Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc03_g14990 Coffea canephora HOM05D004131 ORTHO05D004778 1.0e-60 237.3 194 100.0
Dinv33225 Davidia involucrata HOM05D004131 ORTHO05D004778 9.2e-46 187.6 193 77.7
Potri.017G010100 Populus trichocarpa HOM05D004131 ORTHO05D004778 1.7e-44 183.3 111 82.9
unitig_8.g3637 Utricularia gibba HOM05D004131 ORTHO05D004778 2.3e-44 183.0 111 82.9
TWI38G2196 Tripterygium wilfordii HOM05D004131 ORTHO05D004778 3.0e-44 182.6 111 82.9
CDE08G0022 Ceratophyllum demersum HOM05D004131 ORTHO05D004778 3.9e-44 182.2 111 82.0
Sabra07G0113200 Salix brachista HOM05D004131 ORTHO05D004778 3.9e-44 182.2 111 82.0
Sabra07G0117600 Salix brachista HOM05D004131 ORTHO05D004778 3.9e-44 182.2 111 82.0
Cfa021469 Carpinus fangiana HOM05D004131 ORTHO05D004778 5.0e-44 181.8 111 81.1
Dinv18309 Davidia involucrata HOM05D004131 ORTHO05D004778 5.0e-44 181.8 111 82.0
Migut.G00833 Erythranthe guttata HOM05D004131 ORTHO05D004778 6.6e-44 181.4 111 82.9
TWI63G0908 Tripterygium wilfordii HOM05D004131 ORTHO05D004778 6.6e-44 181.4 111 82.0
CAN.G448.4 Capsicum annuum HOM05D004131 ORTHO05D004778 8.6e-44 181.0 196 80.1
Nitab4.5_0000064g0030 Nicotiana tabacum HOM05D004131 ORTHO05D004778 8.6e-44 181.0 105 84.8
Nitab4.5_0005089g0010 Nicotiana tabacum HOM05D004131 ORTHO05D004778 8.6e-44 181.0 105 84.8
Phvul.003G059400 Phaseolus vulgaris HOM05D004131 ORTHO05D004778 8.6e-44 181.0 106 86.8
Atru.chr4.1513 Acer truncatum HOM05D004131 ORTHO05D004778 1.1e-43 180.6 111 82.0
Ciclev10022332m.g Citrus clementina HOM05D004131 ORTHO05D004778 1.1e-43 180.6 111 82.0
Manes.01G017500 Manihot esculenta HOM05D004131 ORTHO05D004778 1.1e-43 180.6 109 84.4
THA.LOC104804159 Tarenaya hassleriana HOM05D004131 ORTHO05D004778 1.1e-43 180.6 106 85.8
Potri.007G139900 Populus trichocarpa HOM05D004131 ORTHO05D004778 1.5e-43 180.3 111 81.1
Actinidia18408 Actinidia chinensis HOM05D004131 ORTHO05D004778 1.9e-43 179.9 111 82.0
MSTRG.24561 Avicennia marina HOM05D004131 ORTHO05D004778 2.5e-43 179.5 111 82.0
Glyma.07G206100 Glycine max HOM05D004131 ORTHO05D004778 2.5e-43 179.5 111 82.0
GSVIVG01038193001 Vitis vinifera HOM05D004131 ORTHO05D004778 2.5e-43 179.5 111 80.2
Ca_18622_v3 Cicer arietinum L. HOM05D004131 ORTHO05D004778 3.3e-43 179.1 111 82.0
Ca_18628_v3 Cicer arietinum L. HOM05D004131 ORTHO05D004778 3.3e-43 179.1 111 82.0
CSS0004184 Camellia sinensis var. sinensis HOM05D004131 ORTHO05D004778 4.3e-43 178.7 111 81.1
CSS0028329 Camellia sinensis var. sinensis HOM05D004131 ORTHO05D004778 4.3e-43 178.7 111 81.1
CiPaw.01G198800 Carya illinoinensis HOM05D004131 ORTHO05D004778 7.3e-43 177.9 105 86.7
Gorai.011G132700 Gossypium raimondii HOM05D004131 ORTHO05D004778 7.3e-43 177.9 111 81.1
Duzib212G0438 Durio zibethinus HOM05D004131 ORTHO05D004778 9.5e-43 177.6 111 81.1
Lj4g0014155 Lotus japonicus HOM05D004131 ORTHO05D004778 9.5e-43 177.6 111 82.0
PGSC0003DMG400005367 Solanum tuberosum HOM05D004131 ORTHO05D004778 9.5e-43 177.6 108 82.4
Glyma.02G138900 Glycine max HOM05D004131 ORTHO05D004778 1.2e-42 177.2 111 81.1
Psat7g119160 Pisum sativum HOM05D004131 ORTHO05D004778 1.2e-42 177.2 106 84.0
TPR.G23549 Trifolium pratense HOM05D004131 ORTHO05D004778 1.2e-42 177.2 106 84.0
Duzib268G1863 Durio zibethinus HOM05D004131 ORTHO05D004778 1.6e-42 176.8 111 80.2
Gohir.A10G146200 Gossypium hirsutum HOM05D004131 ORTHO05D004778 1.6e-42 176.8 111 80.2
Gohir.D10G120800 Gossypium hirsutum HOM05D004131 ORTHO05D004778 1.6e-42 176.8 111 80.2
Nn7g37517 Nelumbo nucifera HOM05D004131 ORTHO05D004778 1.6e-42 176.8 113 80.5
Solyc12g019470.2 Solanum lycopersicum HOM05D004131 ORTHO05D004778 1.6e-42 176.8 109 80.7
Sopen12g009750 Solanum pennellii HOM05D004131 ORTHO05D004778 1.6e-42 176.8 109 80.7
FvH4_1g00470 Fragaria vesca HOM05D004131 ORTHO05D004778 2.1e-42 176.4 111 79.3
FAN26G1335 Fragaria x ananassa HOM05D004131 ORTHO05D004778 2.8e-42 176.0 109 80.7
FAN28G1052 Fragaria x ananassa HOM05D004131 ORTHO05D004778 2.8e-42 176.0 111 79.3
Lsat_1_v5_gn_7_67880 Lactuca sativa HOM05D004131 ORTHO05D004778 2.8e-42 176.0 111 79.3
Lalb_Chr16g0384341 Lupinus albus HOM05D004131 ORTHO05D004778 2.8e-42 176.0 111 81.1
Peaxi162Scf00483g00111 Petunia axillaris HOM05D004131 ORTHO05D004778 2.8e-42 176.0 103 84.5
THA.LOC104805841 Tarenaya hassleriana HOM05D004131 ORTHO05D004778 2.8e-42 176.0 106 83.0
ATR0743G176 Amborella trichopoda HOM05D004131 ORTHO05D004778 3.6e-42 175.6 110 79.1
Haze_11173 Corylus avellana HOM05D004131 ORTHO05D004778 3.6e-42 175.6 113 78.8
Haze_11178 Corylus avellana HOM05D004131 ORTHO05D004778 3.6e-42 175.6 113 78.8
Hund12374 Selenicereus undatus HOM05D004131 ORTHO05D004778 3.6e-42 175.6 103 84.5
FAN23G0024 Fragaria x ananassa HOM05D004131 ORTHO05D004778 4.7e-42 175.3 108 81.5
Actinidia28972 Actinidia chinensis HOM05D004131 ORTHO05D004778 6.2e-42 174.9 103 85.4
Medtr4g087630 Medicago truncatula HOM05D004131 ORTHO05D004778 6.2e-42 174.9 106 82.1
Lalb_Chr05g0218801 Lupinus albus HOM05D004131 ORTHO05D004778 8.0e-42 174.5 111 80.2
COL.COLO4_04655 Corchorus olitorius HOM05D004131 ORTHO05D004778 1.0e-41 174.1 110 80.0
SalBow3G2571 Salvia bowleyana HOM05D004131 ORTHO05D004778 1.0e-41 174.1 103 82.5
Thhalv10006256m.g Eutrema salsugineum HOM05D004131 ORTHO05D004778 1.4e-41 173.7 111 77.5
RcHm_v2.0_Chr2g0084981 Rosa chinensis HOM05D004131 ORTHO05D004778 1.4e-41 173.7 108 79.6
THA.LOC104802336 Tarenaya hassleriana HOM05D004131 ORTHO05D004778 1.4e-41 173.7 105 82.9
CSS0000211 Camellia sinensis var. sinensis HOM05D004131 ORTHO05D004778 1.8e-41 173.3 103 82.5
CSS0046112 Camellia sinensis var. sinensis HOM05D004131 ORTHO05D004778 1.8e-41 173.3 103 82.5
TAR636G2398 Trochodendron aralioides HOM05D004131 ORTHO05D004778 1.8e-41 173.3 110 80.0
Aa31LG10G14050 Aethionema arabicum HOM05D004131 ORTHO05D004778 2.3e-41 172.9 106 79.2
MD02G1003900 Malus domestica HOM05D004131 ORTHO05D004778 2.3e-41 172.9 111 77.5
Sc13g0007290 Simmondsia chinensis HOM05D004131 ORTHO05D004778 2.3e-41 172.9 101 86.1
Aqoxy2G04165 Aquilegia oxysepala HOM05D004131 ORTHO05D004778 3.1e-41 172.6 111 74.8
CiPaw.02G123300 Carya illinoinensis HOM05D004131 ORTHO05D004778 4.0e-41 172.2 102 85.3
HPP92_023727 Vanilla planifolia HOM05D004131 ORTHO05D004778 4.0e-41 172.2 110 80.9
ECA130G0002 Erigeron canadensis HOM05D004131 ORTHO05D004778 5.2e-41 171.8 111 76.6
HanXRQChr02g0059071 Helianthus annuus HOM05D004131 ORTHO05D004778 6.8e-41 171.4 102 82.4
Ah.13g073340 Amaranthus hybridus HOM05D004131 ORTHO05D004778 8.9e-41 171.0 111 76.6
AL5G41850 Arabidopsis lyrata HOM05D004131 ORTHO05D004778 8.9e-41 171.0 111 75.7
MD15G1147200 Malus domestica HOM05D004131 ORTHO05D004778 8.9e-41 171.0 106 79.2
TAR362G1052 Trochodendron aralioides HOM05D004131 ORTHO05D004778 8.9e-41 171.0 111 76.6
PSO675G2278 Papaver somniferum HOM05D004131 ORTHO05D004778 1.2e-40 170.6 112 75.9
Sp5g03340 Schrenkiella parvula HOM05D004131 ORTHO05D004778 1.2e-40 170.6 110 76.4
CANSAT56G2001 Cannabis sativa HOM05D004131 ORTHO05D004778 1.5e-40 170.2 102 81.4
ECA233G3286 Erigeron canadensis HOM05D004131 ORTHO05D004778 2.0e-40 169.9 105 79.0
AT3G59800 Arabidopsis thaliana HOM05D004131 ORTHO05D004778 2.6e-40 169.5 106 77.4
Migut.N03052 Erythranthe guttata HOM05D004131 ORTHO05D004778 2.6e-40 169.5 111 74.8
Prupe.7G267400 Prunus persica HOM05D004131 ORTHO05D004778 2.6e-40 169.5 118 73.7
Sp4g25870 Schrenkiella parvula HOM05D004131 ORTHO05D004778 2.6e-40 169.5 106 77.4
BraA04t15927Z Brassica rapa HOM05D004131 ORTHO05D004778 3.4e-40 169.1 106 78.3
MBI07_g36705_MAGBIO Magnolia biondii HOM05D004131 ORTHO05D004778 4.4e-40 168.7 107 78.5
BcaB02g08209 Brassica carinata HOM05D004131 ORTHO05D004778 5.8e-40 168.3 111 74.8
A04p02020 Brassica napus HOM05D004131 ORTHO05D004778 5.8e-40 168.3 111 75.7
Lj6C265T11 Lonicera japonica HOM05D004131 ORTHO05D004778 5.8e-40 168.3 109 74.3
PSO017G4173 Papaver somniferum HOM05D004131 ORTHO05D004778 5.8e-40 168.3 107 78.5
C04p32910 Brassica napus HOM05D004131 ORTHO05D004778 9.8e-40 167.5 111 74.8
BcaC02g10087 Brassica carinata HOM05D004131 ORTHO05D004778 1.3e-39 167.2 111 74.8
BolC4t24854H Brassica oleracea HOM05D004131 ORTHO05D004778 1.3e-39 167.2 106 77.4
CARHR138980 Cardamine hirsuta HOM05D004131 ORTHO05D004778 1.3e-39 167.2 106 77.4
Eucgr.G01598 Eucalyptus grandis HOM05D004131 ORTHO05D004778 1.3e-39 167.2 101 81.2
Eucgr.L00027 Eucalyptus grandis HOM05D004131 ORTHO05D004778 1.3e-39 167.2 101 81.2
MELO3C022231.2 Cucumis melo HOM05D004131 ORTHO05D004778 1.7e-39 166.8 112 75.9
Sabra17G0009400 Salix brachista HOM05D004131 ORTHO05D004778 1.7e-39 166.8 135 67.4
CsaV3_5G040580 Cucumis sativus L. HOM05D004131 ORTHO05D004778 3.7e-39 165.6 112 75.9
SalBow6G7192 Salvia bowleyana HOM05D004131 ORTHO05D004778 3.7e-39 165.6 112 76.8
Carub.0004s2633 Capsella rubella HOM05D004131 ORTHO05D004778 4.9e-39 165.2 106 75.5
Zm00001eb425720 Zea mays HOM05D004131 ORTHO05D004778 4.9e-39 165.2 105 80.0
Ah.07g202990 Amaranthus hybridus HOM05D004131 ORTHO05D004778 8.3e-39 164.5 102 81.4
EL10Ac3g06119 Beta vulgaris HOM05D004131 ORTHO05D004778 1.4e-38 163.7 103 78.6
BolC4t22105H Brassica oleracea HOM05D004131 ORTHO05D004778 1.4e-38 163.7 114 73.7
BcaB02g08900 Brassica carinata HOM05D004131 ORTHO05D004778 1.9e-38 163.3 108 75.0
BcaC02g12362 Brassica carinata HOM05D004131 ORTHO05D004778 1.9e-38 163.3 108 75.0
C04p04750 Brassica napus HOM05D004131 ORTHO05D004778 1.9e-38 163.3 108 75.0
arahy.Tifrunner.gnm1.ann1.GY80IK Arachis hypogaea HOM05D004131 ORTHO05D004778 3.2e-38 162.5 132 69.7
AUR62023766 Chenopodium quinoa HOM05D004131 ORTHO05D004778 2.7e-37 159.5 108 75.9
AUR62002422 Chenopodium quinoa HOM05D004131 ORTHO05D004778 3.5e-37 159.1 112 74.1
A05p04000 Brassica napus HOM05D004131 ORTHO05D004778 4.6e-37 158.7 110 71.8
BraA05t19388Z Brassica rapa HOM05D004131 ORTHO05D004778 4.6e-37 158.7 110 71.8
Mapoly0055s0100 Marchantia polymorpha HOM05D004131 ORTHO05D004778 8.6e-36 154.5 113 70.8
AagrBONN_evm.TU.Sc2ySwM_344.2765 Anthoceros agrestis HOM05D004131 ORTHO05D004778 3.3e-35 152.5 112 69.6
vmacro15701 Vaccinium macrocarpon HOM05D004131 ORTHO05D004778 1.8e-33 146.7 164 52.4
SMO364G0381 Selaginella moellendorffii HOM05D004131 ORTHO05D004778 6.8e-33 144.8 112 66.1
Pp3c3_18840 Physcomitrium patens HOM05D004131 ORTHO05D004778 8.9e-33 144.4 114 68.4
Lju470A13T20 Lonicera japonica HOM05D004131 ORTHO05D004778 4.9e-31 138.7 188 45.7
VMungo0251G3663 Vigna mungo HOM05D004131 ORTHO05D004778 4.1e-30 135.6 82 84.1
Rhsim02G0086100 Rhododendron simsii HOM05D004131 ORTHO05D004778 5.4e-30 135.2 191 44.5
PGR042G3815 Punica granatum HOM05D004131 ORTHO05D004778 7.1e-30 134.8 78 88.5
Sed0002263 Sechium edule HOM05D004131 ORTHO05D004778 1.0e-28 131.0 81 81.5
Lju470A13G17 Lonicera japonica HOM05D004131 ORTHO05D004778 1.1e-27 127.5 80 78.8
Aqoxy604s001 Aquilegia oxysepala HOM05D004131 ORTHO05D004778 3.6e-26 122.5 124 56.5
RhsimUnG0015600 Rhododendron simsii HOM05D004131 ORTHO05D004778 4.7e-26 122.1 225 37.8
Actinidia11437 Actinidia chinensis HOM05D004131 ORTHO05D004778 2.3e-25 119.8 71 81.7
AT2G43795 Arabidopsis thaliana HOM05D004131 ORTHO05D004778 8.9e-25 117.9 85 70.6
AL4G42670 Arabidopsis lyrata HOM05D004131 ORTHO05D004778 2.0e-24 116.7 83 72.3
SEGI_19170 Sequoiadendron giganteum HOM05D004131 ORTHO05D004778 8.4e-23 111.3 81 69.1
CARHR170140 Cardamine hirsuta HOM05D004131 ORTHO05D004778 3.2e-22 109.4 69 78.3
QL10p058548 Quercus lobata HOM05D004131 ORTHO05D004778 4.1e-22 109.0 65 80.0
QL10p059325 Quercus lobata HOM05D004131 ORTHO05D004778 4.1e-22 109.0 65 80.0
Oeu050314.3 Olea europaea HOM05D004131 ORTHO05D004778 3.9e-20 102.4 223 57.4
BcaC07g40454 Brassica carinata HOM05D004131 ORTHO05D004778 4.3e-19 99.0 81 64.2
CBR_g6538 Chara braunii HOM05D004131 ORTHO05D004778 2.1e-18 96.7 72 65.3
Lj6C255T9 Lonicera japonica HOM05D004131 ORTHO05D004778 1.5e-16 90.5 73 64.4
BraA09t40640Z Brassica rapa HOM05D004131 ORTHO05D004778 2.0e-16 90.1 82 57.3
BcaB02g08224 Brassica carinata HOM05D004131 ORTHO05D004778 3.4e-16 89.4 63 71.4
Cre16.g660850 Chlamydomonas reinhardtii HOM05D004131 ORTHO05D004778 3.4e-16 89.4 102 49.0
ClCG08G000030 Citrullus lanatus HOM05D004131 ORTHO05D004778 2.9e-15 86.3 111 50.5
BcaC07g40508 Brassica carinata HOM05D004131 ORTHO05D004778 1.4e-14 84.0 77 58.4
C08p34760 Brassica napus HOM05D004131 ORTHO05D004778 1.4e-14 84.0 77 58.4
BolC8t51078H Brassica oleracea HOM05D004131 ORTHO05D004778 1.4e-14 84.0 77 58.4
SGA_v2.0_scaffold37G14924 Striga asiatica HOM05D004131 ORTHO05D004778 5.4e-14 82.0 148 41.9
QL10p058544 Quercus lobata HOM05D004131 ORTHO05D004778 9.6e-11 71.2 48 77.1
Sed0017538 Sechium edule HOM05D004131 ORTHO05D004778 2.8e-10 69.7 34 88.2
QL10p059329 Quercus lobata HOM05D004131 ORTHO05D004778 4.8e-10 68.9 43 83.7
MSTRG.9725 Avicennia marina HOM05D005043 ORTHO05D000110 1.4e-09 67.4 93 46.2
BcaC07g40452 Brassica carinata HOM05D004131 ORTHO05D004778 1.8e-09 67.0 45 80.0
Thecc.04G162100 Theobroma cacao HOM05D004131 ORTHO05D004778 3.1e-09 66.2 51 72.5
Carub.0005s2652 Capsella rubella HOM05D004131 ORTHO05D004778 2.6e-08 63.2 40 82.5
Lju470A13T22 Lonicera japonica HOM05D004131 ORTHO05D004778 1.7e-07 60.5 48 66.7
BcaB02g07200 Brassica carinata HOM05D004131 ORTHO05D004778 3.8e-07 59.3 42 76.2
BcaNung06582 Brassica carinata HOM05D004131 ORTHO05D004778 3.8e-07 59.3 35 88.6
BcaB02g07199 Brassica carinata HOM05D004131 ORTHO05D004778 3.2e-06 56.2 39 76.9
Cpa.g.c34531 Carica papaya HOM05D004131 ORTHO05D004778 7.1e-06 55.1 29 89.7
Os04g0496600 Oryza sativa ssp. japonica HOM05D004131 ORTHO05D004778 7.1e-06 55.1 26 92.3


User provided reference genes

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