Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc03_g14540 Coffea canephora HOM05D007607 ORTHO05D009603 1.1e-55 219.9 133 100.0
Ciclev10022842m.g Citrus clementina HOM05D007607 ORTHO05D009603 1.8e-21 106.3 134 59.0
Haze_01353 Corylus avellana HOM05D007607 ORTHO05D009603 2.7e-20 102.4 128 56.2
Actinidia28975 Actinidia chinensis HOM05D007607 ORTHO05D009603 6.6e-19 97.8 126 49.2
Cfa015274 Carpinus fangiana HOM05D007607 ORTHO05D009603 8.6e-19 97.4 129 49.6
CiPaw.02G100000 Carya illinoinensis HOM05D007607 ORTHO05D009603 1.5e-18 96.7 126 54.0
QL10p057428 Quercus lobata HOM05D007607 ORTHO05D009603 1.9e-18 96.3 132 53.0
Dinv18311 Davidia involucrata HOM05D007607 ORTHO05D009603 2.5e-18 95.9 125 60.8
CiPaw.01G169900 Carya illinoinensis HOM05D007607 ORTHO05D009603 5.5e-18 94.7 127 53.5
QL10p057723 Quercus lobata HOM05D007607 ORTHO05D009603 5.5e-18 94.7 132 53.8
Potri.013G128700 Populus trichocarpa HOM05D007607 ORTHO05D009603 7.2e-18 94.4 133 53.4
GSVIVG01038189001 Vitis vinifera HOM05D007607 ORTHO05D009603 3.6e-17 92.0 134 56.0
Manes.05G131900 Manihot esculenta HOM05D007607 ORTHO05D009603 1.0e-16 90.5 132 53.8
CSS0037895 Camellia sinensis var. sinensis HOM05D007607 ORTHO05D009603 1.4e-16 90.1 135 55.6
Peaxi162Scf00883g00099 Petunia axillaris HOM05D007607 ORTHO05D009603 3.0e-16 89.0 126 54.0
RhsimUnG0015300 Rhododendron simsii HOM05D007607 ORTHO05D009603 4.0e-16 88.6 135 56.3
CAN.G1237.5 Capsicum annuum HOM05D007607 ORTHO05D009603 8.9e-16 87.4 129 54.3
CSS0042213 Camellia sinensis var. sinensis HOM05D007607 ORTHO05D009603 2.6e-15 85.9 133 54.1
Rhsim02G0085800 Rhododendron simsii HOM05D007607 ORTHO05D009603 3.4e-15 85.5 119 59.7
FvH4_1g00500 Fragaria vesca HOM05D007607 ORTHO05D009603 2.2e-14 82.8 130 58.5
MBI10_g16327_MAGBIO Magnolia biondii HOM05D007607 ORTHO05D009603 2.8e-14 82.4 122 52.5
Solyc12g019550.2 Solanum lycopersicum HOM05D007607 ORTHO05D009603 4.9e-14 81.6 129 50.4
MELO3C011848.2 Cucumis melo HOM05D007607 ORTHO05D009603 6.3e-14 81.3 134 50.0
Atru.chr4.1481 Acer truncatum HOM05D007607 ORTHO05D009603 1.1e-13 80.5 110 52.7
Sopen12g009810 Solanum pennellii HOM05D007607 ORTHO05D009603 1.1e-13 80.5 128 49.2
Thecc.04G162800 Theobroma cacao HOM05D007607 ORTHO05D009603 3.2e-13 79.0 134 47.8
CsaV3_5G030090 Cucumis sativus L. HOM05D007607 ORTHO05D009603 4.1e-13 78.6 134 49.3
Atru.chr4.1510 Acer truncatum HOM05D007607 ORTHO05D009603 5.4e-13 78.2 112 52.7
Eucgr.H00285 Eucalyptus grandis HOM05D007607 ORTHO05D009603 7.0e-13 77.8 128 50.0
PSO017G0391 Papaver somniferum HOM05D007607 ORTHO05D009603 9.2e-13 77.4 132 40.9
RcHm_v2.0_Chr2g0085131 Rosa chinensis HOM05D007607 ORTHO05D009603 9.2e-13 77.4 130 54.6
CANSAT56G1551 Cannabis sativa HOM05D007607 ORTHO05D009603 1.2e-12 77.0 132 48.5
MD02G1004100 Malus domestica HOM05D007607 ORTHO05D009603 1.6e-12 76.6 140 50.7
arahy.Tifrunner.gnm1.ann1.RJI6AK Arachis hypogaea HOM05D007607 ORTHO05D009603 2.0e-12 76.3 134 54.5
Gohir.D10G121500 Gossypium hirsutum HOM05D007607 ORTHO05D009603 3.5e-12 75.5 135 45.2
Gorai.011G133600 Gossypium raimondii HOM05D007607 ORTHO05D009603 3.5e-12 75.5 135 45.2
MD15G1147800 Malus domestica HOM05D007607 ORTHO05D009603 3.5e-12 75.5 119 54.6
Sed0020904 Sechium edule HOM05D007607 ORTHO05D009603 3.5e-12 75.5 83 53.0
Gohir.A10G145500 Gossypium hirsutum HOM05D007607 ORTHO05D009603 4.5e-12 75.1 135 45.2
PGSC0003DMG400029159 Solanum tuberosum HOM05D007607 ORTHO05D009603 4.5e-12 75.1 128 49.2
ClCG11G013470 Citrullus lanatus HOM05D007607 ORTHO05D009603 7.8e-12 74.3 135 48.1
Duzib212G0637 Durio zibethinus HOM05D007607 ORTHO05D009603 7.8e-12 74.3 134 45.5
MSTRG.22043 Avicennia marina HOM05D007607 ORTHO05D009603 2.3e-11 72.8 78 67.9
TAR362G0213 Trochodendron aralioides HOM05D007607 ORTHO05D009603 2.9e-11 72.4 133 50.4
Nitab4.5_0000575g0080 Nicotiana tabacum HOM05D007607 ORTHO05D009603 3.9e-11 72.0 110 58.2
Nitab4.5_0008331g0020 Nicotiana tabacum HOM05D001883 ORTHO05D002184 6.6e-11 71.2 132 53.0
Glyma.07G206400 Glycine max HOM05D007607 ORTHO05D009603 1.1e-10 70.5 144 50.0
PSO675G5570 Papaver somniferum HOM05D007607 ORTHO05D009603 1.1e-10 70.5 132 39.4
Prupe.7G267000 Prunus persica HOM05D007607 ORTHO05D009603 1.1e-10 70.5 83 66.3
TWI15G0968 Tripterygium wilfordii HOM05D007607 ORTHO05D009603 1.1e-10 70.5 127 48.8
PGR142G0203 Punica granatum HOM05D007607 ORTHO05D009603 1.5e-10 70.1 81 63.0
Migut.N03053 Erythranthe guttata HOM05D007607 ORTHO05D009603 2.5e-10 69.3 121 48.8
Lsat_1_v5_gn_8_9141 Lactuca sativa HOM05D007607 ORTHO05D009603 4.3e-10 68.6 79 55.7
Hund12359 Selenicereus undatus HOM05D007607 ORTHO05D009603 4.3e-10 68.6 73 63.0
Psat7g119360 Pisum sativum HOM05D007607 ORTHO05D009603 5.6e-10 68.2 138 50.0
C05p20400 Brassica napus HOM05D007607 ORTHO05D009603 9.5e-10 67.4 121 50.4
ECA233G0487 Erigeron canadensis HOM05D007607 ORTHO05D009603 1.2e-09 67.0 133 39.8
BcaC06g34863 Brassica carinata HOM05D007607 ORTHO05D009603 1.6e-09 66.6 117 48.7
BolC7t42778H Brassica oleracea HOM05D007607 ORTHO05D009603 1.6e-09 66.6 117 48.7
BraA06t24849Z Brassica rapa HOM05D007607 ORTHO05D009603 1.6e-09 66.6 117 50.4
Ca_18631_v3 Cicer arietinum L. HOM05D004461 ORTHO05D005543 1.6e-09 66.6 130 40.0
Cpa.g.sc343.4 Carica papaya HOM05D007607 ORTHO05D009603 2.8e-09 65.9 132 48.5
AUR62002416 Chenopodium quinoa HOM05D007607 ORTHO05D009603 2.8e-09 65.9 75 49.3
DCAR_005451 Daucus carota HOM05D007607 ORTHO05D009603 2.8e-09 65.9 139 41.7
SalBow6G6796 Salvia bowleyana HOM05D007607 ORTHO05D009603 2.8e-09 65.9 122 46.7
Glyma.02G138600 Glycine max HOM05D007607 ORTHO05D009603 3.6e-09 65.5 146 47.9
HanXRQChr02g0059081 Helianthus annuus HOM05D007607 ORTHO05D009603 3.6e-09 65.5 86 64.0
MSTRG.24562 Avicennia marina HOM05D007607 ORTHO05D009603 4.7e-09 65.1 125 49.6
BcaC05g26059 Brassica carinata HOM05D007607 ORTHO05D009603 6.1e-09 64.7 121 49.6
BolC5t30734H Brassica oleracea HOM05D007607 ORTHO05D009603 6.1e-09 64.7 121 49.6
Sp1g19030 Schrenkiella parvula HOM05D007607 ORTHO05D009603 8.0e-09 64.3 118 51.7
A06p17530 Brassica napus HOM05D007607 ORTHO05D009603 1.4e-08 63.5 117 48.7
A07p15130 Brassica napus HOM05D007607 ORTHO05D009603 1.4e-08 63.5 118 47.5
Lalb_Chr16g0384371 Lupinus albus HOM05D007607 ORTHO05D009603 1.4e-08 63.5 77 62.3
AUR62023773 Chenopodium quinoa HOM05D007607 ORTHO05D009603 1.8e-08 63.2 75 62.7
THA.LOC104813690 Tarenaya hassleriana HOM05D007607 ORTHO05D009603 1.8e-08 63.2 131 47.3
BcaB07g32146 Brassica carinata HOM05D007607 ORTHO05D009603 2.3e-08 62.8 117 47.9
C07p22190 Brassica napus HOM05D007607 ORTHO05D009603 2.3e-08 62.8 117 47.9
Aqoxy2G03795 Aquilegia oxysepala HOM05D007607 ORTHO05D009603 3.1e-08 62.4 117 47.9
EL10Ac3g06110 Beta vulgaris HOM05D007607 ORTHO05D009603 3.1e-08 62.4 129 41.9
BcaB03g14267 Brassica carinata HOM05D007607 ORTHO05D009603 4.0e-08 62.0 119 48.7
Sc13g0006620 Simmondsia chinensis HOM05D007607 ORTHO05D009603 6.8e-08 61.2 97 39.2
Lj4g0023803 Lotus japonicus HOM05D007607 ORTHO05D009603 8.9e-08 60.8 131 47.3
Actinidia11440 Actinidia chinensis HOM05D007607 ORTHO05D009603 1.5e-07 60.1 135 40.7
Carub.0001s2092 Capsella rubella HOM05D007607 ORTHO05D009603 2.0e-07 59.7 94 52.1
Zm00001eb318610 Zea mays HOM05D007607 ORTHO05D009603 2.6e-07 59.3 37 78.4
AL1G34640 Arabidopsis lyrata HOM05D007607 ORTHO05D009603 3.4e-07 58.9 108 50.0
VMungo0251G2348 Vigna mungo HOM05D007607 ORTHO05D009603 3.4e-07 58.9 76 65.8
Nn7g37525 Nelumbo nucifera HOM05D007607 ORTHO05D009603 5.8e-07 58.2 44 72.7
Phvul.003G059800 Phaseolus vulgaris HOM05D007607 ORTHO05D009603 5.8e-07 58.2 79 60.8
unitig_22.g5705 Utricularia gibba HOM05D007607 ORTHO05D009603 9.8e-07 57.4 82 58.5
Thhalv10009074m.g Eutrema salsugineum HOM05D007607 ORTHO05D009603 1.3e-06 57.0 76 61.8
Medtr4g087540 Medicago truncatula HOM05D007607 ORTHO05D009603 1.3e-06 57.0 139 49.6
AT1G21500 Arabidopsis thaliana HOM05D007607 ORTHO05D009603 2.2e-06 56.2 76 59.2
Os09g0517000 Oryza sativa ssp. japonica HOM05D007607 ORTHO05D009603 2.2e-06 56.2 37 73.0
Aa31LG7G5390 Aethionema arabicum HOM05D007607 ORTHO05D009603 2.9e-06 55.8 128 46.9
TPR.G23536 Trifolium pratense HOM05D007607 ORTHO05D009603 6.4e-06 54.7 138 46.4
CARHR021860 Cardamine hirsuta HOM05D007607 ORTHO05D009603 8.3e-06 54.3 81 56.8


User provided reference genes

Program Settings