Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc03_g15250 Coffea canephora HOM05D005890 ORTHO05D006717 3.1e-266 921.4 523 100.0
Dinv41195 Davidia involucrata HOM05D005890 ORTHO05D006717 4.0e-80 303.1 611 39.1
Dinv25461 Davidia involucrata HOM05D005890 ORTHO05D006717 4.2e-77 293.1 553 43.0
MSTRG.26556 Avicennia marina HOM05D005890 ORTHO05D006717 3.8e-62 243.4 493 37.5
Nitab4.5_0000028g0410 Nicotiana tabacum HOM05D005890 ORTHO05D006717 1.4e-61 241.5 491 41.3
Hma1.2p1_0235F.1_g098760 Hydrangea macrophylla HOM05D005890 ORTHO05D006717 1.9e-61 241.1 551 35.9
Peaxi162Scf00046g00417 Petunia axillaris HOM05D005890 ORTHO05D006717 9.4e-61 238.8 486 39.3
CAN.G403.1 Capsicum annuum HOM05D005890 ORTHO05D006717 7.9e-60 235.7 487 37.0
DCAR_018014 Daucus carota HOM05D005890 ORTHO05D006717 1.5e-58 231.5 480 37.5
Nitab4.5_0004916g0020 Nicotiana tabacum HOM05D005890 ORTHO05D006717 1.1e-56 225.3 478 40.0
PGSC0003DMG400019897 Solanum tuberosum HOM05D005890 ORTHO05D006717 4.1e-56 223.4 485 39.8
GSVIVG01029286001 Vitis vinifera HOM05D005890 ORTHO05D006717 1.5e-55 221.5 510 40.0
SGA_v2.0_scaffold41G15805 Striga asiatica HOM05D005890 ORTHO05D006717 2.6e-55 220.7 549 34.6
Duzib170G1164 Durio zibethinus HOM05D005890 ORTHO05D006717 7.7e-55 219.2 541 38.1
Eucgr.C02214 Eucalyptus grandis HOM05D005890 ORTHO05D006717 7.7e-55 219.2 488 39.5
Sopen07g004220 Solanum pennellii HOM05D005890 ORTHO05D006717 1.3e-54 218.4 477 41.1
Potri.018G140200 Populus trichocarpa HOM05D005890 ORTHO05D006717 3.8e-54 216.9 506 35.8
CSS0049336 Camellia sinensis var. sinensis HOM05D005890 ORTHO05D006717 1.1e-53 215.3 203 61.6
ClCG06G013720 Citrullus lanatus HOM05D005890 ORTHO05D006717 1.4e-53 214.9 502 36.5
Rhsim01G0114500 Rhododendron simsii HOM05D005890 ORTHO05D006717 5.5e-53 213.0 559 36.1
Solyc07g008330.3 Solanum lycopersicum HOM05D005890 ORTHO05D006717 5.5e-53 213.0 475 40.8
Nn8g40670 Nelumbo nucifera HOM05D005890 ORTHO05D006717 1.6e-52 211.5 592 34.8
Manes.06G017800 Manihot esculenta HOM05D005890 ORTHO05D006717 2.7e-52 210.7 514 36.6
TWI32G1283 Tripterygium wilfordii HOM05D005890 ORTHO05D006717 2.7e-52 210.7 514 35.6
MD16G1246300 Malus domestica HOM05D005890 ORTHO05D006717 2.3e-51 207.6 503 36.0
Actinidia02494 Actinidia chinensis HOM05D005890 ORTHO05D006717 1.1e-50 205.3 532 34.6
Cfa013466 Carpinus fangiana HOM05D005890 ORTHO05D006717 2.0e-50 204.5 516 34.5
ECA240G0208 Erigeron canadensis HOM05D005890 ORTHO05D006717 5.7e-50 203.0 507 36.5
HanXRQChr03g0065401 Helianthus annuus HOM05D005890 ORTHO05D006717 3.7e-49 200.3 494 37.4
FAN17G2561 Fragaria x ananassa HOM05D005890 ORTHO05D006717 4.8e-49 199.9 485 35.9
Prupe.1G073000 Prunus persica HOM05D005890 ORTHO05D006717 1.1e-48 198.7 500 34.6
QL07p048247 Quercus lobata HOM05D005890 ORTHO05D006717 1.1e-48 198.7 513 34.5
FAN07G1770 Fragaria x ananassa HOM05D005890 ORTHO05D006717 1.8e-48 198.0 489 35.2
SGA_v2.0_scaffold392G50652 Striga asiatica HOM05D005890 ORTHO05D006717 5.3e-48 196.4 202 57.4
Migut.L01872 Erythranthe guttata HOM05D005890 ORTHO05D006717 9.1e-48 195.7 477 34.8
Thecc.09G191500 Theobroma cacao HOM05D005890 ORTHO05D006717 9.1e-48 195.7 522 34.3
CsaV3_3G012070 Cucumis sativus L. HOM05D005890 ORTHO05D006717 1.5e-47 194.9 483 35.4
Oeu063100.1 Olea europaea HOM05D005890 ORTHO05D006717 2.6e-47 194.1 190 61.1
FAN12G2329 Fragaria x ananassa HOM05D005890 ORTHO05D006717 3.5e-47 193.7 492 32.7
CiPaw.07G198700 Carya illinoinensis HOM05D005890 ORTHO05D006717 4.5e-47 193.4 457 37.2
RcHm_v2.0_Chr4g0398981 Rosa chinensis HOM05D005890 ORTHO05D006717 4.5e-47 193.4 493 32.5
VMungo1215G0729 Vigna mungo HOM05D005890 ORTHO05D006717 4.5e-47 193.4 483 36.0
vmacro20806 Vaccinium macrocarpon HOM05D005890 ORTHO05D006717 7.7e-47 192.6 621 33.2
Ciclev10008727m.g Citrus clementina HOM05D005890 ORTHO05D006717 6.5e-46 189.5 206 57.3
MELO3C006422.2 Cucumis melo HOM05D005890 ORTHO05D006717 6.5e-46 189.5 488 34.6
Sed0014693 Sechium edule HOM05D005890 ORTHO05D006717 1.4e-45 188.3 513 33.9
CANSAT01G0113 Cannabis sativa HOM05D005890 ORTHO05D006717 4.2e-45 186.8 497 36.2
Glyma.17G058000 Glycine max HOM05D005890 ORTHO05D006717 2.1e-44 184.5 441 37.9
Sabra06G0054500 Salix brachista HOM05D005890 ORTHO05D006717 1.4e-43 181.8 502 34.9
PGR044G2166 Punica granatum HOM05D005890 ORTHO05D006717 2.3e-43 181.0 495 34.3
Aqoxy7G02888 Aquilegia oxysepala HOM05D005890 ORTHO05D006717 1.1e-42 178.7 336 40.8
HanXRQChr10g0308981 Helianthus annuus HOM05D005890 ORTHO05D006717 1.5e-42 178.3 440 37.5
Medtr4g127160 Medicago truncatula HOM05D005890 ORTHO05D006717 4.4e-42 176.8 492 37.2
TWI34G1560 Tripterygium wilfordii HOM05D005890 ORTHO05D006717 2.2e-41 174.5 462 36.6
Atru.BG.17.p Acer truncatum HOM05D005890 ORTHO05D006717 1.1e-40 172.2 478 35.6
arahy.Tifrunner.gnm1.ann1.V3N0NP Arachis hypogaea HOM05D005890 ORTHO05D006717 1.1e-40 172.2 165 60.6
Glyma.13G101600 Glycine max HOM05D005890 ORTHO05D006717 1.8e-40 171.4 495 35.4
arahy.Tifrunner.gnm1.ann1.CB00ZF Arachis hypogaea HOM05D005890 ORTHO05D006717 2.4e-40 171.0 165 60.0
Lsat_1_v5_gn_7_55781 Lactuca sativa HOM05D005890 ORTHO05D006717 4.1e-40 170.2 490 33.9
Potri.006G073100 Populus trichocarpa HOM05D005890 ORTHO05D006717 9.1e-40 169.1 527 32.8
Lj4g0027857 Lotus japonicus HOM05D005890 ORTHO05D006717 2.0e-39 167.9 488 35.0
AUR62027422 Chenopodium quinoa HOM05D005890 ORTHO05D006717 3.5e-39 167.2 495 35.8
Phvul.003G140452 Phaseolus vulgaris HOM05D005890 ORTHO05D006717 3.5e-39 167.2 488 34.0
unitig_8.g3553 Utricularia gibba HOM05D005890 ORTHO05D006717 3.5e-39 167.2 498 31.1
MBI18_g10586_MAGBIO Magnolia biondii HOM05D005890 ORTHO05D006717 4.5e-39 166.8 534 32.2
CDE02G0471 Ceratophyllum demersum HOM05D005890 ORTHO05D006717 5.9e-39 166.4 498 32.1
Lalb_Chr13g0299851 Lupinus albus HOM05D005890 ORTHO05D006717 5.9e-39 166.4 478 34.9
Gorai.012G008900 Gossypium raimondii HOM05D005890 ORTHO05D006717 2.9e-38 164.1 490 31.2
EL10Ac8g19296 Beta vulgaris HOM05D005890 ORTHO05D006717 8.5e-38 162.5 489 33.7
Atru.chr7.926 Acer truncatum HOM05D005890 ORTHO05D006717 1.5e-37 161.8 215 51.6
Sp6g18850 Schrenkiella parvula HOM05D005890 ORTHO05D006717 9.4e-37 159.1 495 32.9
ECA234G0353 Erigeron canadensis HOM05D005890 ORTHO05D006717 1.6e-36 158.3 440 36.1
Sed0024384 Sechium edule HOM05D005890 ORTHO05D006717 2.1e-36 157.9 454 33.3
Gohir.A05G408300 Gossypium hirsutum HOM05D005890 ORTHO05D006717 2.7e-36 157.5 487 33.5
PSO170G0082 Papaver somniferum HOM05D005890 ORTHO05D006717 2.7e-36 157.5 99 76.8
PSO063G0609 Papaver somniferum HOM05D005890 ORTHO05D006717 8.0e-36 156.0 99 75.8
THA.LOC104817770 Tarenaya hassleriana HOM05D005890 ORTHO05D006717 1.0e-35 155.6 488 33.0
Os12g0613500 Oryza sativa ssp. japonica HOM05D005890 ORTHO05D006717 1.8e-35 154.8 438 35.6
Lsat_1_v5_gn_5_83860 Lactuca sativa HOM05D005890 ORTHO05D006717 2.3e-35 154.5 442 35.5
TAR637G0001 Trochodendron aralioides HOM05D005890 ORTHO05D006717 3.0e-35 154.1 87 85.1
THA.LOC104813501 Tarenaya hassleriana HOM05D005890 ORTHO05D006717 4.0e-35 153.7 444 36.9
ATR1098G092 Amborella trichopoda HOM05D005890 ORTHO05D006717 8.8e-35 152.5 333 41.4
Ah.14g085350 Amaranthus hybridus HOM05D005890 ORTHO05D006717 4.4e-34 150.2 479 30.1
Ca_21262_v3 Cicer arietinum L. HOM05D005890 ORTHO05D006717 4.4e-34 150.2 108 71.3
AUR62031274 Chenopodium quinoa HOM05D005890 ORTHO05D006717 8.3e-33 146.0 222 46.4
SEGI_20539 Sequoiadendron giganteum HOM05D005890 ORTHO05D006717 8.3e-33 146.0 133 60.9
Hund24378 Selenicereus undatus HOM05D005890 ORTHO05D006717 1.8e-32 144.8 516 31.4
HPP92_018699 Vanilla planifolia HOM05D005890 ORTHO05D006717 1.8e-32 144.8 469 32.0
Cpa.g.sc115.65 Carica papaya HOM05D005890 ORTHO05D006717 3.1e-32 144.1 183 51.4
CDE05G3513 Ceratophyllum demersum HOM05D005890 ORTHO05D006717 5.3e-32 143.3 200 50.0
Psat4g014480 Pisum sativum HOM05D005890 ORTHO05D006717 1.6e-31 141.7 186 51.1
Aa31LG3G13020 Aethionema arabicum HOM05D005890 ORTHO05D006717 2.0e-31 141.4 490 31.6
BcaB08g36002 Brassica carinata HOM05D005890 ORTHO05D006717 2.0e-31 141.4 121 62.8
A02p08710 Brassica napus HOM05D005890 ORTHO05D006717 2.7e-31 141.0 131 61.1
BraA02t05941Z Brassica rapa HOM05D005890 ORTHO05D006717 3.5e-31 140.6 131 61.1
BcaC03g14182 Brassica carinata HOM05D005890 ORTHO05D006717 4.5e-31 140.2 117 66.7
C02p14590 Brassica napus HOM05D005890 ORTHO05D006717 4.5e-31 140.2 117 66.7
BolC2t07586H Brassica oleracea HOM05D005890 ORTHO05D006717 4.5e-31 140.2 117 66.7
Pp3c3_34440 Physcomitrium patens HOM05D005890 ORTHO05D006717 4.5e-31 140.2 164 51.8
Pp3c3_34441 Physcomitrium patens HOM05D005890 ORTHO05D006717 4.5e-31 140.2 164 51.8
Thhalv10013871m.g Eutrema salsugineum HOM05D005890 ORTHO05D006717 2.2e-30 137.9 488 32.4
Zm00001eb136110 Zea mays HOM05D005890 ORTHO05D006717 2.9e-30 137.5 203 46.8
BcaC04g20011 Brassica carinata HOM05D005890 ORTHO05D006717 1.1e-29 135.6 122 60.7
CSS0049604 Camellia sinensis var. sinensis HOM05D005890 ORTHO05D006717 2.1e-28 131.3 332 38.0
TPR.G5393 Trifolium pratense HOM05D005890 ORTHO05D006717 4.7e-28 130.2 481 34.9
CARHR270890 Cardamine hirsuta HOM05D005890 ORTHO05D006717 6.1e-28 129.8 128 60.2
MBI14_g15782_MAGBIO Magnolia biondii HOM05D005890 ORTHO05D006717 1.8e-27 128.3 213 42.7
BcaB05g22318 Brassica carinata HOM05D005890 ORTHO05D006717 2.6e-26 124.4 487 30.6
C09p48820 Brassica napus HOM05D005890 ORTHO05D006717 4.4e-26 123.6 216 40.3
BolC9t57729H Brassica oleracea HOM05D005890 ORTHO05D006717 4.4e-26 123.6 216 40.3
Mapoly0009s0141 Marchantia polymorpha HOM05D005890 ORTHO05D006717 1.3e-25 122.1 107 59.8
COL.COLO4_08570 Corchorus olitorius HOM05D005890 ORTHO05D006717 2.8e-25 120.9 603 27.2
Haze_22044 Corylus avellana HOM05D005890 ORTHO05D006717 9.1e-24 115.9 148 50.0
AagrBONN_evm.TU.Sc2ySwM_368.973 Anthoceros agrestis HOM05D005890 ORTHO05D006717 4.5e-23 113.6 214 39.3
AL8G33040 Arabidopsis lyrata HOM05D005890 ORTHO05D006717 1.3e-22 112.1 102 64.7
AT5G57120 Arabidopsis thaliana HOM05D005890 ORTHO05D006717 2.3e-22 111.3 102 62.7
CBR_g20282 Chara braunii HOM05D000019 ORTHO05D000002 2.9e-22 110.9 72 73.6
SMO337G0105 Selaginella moellendorffii HOM05D004944 ORTHO05D005989 3.8e-22 110.5 85 68.2
Zm00001eb172010 Zea mays HOM05D005890 ORTHO05D006717 8.6e-22 109.4 203 39.9
MD13G1240600 Malus domestica HOM05D005890 ORTHO05D006717 2.8e-20 104.4 469 27.9
Carub.0008s1762 Capsella rubella HOM05D005890 ORTHO05D006717 6.1e-20 103.2 98 62.2
SEGI_22268 Sequoiadendron giganteum HOM05D005890 ORTHO05D006717 1.0e-19 102.4 60 81.7
Sabra18G0114500 Salix brachista HOM05D005890 ORTHO05D006717 2.3e-19 101.3 446 29.8
FvH4_4g06950 Fragaria vesca HOM05D005890 ORTHO05D006717 1.5e-18 98.6 436 25.9
CiPaw.08G031700 Carya illinoinensis HOM05D005890 ORTHO05D006717 6.1e-12 76.6 480 26.5
DCAR_029041 Daucus carota HOM05D005890 ORTHO05D006717 1.4e-11 75.5 177 35.6
Cre01.g055400 Chlamydomonas reinhardtii HOM05D005890 ORTHO05D006717 1.2e-10 72.4 97 53.6
Zm00001eb394450 Zea mays HOM05D014690 ORTHO05D006717 1.5e-10 72.0 52 65.4
MCO09G065 Micromonas commoda HOM05D005890 ORTHO05D006717 4.9e-09 67.0 81 56.8
Oeu003868.2 Olea europaea HOM05D005890 ORTHO05D006717 8.3e-09 66.2 210 33.3
A10p14440 Brassica napus HOM05D005890 ORTHO05D006717 1.4e-08 65.5 35 85.7
BraA10t43535Z Brassica rapa HOM05D005890 ORTHO05D006717 1.4e-08 65.5 35 85.7
DCAR_001127 Daucus carota HOM05D000703 ORTHO05D006717 1.6e-07 62.0 78 47.4
CSS0038668 Camellia sinensis var. sinensis HOM05D014000 ORTHO05D006717 3.5e-07 60.8 90 43.3
Cpa.g.c33129.1 Carica papaya HOM05D005890 ORTHO05D006717 3.5e-07 60.8 96 39.6
MBI14_g15781_MAGBIO Magnolia biondii HOM05D005890 ORTHO05D006717 8.6e-06 56.2 136 26.5


User provided reference genes

Program Settings