Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc03_g15080 Coffea canephora HOM05D002799 ORTHO05D007076 1.4e-245 852.4 415 100.0
Dinv17267 Davidia involucrata HOM05D002799 ORTHO05D007076 7.7e-143 511.1 431 60.8
CSS0010295 Camellia sinensis var. sinensis HOM05D002799 ORTHO05D007076 7.8e-135 484.6 442 57.9
CAN.G289.47 Capsicum annuum HOM05D002799 ORTHO05D007076 8.6e-134 481.1 431 58.5
GSVIVG01024449001 Vitis vinifera HOM05D002799 ORTHO05D007076 1.8e-131 473.4 410 60.0
Actinidia08737 Actinidia chinensis HOM05D002799 ORTHO05D007076 2.3e-131 473.0 422 58.5
MSTRG.11401 Avicennia marina HOM05D002799 ORTHO05D007076 2.6e-130 469.5 421 58.9
QL09p025824 Quercus lobata HOM05D002799 ORTHO05D007076 9.2e-128 461.1 438 56.4
TAR374G0973 Trochodendron aralioides HOM05D002799 ORTHO05D007076 6.0e-127 458.4 362 62.7
SalBow5G5430 Salvia bowleyana HOM05D002799 ORTHO05D007076 2.3e-126 456.4 357 64.4
CiPaw.05G237100 Carya illinoinensis HOM05D002799 ORTHO05D007076 8.6e-126 454.5 430 57.0
Prupe.2G323900 Prunus persica HOM05D002799 ORTHO05D007076 1.9e-125 453.4 387 61.2
MD01G1233700 Malus domestica HOM05D002799 ORTHO05D007076 2.5e-125 453.0 393 60.3
Atru.chr12.2008 Acer truncatum HOM05D002799 ORTHO05D007076 7.3e-125 451.4 333 68.8
Ciclev10001355m.g Citrus clementina HOM05D002799 ORTHO05D007076 7.3e-125 451.4 324 69.8
Thhalv10002559m.g Eutrema salsugineum HOM05D002799 ORTHO05D007076 1.2e-124 450.7 325 67.4
COL.COLO4_24619 Corchorus olitorius HOM05D002799 ORTHO05D007076 2.1e-124 449.9 354 63.8
Eucgr.K00095 Eucalyptus grandis HOM05D002799 ORTHO05D007076 2.1e-124 449.9 341 65.4
Thecc.08G172500 Theobroma cacao HOM05D002799 ORTHO05D007076 2.1e-124 449.9 327 68.8
Manes.08G164400 Manihot esculenta HOM05D002799 ORTHO05D007076 8.1e-124 448.0 388 60.3
PGSC0003DMG400012810 Solanum tuberosum HOM05D002799 ORTHO05D007076 3.1e-123 446.0 426 56.8
Gorai.006G053300 Gossypium raimondii HOM05D002799 ORTHO05D007076 4.0e-123 445.7 373 62.7
Duzib211G0014 Durio zibethinus HOM05D002799 ORTHO05D007076 1.2e-122 444.1 355 63.4
Gohir.D09G053900 Gossypium hirsutum HOM05D002799 ORTHO05D007076 1.2e-122 444.1 372 62.1
Solyc03g006460.4 Solanum lycopersicum HOM05D002799 ORTHO05D007076 1.2e-122 444.1 424 56.6
Potri.015G079500 Populus trichocarpa HOM05D002799 ORTHO05D007076 7.5e-122 441.4 322 67.7
vmacro06500 Vaccinium macrocarpon HOM05D002799 ORTHO05D007076 7.5e-122 441.4 328 66.5
Sopen03g002460 Solanum pennellii HOM05D002799 ORTHO05D007076 9.8e-122 441.0 417 56.8
AT2G04940 Arabidopsis thaliana HOM05D002799 ORTHO05D007076 4.9e-121 438.7 314 67.5
C03p55340 Brassica napus HOM05D002799 ORTHO05D007076 4.9e-121 438.7 317 68.5
Gohir.A09G055000 Gossypium hirsutum HOM05D002799 ORTHO05D007076 4.9e-121 438.7 323 68.1
BcaC01g03181 Brassica carinata HOM05D002799 ORTHO05D007076 6.4e-121 438.3 317 68.5
BolC3t17806H Brassica oleracea HOM05D002799 ORTHO05D007076 6.4e-121 438.3 317 68.5
Carub.0003s2662 Capsella rubella HOM05D002799 ORTHO05D007076 1.1e-120 437.6 330 64.8
AL3G42700 Arabidopsis lyrata HOM05D002799 ORTHO05D007076 2.4e-120 436.4 332 65.1
CARHR102970 Cardamine hirsuta HOM05D002799 ORTHO05D007076 2.4e-120 436.4 331 65.0
Lalb_Chr03g0024441 Lupinus albus HOM05D002799 ORTHO05D007076 3.2e-120 436.0 321 67.3
Lj3g0008833 Lotus japonicus HOM05D002799 ORTHO05D007076 2.1e-119 433.3 317 68.8
Lj1C1032G6 Lonicera japonica HOM05D002799 ORTHO05D007076 2.7e-119 433.0 428 56.1
Sp3g23560 Schrenkiella parvula HOM05D002799 ORTHO05D007076 4.6e-119 432.2 318 67.3
TWI34G0554 Tripterygium wilfordii HOM05D002799 ORTHO05D007076 4.6e-119 432.2 365 63.6
A03p44540 Brassica napus HOM05D002799 ORTHO05D007076 7.8e-119 431.4 317 67.8
BraA03t13587Z Brassica rapa HOM05D002799 ORTHO05D007076 7.8e-119 431.4 317 67.8
THA.LOC104815357 Tarenaya hassleriana HOM05D002799 ORTHO05D007076 1.3e-118 430.6 348 63.2
BcaB08g34494 Brassica carinata HOM05D002799 ORTHO05D007076 2.3e-118 429.9 353 63.2
Nn1g02009 Nelumbo nucifera HOM05D002799 ORTHO05D007076 3.0e-118 429.5 326 66.3
FAN03G1078 Fragaria x ananassa HOM05D002799 ORTHO05D007076 1.1e-117 427.6 311 66.2
CsaV3_4G004510 Cucumis sativus L. HOM05D002799 ORTHO05D007076 3.3e-117 426.0 358 62.3
Oeu014983.2 Olea europaea HOM05D002799 ORTHO05D007076 3.3e-117 426.0 386 58.0
FvH4_7g33590 Fragaria vesca HOM05D002799 ORTHO05D007076 5.6e-117 425.2 330 63.9
FAN10G3482 Fragaria x ananassa HOM05D002799 ORTHO05D007076 7.3e-117 424.9 314 65.6
PGR004G1694 Punica granatum HOM05D002799 ORTHO05D007076 9.5e-117 424.5 408 56.6
arahy.Tifrunner.gnm1.ann1.IZ2599 Arachis hypogaea HOM05D002799 ORTHO05D007076 2.1e-116 423.3 317 67.5
arahy.Tifrunner.gnm1.ann1.ZMX436 Arachis hypogaea HOM05D002799 ORTHO05D007076 2.1e-116 423.3 317 67.5
CANSAT21G1863 Cannabis sativa HOM05D002799 ORTHO05D007076 2.1e-116 423.3 331 64.7
Medtr4g077510 Medicago truncatula HOM05D002799 ORTHO05D007076 3.6e-116 422.5 315 67.9
Phvul.011G021500 Phaseolus vulgaris HOM05D002799 ORTHO05D007076 4.7e-116 422.2 320 66.6
Glyma.12G019100 Glycine max HOM05D002799 ORTHO05D007076 8.1e-116 421.4 322 66.1
MD07G1305800 Malus domestica HOM05D002799 ORTHO05D007076 8.1e-116 421.4 385 57.4
VMungo1127G2112 Vigna mungo HOM05D002799 ORTHO05D007076 1.1e-115 421.0 312 67.9
ATR0829G228 Amborella trichopoda HOM05D002799 ORTHO05D007076 1.4e-115 420.6 325 63.1
Migut.I00118 Erythranthe guttata HOM05D002799 ORTHO05D007076 2.3e-115 419.9 335 63.0
FAN10G0267 Fragaria x ananassa HOM05D002799 ORTHO05D007076 3.1e-115 419.5 312 64.7
Ca_29855_v3 Cicer arietinum L. HOM05D002799 ORTHO05D007076 4.0e-115 419.1 342 64.9
Sed0006194 Sechium edule HOM05D002799 ORTHO05D007076 1.2e-114 417.5 332 64.5
Aa31LG3G2760 Aethionema arabicum HOM05D002799 ORTHO05D007076 2.6e-114 416.4 310 66.5
EL10Ac3g05098 Beta vulgaris HOM05D002799 ORTHO05D007076 4.4e-114 415.6 337 60.5
PSO782G0547 Papaver somniferum HOM05D002799 ORTHO05D007076 1.7e-113 413.7 342 61.1
RcHm_v2.0_Chr1g0383851 Rosa chinensis HOM05D002799 ORTHO05D007076 1.7e-113 413.7 252 76.2
FAN01G1859 Fragaria x ananassa HOM05D002799 ORTHO05D007076 4.9e-113 412.1 306 64.4
MBI04_g21139_MAGBIO Magnolia biondii HOM05D002799 ORTHO05D007076 8.4e-113 411.4 316 63.9
PSO063G7569 Papaver somniferum HOM05D002799 ORTHO05D007076 2.4e-112 409.8 334 62.0
Ca_04931_v3 Cicer arietinum L. HOM05D002799 ORTHO05D007076 4.1e-112 409.1 331 65.3
AUR62028151 Chenopodium quinoa HOM05D002799 ORTHO05D007076 5.4e-112 408.7 316 63.3
Ah.13g072670 Amaranthus hybridus HOM05D002799 ORTHO05D007076 1.6e-111 407.1 313 64.2
CDE01G0680 Ceratophyllum demersum HOM05D000526 ORTHO05D000956 1.0e-110 404.4 329 63.5
ECA233G3743 Erigeron canadensis HOM05D002799 ORTHO05D007076 4.3e-109 399.1 316 64.2
HanXRQChr04g0105251 Helianthus annuus HOM05D002799 ORTHO05D007076 2.1e-108 396.7 330 62.1
Aqoxy3G02040 Aquilegia oxysepala HOM05D002799 ORTHO05D007076 2.8e-108 396.4 310 62.9
Hma1.2p1_0758F.1_g213600 Hydrangea macrophylla HOM05D002799 ORTHO05D007076 1.4e-107 394.0 245 76.3
DCAR_009002 Daucus carota HOM05D002799 ORTHO05D007076 2.4e-107 393.3 327 61.5
Lsat_1_v5_gn_8_3761 Lactuca sativa HOM05D002799 ORTHO05D007076 2.1e-103 380.2 330 59.1
ClCG07G017310 Citrullus lanatus HOM05D002799 ORTHO05D007076 1.1e-101 374.4 359 56.8
HPP92_015127 Vanilla planifolia HOM05D002799 ORTHO05D007076 1.1e-101 374.4 322 59.9
MELO3C017614.2 Cucumis melo HOM05D002799 ORTHO05D007076 9.6e-101 371.3 356 57.3
Lj2A621G40 Lonicera japonica HOM05D002799 ORTHO05D007076 2.4e-99 366.7 374 53.7
AUR62005914 Chenopodium quinoa HOM05D002799 ORTHO05D007076 1.3e-97 360.9 322 57.8
Zm00001eb430250 Zea mays HOM05D002799 ORTHO05D007076 3.2e-96 356.3 319 57.7
unitig_62.g23564 Utricularia gibba HOM05D002799 ORTHO05D007076 1.2e-95 354.4 325 58.2
Hund09770 Selenicereus undatus HOM05D002799 ORTHO05D007076 1.5e-93 347.4 350 53.4
Psat7g171360 Pisum sativum HOM05D002799 ORTHO05D007076 1.9e-93 347.1 322 59.6
Solyc03g006452.1 Solanum lycopersicum HOM05D002799 ORTHO05D007076 6.2e-92 342.0 302 59.3
Cpa.g.sc67.53 Carica papaya HOM05D002799 ORTHO05D007076 9.0e-91 338.2 191 78.5
Os04g0599400 Oryza sativa ssp. japonica HOM05D002799 ORTHO05D007076 1.5e-90 337.4 326 54.9
Os02g0238500 Oryza sativa ssp. japonica HOM05D002799 ORTHO05D007076 1.4e-88 330.9 229 69.0
AagrBONN_evm.TU.Sc2ySwM_368.1885 Anthoceros agrestis HOM05D002799 ORTHO05D007076 1.6e-87 327.4 352 50.6
Sc13g0010800 Simmondsia chinensis HOM05D002799 ORTHO05D007076 3.3e-85 319.7 273 59.3
Pp3c5_23880 Physcomitrium patens HOM05D002799 ORTHO05D007076 4.8e-84 315.8 281 55.5
Pp3c3_18900 Physcomitrium patens HOM05D002799 ORTHO05D007076 1.4e-83 314.3 335 50.1
Actinidia34299 Actinidia chinensis HOM05D002799 ORTHO05D007076 7.9e-79 298.5 190 74.2
Cfa015896 Carpinus fangiana HOM05D002799 ORTHO05D007076 1.7e-73 280.8 401 45.9
Mapoly0041s0072 Marchantia polymorpha HOM05D002799 ORTHO05D007076 5.0e-73 279.3 344 44.8
CBR_g26239 Chara braunii HOM05D002799 ORTHO05D007076 7.9e-71 271.9 294 46.3
SMO196G0267 Selaginella moellendorffii HOM05D002799 ORTHO05D007076 1.3e-65 254.6 196 58.7
Lj3A801T16 Lonicera japonica HOM05D002799 ORTHO05D007076 2.3e-62 243.8 226 53.1
Sabra15G0103700 Salix brachista HOM05D002799 ORTHO05D007076 1.5e-58 231.1 291 46.0
Zm00001eb071960 Zea mays HOM05D002799 ORTHO05D007076 1.8e-54 217.6 118 78.8
FvH4_7g33592 Fragaria vesca HOM05D002799 ORTHO05D007076 8.2e-52 208.8 122 77.9
Hma1.2p1_0758F.1_g213590 Hydrangea macrophylla HOM05D002799 ORTHO05D007076 3.1e-51 206.8 179 60.3
Haze_00592 Corylus avellana HOM05D002799 ORTHO05D007076 8.5e-49 198.7 275 45.5
FvH4_7g33593 Fragaria vesca HOM05D002799 ORTHO05D007076 7.2e-48 195.7 173 57.2
Sabra15G0103800 Salix brachista HOM05D002799 ORTHO05D007076 3.3e-45 186.8 114 78.1
PRCOL_00006278 Prasinoderma coloniale HOM05D002799 ORTHO05D007076 8.5e-41 172.2 270 39.6
Peaxi162Scf00195g01110 Petunia axillaris HOM05D002799 ORTHO05D007076 1.1e-40 171.8 110 75.5
Nitab4.5_0000793g0020 Nicotiana tabacum HOM05D002799 ORTHO05D007076 6.8e-38 162.5 233 42.9
Nitab4.5_0000701g0050 Nicotiana tabacum HOM05D002799 ORTHO05D007076 2.6e-37 160.6 289 38.8
SEGI_10035 Sequoiadendron giganteum HOM05D002799 ORTHO05D007076 5.4e-35 152.9 97 72.2
Nitab4.5_0000701g0060 Nicotiana tabacum HOM05D002799 ORTHO05D007076 5.9e-34 149.4 170 50.6
Cre06.g267850 Chlamydomonas reinhardtii HOM05D002799 ORTHO05D007076 2.9e-33 147.1 197 41.6
Nitab4.5_0000793g0030 Nicotiana tabacum HOM05D002799 ORTHO05D007076 3.4e-29 133.7 171 48.0
TPR.G19958 Trifolium pratense HOM05D002799 ORTHO05D007076 1.0e-25 122.1 62 85.5
Cfa023729 Carpinus fangiana HOM05D002799 ORTHO05D007076 1.6e-23 114.8 296 27.7
HanXRQChr15g0477781 Helianthus annuus HOM05D002799 ORTHO05D007076 6.1e-23 112.8 97 61.9
QL03p008982 Quercus lobata HOM05D000009 ORTHO05D000008 8.9e-22 109.0 219 37.0
Zm00001eb315690 Zea mays HOM05D002799 ORTHO05D007076 3.7e-20 103.6 55 76.4
TPR.G21490 Trifolium pratense HOM05D002799 ORTHO05D007076 1.3e-17 95.1 73 65.8
Actinidia04566 Actinidia chinensis HOM05D002799 ORTHO05D007076 8.6e-17 92.4 186 37.1
Haze_00593 Corylus avellana HOM05D002799 ORTHO05D007076 1.9e-16 91.3 61 73.8
Lj2C621T3 Lonicera japonica HOM05D002799 ORTHO05D007076 1.6e-15 88.2 61 68.9
FAN10G3554 Fragaria x ananassa HOM05D012649 ORTHO05D007076 6.2e-15 86.3 111 44.1
SEGI_38885 Sequoiadendron giganteum HOM05D002799 ORTHO05D007076 1.5e-13 81.6 78 52.6
QL03p009165 Quercus lobata HOM05D000009 ORTHO05D000008 2.7e-10 70.9 69 56.5
VMungo1127G1706 Vigna mungo HOM05D002799 ORTHO05D007076 6.0e-10 69.7 109 40.4
SHI36546 Sapria himalayana HOM05D000107 ORTHO05D000233 7.3e-08 62.8 34 85.3
Cpa.g.sc67.52 Carica papaya HOM05D002799 ORTHO05D007076 2.8e-07 60.8 177 28.2
SalBow8G2774 Salvia bowleyana HOM05D002799 ORTHO05D007076 6.2e-07 59.7 39 74.4
SHI38523 Sapria himalayana HOM05D000616 ORTHO05D000062 2.3e-06 57.8 124 37.9


User provided reference genes

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