058 Avicennia marina HOM05D004038 ORTHO05D004619 1.0e-244 850.1 596 73.8
FvH4_1g00080 Fragaria vesca HOM05D004038 ORTHO05D004619 1.3e-244 849.7 581 75.2
FAN28G1790 Fragaria x ananassa HOM05D004038 ORTHO05D004619 1.7e-244 849.4 581 75.0
HanXRQChr01g0023591 Helianthus annuus HOM05D004038 ORTHO05D004619 1.7e-244 849.4 590 73.4
Solyc12g017540.2 Solanum lycopersicum HOM05D004038 ORTHO05D004619 3.9e-244 848.2 594 73.1
Duzib106G0840 Durio zibethinus HOM05D004038 ORTHO05D004619 5.1e-244 847.8 577 74.4
MBI07_g27881_MAGBIO Magnolia biondii HOM05D004038 ORTHO05D004619 8.7e-244 847.0 580 74.0
Potri.007G146500 Populus trichocarpa HOM05D004038 ORTHO05D004619 8.7e-244 847.0 599 72.8
vmacro00732 Vaccinium macrocarpon HOM05D004038 ORTHO05D004619 1.1e-243 846.7 595 72.9
Migut.O00491 Erythranthe guttata HOM05D004038 ORTHO05D004619 1.5e-243 846.3 581 75.2
Sc19g0002460 Simmondsia chinensis HOM05D004038 ORTHO05D004619 1.5e-243 846.3 580 74.0
TAR636G2134 Trochodendron aralioides HOM05D004038 ORTHO05D004619 1.5e-243 846.3 574 73.9
Rhsim09G0001600 Rhododendron simsii HOM05D004038 ORTHO05D004619 1.9e-243 845.9 601 72.4
FAN26G0143 Fragaria x ananassa HOM05D004038 ORTHO05D004619 2.5e-243 845.5 580 75.2
Peaxi162Scf00057g00179 Petunia axillaris HOM05D004038 ORTHO05D004619 2.5e-243 845.5 546 77.8
RcHm_v2.0_Chr2g0084351 Rosa chinensis HOM05D004038 ORTHO05D004619 3.3e-243 845.1 576 74.8
Duzib093G1419 Durio zibethinus HOM05D004038 ORTHO05D004619 7.3e-243 844.0 575 75.0
Aqoxy2G04186 Aquilegia oxysepala HOM05D004038 ORTHO05D004619 9.6e-243 843.6 574 73.3
MD15G1142000 Malus domestica HOM05D004038 ORTHO05D004619 9.6e-243 843.6 590 72.9
COL.COLO4_14407 Corchorus olitorius HOM05D004038 ORTHO05D004619 4.8e-242 841.3 575 74.4
Gohir.D13G095500 Gossypium hirsutum HOM05D004038 ORTHO05D004619 8.1e-242 840.5 577 74.5
PGSC0003DMG402006465 Solanum tuberosum HOM05D004038 ORTHO05D004619 1.4e-241 839.7 603 71.6
Gorai.001G247600 Gossypium raimondii HOM05D004038 ORTHO05D004619 2.4e-241 839.0 577 74.4
Sopen12g008310 Solanum pennellii HOM05D004038 ORTHO05D004619 2.4e-241 839.0 595 72.8
MBI10_g31866_MAGBIO Magnolia biondii HOM05D004038 ORTHO05D004619 5.3e-241 837.8 579 73.9
VMungo1215G2173 Vigna mungo HOM05D004038 ORTHO05D004619 4.5e-240 834.7 577 73.5
Hund12302 Selenicereus undatus HOM05D004038 ORTHO05D004619 9.9e-240 833.6 574 73.5
Gohir.A13G079100 Gossypium hirsutum HOM05D004038 ORTHO05D004619 1.7e-239 832.8 577 73.8
Potri.017G001300 Populus trichocarpa HOM05D004038 ORTHO05D004619 2.2e-239 832.4 599 71.6
DCAR_023794 Daucus carota HOM05D004038 ORTHO05D004619 6.4e-239 830.9 542 76.4
Phvul.003G074400 Phaseolus vulgaris HOM05D004038 ORTHO05D004619 1.4e-238 829.7 577 73.3
Glyma.17G000500 Glycine max HOM05D004038 ORTHO05D004619 3.2e-238 828.6 577 73.1
ClCG08G010220 Citrullus lanatus HOM05D004038 ORTHO05D004619 5.4e-238 827.8 597 71.5
Glyma.07G273900 Glycine max HOM05D004038 ORTHO05D004619 2.3e-236 822.4 577 72.6
MELO3C011438.2 Cucumis melo HOM05D004038 ORTHO05D004619 3.0e-236 822.0 597 71.0
AUR62023688 Chenopodium quinoa HOM05D004038 ORTHO05D004619 8.7e-236 820.5 573 72.6
SalBow3G0041 Salvia bowleyana HOM05D004038 ORTHO05D004619 8.7e-236 820.5 596 70.6
PSO170G2946 Papaver somniferum HOM05D004038 ORTHO05D004619 2.5e-235 818.9 590 72.2
PSO357G0424 Papaver somniferum HOM05D004038 ORTHO05D004619 4.3e-235 818.1 590 72.2
CsaV3_6G032420 Cucumis sativus L. HOM05D004038 ORTHO05D004619 5.6e-235 817.8 597 70.7
CANSAT56G2502 Cannabis sativa HOM05D004038 ORTHO05D004619 1.3e-234 816.6 518 79.2
Sed0003085 Sechium edule HOM05D004038 ORTHO05D004619 2.8e-234 815.5 576 71.9
Lj4g0009662 Lotus japonicus HOM05D004038 ORTHO05D004619 8.1e-234 813.9 577 72.1
Ca_13541_v3 Cicer arietinum L. HOM05D004038 ORTHO05D004619 4.9e-231 804.7 577 71.2
Lalb_Chr13g0304471 Lupinus albus HOM05D004038 ORTHO05D004619 4.2e-230 801.6 580 71.0
Aa31LG1G25740 Aethionema arabicum HOM05D004038 ORTHO05D004619 7.1e-230 800.8 603 68.0
Thhalv10001361m.g Eutrema salsugineum HOM05D004038 ORTHO05D004619 7.1e-230 800.8 609 68.0
THA.LOC104802352 Tarenaya hassleriana HOM05D004038 ORTHO05D004619 9.3e-230 800.4 601 70.2
Ah.07g203340 Amaranthus hybridus HOM05D004038 ORTHO05D004619 2.1e-229 799.3 576 70.7
Medtr4g134960 Medicago truncatula HOM05D004038 ORTHO05D004619 3.9e-228 795.0 599 68.6
Sp4g26170 Schrenkiella parvula HOM05D004038 ORTHO05D004619 9.6e-227 790.4 585 70.1
EL10Ac3g06184 Beta vulgaris HOM05D004038 ORTHO05D004619 3.1e-225 785.4 646 64.2
Psat4g001200 Pisum sativum HOM05D004038 ORTHO05D004619 5.3e-225 784.6 519 75.3
AT3G59910 Arabidopsis thaliana HOM05D004038 ORTHO05D004619 6.9e-225 784.3 578 70.8
unitig_27.g25138 Utricularia gibba HOM05D004038 ORTHO05D004619 1.5e-224 783.1 543 73.5
CARHR170240 Cardamine hirsuta HOM05D004038 ORTHO05D004619 7.6e-224 780.8 592 68.9
AL5G42070 Arabidopsis lyrata HOM05D004038 ORTHO05D004619 1.3e-223 780.0 578 70.8
BraA05t19406Z Brassica rapa HOM05D004038 ORTHO05D004619 1.7e-223 779.6 603 68.0
Migut.G00797 Erythranthe guttata HOM05D004038 ORTHO05D004619 1.7e-223 779.6 600 67.3
AT2G44090 Arabidopsis thaliana HOM05D004038 ORTHO05D004619 4.9e-223 778.1 534 73.8
A05p04210 Brassica napus HOM05D004038 ORTHO05D004619 6.5e-223 777.7 582 69.1
BcaB02g08921 Brassica carinata HOM05D004038 ORTHO05D004619 4.2e-222 775.0 528 73.3
Carub.0005s2665 Capsella rubella HOM05D004038 ORTHO05D004619 2.7e-221 772.3 578 70.4
C04p04970 Brassica napus HOM05D004038 ORTHO05D004619 4.6e-221 771.5 582 68.4
Thhalv10005846m.g Eutrema salsugineum HOM05D004038 ORTHO05D004619 1.3e-220 770.0 574 70.2
PGR042G1685 Punica granatum HOM05D004038 ORTHO05D004619 6.7e-220 767.7 598 65.9
BraA09t40655Z Brassica rapa HOM05D004038 ORTHO05D004619 1.1e-219 766.9 585 68.0
AUR62002499 Chenopodium quinoa HOM05D004038 ORTHO05D004619 1.9e-219 766.1 591 67.0
BcaC02g12341 Brassica carinata HOM05D004038 ORTHO05D004619 2.5e-219 765.8 578 68.2
BolC4t22128H Brassica oleracea HOM05D004038 ORTHO05D004619 2.5e-219 765.8 578 68.2
Nn7g37426 Nelumbo nucifera HOM05D004038 ORTHO05D004619 2.5e-219 765.8 514 75.1
BcaC07g40397 Brassica carinata HOM05D004038 ORTHO05D004619 3.3e-219 765.4 591 67.5
Ah.13g073130 Amaranthus hybridus HOM05D004038 ORTHO05D004619 1.6e-218 763.1 571 68.1
A09p52260 Brassica napus HOM05D004038 ORTHO05D004619 1.6e-218 763.1 585 67.7
Sp5g03260 Schrenkiella parvula HOM05D004038 ORTHO05D004619 3.7e-218 761.9 578 69.2
C08p34910 Brassica napus HOM05D004038 ORTHO05D004619 4.8e-218 761.5 585 68.0
Aa31LG10G14160 Aethionema arabicum HOM05D004038 ORTHO05D004619 2.0e-216 756.1 577 68.6
arahy.Tifrunner.gnm1.ann1.7FI9ND Arachis hypogaea HOM05D004038 ORTHO05D004619 2.0e-216 756.1 523 72.3
arahy.Tifrunner.gnm1.ann1.BTB9WU Arachis hypogaea HOM05D004038 ORTHO05D004619 2.0e-216 756.1 523 72.3
BcaC07g40545 Brassica carinata HOM05D004038 ORTHO05D004619 2.2e-215 752.7 585 67.2
BolC8t51093H Brassica oleracea HOM05D004038 ORTHO05D004619 2.2e-215 752.7 585 67.2
MD02G1000800 Malus domestica HOM05D004038 ORTHO05D004619 1.9e-214 749.6 577 68.3
AL4G42970 Arabidopsis lyrata HOM05D004038 ORTHO05D004619 3.2e-214 748.8 601 66.1
BcaC02g07135 Brassica carinata HOM05D004038 ORTHO05D004619 1.7e-210 736.5 524 70.8
Lsat_1_v5_gn_1_77161 Lactuca sativa HOM05D004038 ORTHO05D004619 8.2e-210 734.2 535 71.4
Rhsim09G0010000 Rhododendron simsii HOM05D004038 ORTHO05D004619 6.9e-209 731.1 546 70.0
SGA_v2.0_scaffold19G08904 Striga asiatica HOM05D004038 ORTHO05D004619 3.4e-208 728.8 539 71.1
CDE09G0082 Ceratophyllum demersum HOM05D004038 ORTHO05D004619 1.7e-207 726.5 537 67.4
CDE08G0097 Ceratophyllum demersum HOM05D004038 ORTHO05D004619 1.1e-206 723.8 542 69.4
Cc03_g15910 Coffea canephora HOM05D004038 ORTHO05D004619 2.5e-206 722.6 419 86.2
SEGI_02142 Sequoiadendron giganteum HOM05D004038 ORTHO05D004619 1.3e-202 710.3 536 68.7
Os11g0246900 Oryza sativa ssp. japonica HOM05D004038 ORTHO05D004619 2.2e-202 709.5 528 67.4
HPP92_001964 Vanilla planifolia HOM05D004038 ORTHO05D004619 6.3e-202 708.0 528 68.6
ATR0743G108 Amborella trichopoda HOM05D004038 ORTHO05D004619 1.8e-201 706.4 576 63.2
TPR.G5970 Trifolium pratense HOM05D004038 ORTHO05D004619 9.1e-201 704.1 487 72.9
ATR0225G045 Amborella trichopoda HOM05D004038 ORTHO05D004619 4.5e-200 701.8 520 69.2
Zm00001eb168270 Zea mays HOM05D004038 ORTHO05D004619 2.5e-198 696.0 519 66.1
SalBow6G2055 Salvia bowleyana HOM05D004038 ORTHO05D004619 4.2e-198 695.3 414 83.6
Oeu050303.2 Olea europaea HOM05D004038 ORTHO05D004619 2.6e-195 686.0 416 82.9
ECA248G0282 Erigeron canadensis HOM05D004038 ORTHO05D004619 2.2e-191 672.9 586 62.6
HPP92_004656 Vanilla planifolia HOM05D004038 ORTHO05D004619 3.2e-190 669.1 614 59.1
Pp3c23_11480 Physcomitrium patens HOM05D004038 ORTHO05D004619 2.3e-188 662.9 576 60.9
FAN23G2340 Fragaria x ananassa HOM05D004038 ORTHO05D004619 2.0e-187 659.8 407 81.1
Mapoly0053s0086 Marchantia polymorpha HOM05D004038 ORTHO05D004619 1.7e-186 656.8 548 63.0
Pp3c20_17330 Physcomitrium patens HOM05D004038 ORTHO05D004619 8.2e-186 654.4 529 63.5
Pp3c24_10000 Physcomitrium patens HOM05D004038 ORTHO05D004619 1.8e-185 653.3 537 63.3
AagrBONN_evm.TU.Sc2ySwM_344.984 Anthoceros agrestis HOM05D004038 ORTHO05D004619 3.0e-180 636.0 513 64.1
Pp3c23_5610 Physcomitrium patens HOM05D004038 ORTHO05D004619 7.5e-179 631.3 529 61.6
SMO361G0247 Selaginella moellendorffii HOM05D004038 ORTHO05D004619 2.8e-178 629.4 495 65.1
SMO266G0055 Selaginella moellendorffii HOM05D004038 ORTHO05D004619 3.5e-176 622.5 534 61.2
Zm00001eb244150 Zea mays HOM05D004038 ORTHO05D004619 1.2e-160 570.9 579 52.5
Actinidia34559 Actinidia chinensis HOM05D004038 ORTHO05D004619 4.0e-156 555.8 445 67.4
CARHR139240 Cardamine hirsuta HOM05D004038 ORTHO05D004619 4.9e-154 548.9 410 69.8
Os02g0562400 Oryza sativa ssp. japonica HOM05D004038 ORTHO05D004619 7.0e-153 545.0 481 58.0
MD01G1124800 Malus domestica HOM05D004038 ORTHO05D004619 3.5e-152 542.7 524 57.3
CDE02G2909 Ceratophyllum demersum HOM05D004038 ORTHO05D004619 4.9e-130 469.2 465 55.5
Nn1g09401 Nelumbo nucifera HOM05D004038 ORTHO05D004619 2.5e-118 430.3 315 70.8
FAN23G0195 Fragaria x ananassa HOM05D004038 ORTHO05D004619 6.9e-116 422.2 329 68.4
Carub.0004s2664 Capsella rubella HOM05D004038 ORTHO05D004619 1.0e-98 365.2 259 69.9
PGSC0003DMG401006465 Solanum tuberosum HOM05D004038 ORTHO05D004619 5.5e-65 253.1 157 80.9
BcaB02g10668 Brassica carinata HOM05D004038 ORTHO05D004619 3.4e-62 243.8 145 84.8
C04p70890 Brassica napus HOM05D000190 ORTHO05D000113 1.5e-54 218.4 194 60.8
BolC4t28590H Brassica oleracea HOM05D000190 ORTHO05D000113 2.4e-52 211.1 194 58.8
A04p33200 Brassica napus HOM05D000190 ORTHO05D000113 2.7e-51 207.6 160 65.0
BraA04t18779Z Brassica rapa HOM05D000190 ORTHO05D000113 1.7e-50 204.9 160 64.4
Oeu038224.1 Olea europaea HOM05D003383 ORTHO05D003890 3.5e-35 154.1 131 61.8
FvH4_6g21450 Fragaria vesca HOM05D004038 ORTHO05D004619 1.0e-34 152.5 98 77.6
ATR1120G077 Amborella trichopoda HOM05D004884 ORTHO05D005873 7.3e-25 119.8 90 63.3
ATR0115G008 Amborella trichopoda HOM05D004038 ORTHO05D004619 1.8e-23 115.2 90 61.1
Pp3c14_7650 Physcomitrium patens HOM05D004038 ORTHO05D004619 1.5e-22 112.1 518 24.7
Pp3c1_34260 Physcomitrium patens HOM05D004038 ORTHO05D004619 5.4e-20 103.6 302 28.5
CBR_g40501 Chara braunii HOM05D004038 ORTHO05D004619 1.0e-18 99.4 123 43.1
Oeu023156.1 Olea europaea HOM05D004038 ORTHO05D004619 5.1e-18 97.1 141 45.4
FvH4_5g21451 Fragaria vesca HOM05D004038 ORTHO05D004619 3.3e-17 94.4 60 80.0
Pp3c10_11360 Physcomitrium patens HOM05D004038 ORTHO05D004619 6.2e-16 90.1 187 32.1
Pp3c1_7290 Physcomitrium patens HOM05D004038 ORTHO05D004619 3.1e-15 87.8 197 36.0
SGA_v2.0_scaffold158G37520 Striga asiatica HOM05D004038 ORTHO05D004619 1.5e-14 85.5 86 53.5
SGA_v2.0_scaffold18G08543 Striga asiatica HOM05D004038 ORTHO05D004619 1.3e-13 82.4 85 58.8
SGA_v2.0_scaffold10G05092 Striga asiatica HOM05D020555 ORTHO05D004619 3.8e-13 80.9 71 67.6
ATR0665G114 Amborella trichopoda HOM05D004038 ORTHO05D004619 8.7e-10 69.7 65 56.9
SHI01462 Sapria himalayana HOM05D004038 ORTHO05D004619 1.1e-07 62.8 54 55.6


User provided reference genes

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