Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc03_g14400 Coffea canephora HOM05D002753 ORTHO05D003097 9.3e-56 219.9 108 100.0
Cc04_g08920 Coffea canephora HOM05D002753 ORTHO05D003097 3.2e-24 115.2 59 94.9
Dinv30988 Davidia involucrata HOM05D002753 ORTHO05D003097 3.2e-16 88.6 54 77.8
CiPaw.16G101300 Carya illinoinensis HOM05D002753 ORTHO05D003097 1.6e-15 86.3 54 75.9
Atru.BG.196.p Acer truncatum HOM05D002753 ORTHO05D003097 2.1e-15 85.9 48 85.4
FAN04G0651 Fragaria x ananassa HOM05D002753 ORTHO05D003097 2.7e-15 85.5 52 76.9
Glyma.16G217500 Glycine max HOM05D002753 ORTHO05D003097 2.7e-15 85.5 48 83.3
ClCG04G012490 Citrullus lanatus HOM05D002753 ORTHO05D003097 3.6e-15 85.1 47 80.9
FvH4_5g18120 Fragaria vesca HOM05D002753 ORTHO05D003097 3.6e-15 85.1 48 81.2
FAN18G3210 Fragaria x ananassa HOM05D002753 ORTHO05D003097 3.6e-15 85.1 48 81.2
TPR.G24091 Trifolium pratense HOM05D002753 ORTHO05D003097 4.7e-15 84.7 48 83.3
MELO3C001960.2 Cucumis melo HOM05D002753 ORTHO05D003097 6.1e-15 84.3 47 80.9
CsaV3_1G005210 Cucumis sativus L. HOM05D002753 ORTHO05D003097 6.1e-15 84.3 47 80.9
FAN08G1509 Fragaria x ananassa HOM05D002753 ORTHO05D003097 6.1e-15 84.3 48 81.2
FAN13G0967 Fragaria x ananassa HOM05D002753 ORTHO05D003097 6.1e-15 84.3 48 81.2
RcHm_v2.0_Chr7g0177491 Rosa chinensis HOM05D002753 ORTHO05D003097 6.1e-15 84.3 48 81.2
MD06G1236700 Malus domestica HOM05D002753 ORTHO05D003097 1.0e-14 83.6 48 79.2
QL10p032161 Quercus lobata HOM05D002753 ORTHO05D003097 1.8e-14 82.8 52 73.1
TAR629G1083 Trochodendron aralioides HOM05D002753 ORTHO05D003097 1.8e-14 82.8 48 81.2
Haze_18994 Corylus avellana HOM05D002753 ORTHO05D003097 2.3e-14 82.4 54 72.2
QL10p032039 Quercus lobata HOM05D002753 ORTHO05D003097 2.3e-14 82.4 52 73.1
Cpa.g.sc21.59 Carica papaya HOM05D002753 ORTHO05D003097 3.0e-14 82.0 49 75.5
Cfa020691 Carpinus fangiana HOM05D002753 ORTHO05D003097 3.0e-14 82.0 54 70.4
Ciclev10021011m.g Citrus clementina HOM05D002753 ORTHO05D003097 3.0e-14 82.0 48 75.0
Lj5C165G25 Lonicera japonica HOM05D002753 ORTHO05D003097 3.0e-14 82.0 58 67.2
arahy.Tifrunner.gnm1.ann1.305BSH Arachis hypogaea HOM05D002753 ORTHO05D003097 3.9e-14 81.6 48 79.2
arahy.Tifrunner.gnm1.ann1.V6QG6Q Arachis hypogaea HOM05D002753 ORTHO05D003097 3.9e-14 81.6 48 79.2
Lj2g0022789 Lotus japonicus HOM05D002753 ORTHO05D003097 3.9e-14 81.6 48 79.2
Ca_18567_v3 Cicer arietinum L. HOM05D002753 ORTHO05D003097 5.2e-14 81.3 48 79.2
Lalb_Chr24g0398461 Lupinus albus HOM05D002753 ORTHO05D003097 5.2e-14 81.3 48 77.1
Nitab4.5_0005200g0050 Nicotiana tabacum HOM05D002753 ORTHO05D003097 5.2e-14 81.3 48 79.2
Eucgr.H00613 Eucalyptus grandis HOM05D002753 ORTHO05D003097 6.7e-14 80.9 48 72.9
Potri.015G030300 Populus trichocarpa HOM05D002753 ORTHO05D003097 6.7e-14 80.9 48 72.9
DCAR_010212 Daucus carota HOM05D002753 ORTHO05D003097 1.1e-13 80.1 55 67.3
Medtr6g477880 Medicago truncatula HOM05D002753 ORTHO05D003097 1.1e-13 80.1 48 77.1
Phvul.004G143000 Phaseolus vulgaris HOM05D002753 ORTHO05D003097 1.1e-13 80.1 48 75.0
Psat1g031520 Pisum sativum HOM05D002753 ORTHO05D003097 1.5e-13 79.7 48 77.1
Prupe.5G241200 Prunus persica HOM05D002753 ORTHO05D003097 1.5e-13 79.7 48 72.9
Sabra15G0025300 Salix brachista HOM05D002753 ORTHO05D003097 1.5e-13 79.7 48 75.0
Sed0002549 Sechium edule HOM05D002753 ORTHO05D003097 1.5e-13 79.7 47 74.5
Nitab4.5_0001180g0020 Nicotiana tabacum HOM05D002753 ORTHO05D003097 2.0e-13 79.3 48 77.1
Oeu013927.4 Olea europaea HOM05D002753 ORTHO05D003097 2.0e-13 79.3 47 80.9
Peaxi162Scf00171g00065 Petunia axillaris HOM05D002753 ORTHO05D003097 4.4e-13 78.2 48 79.2
VMungo0464G0886 Vigna mungo HOM05D002753 ORTHO05D003097 4.4e-13 78.2 48 75.0
GSVIVG01029393001 Vitis vinifera HOM05D002753 ORTHO05D003097 4.4e-13 78.2 48 72.9
Zm00001eb250910 Zea mays HOM05D002753 ORTHO05D003097 4.4e-13 78.2 47 74.5
CANSAT01G0744 Cannabis sativa HOM05D002753 ORTHO05D003097 5.7e-13 77.8 48 77.1
Actinidia18878 Actinidia chinensis HOM05D002753 ORTHO05D003097 7.4e-13 77.4 50 72.0
Aqoxy3G04117 Aquilegia oxysepala HOM05D002753 ORTHO05D003097 7.4e-13 77.4 56 64.3
MBI08_g09789_MAGBIO Magnolia biondii HOM05D002753 ORTHO05D003097 7.4e-13 77.4 47 74.5
Ah.05g175110 Amaranthus hybridus HOM05D002753 ORTHO05D003097 9.7e-13 77.0 105 41.0
HanXRQChr14g0428031 Helianthus annuus HOM05D002753 ORTHO05D003097 9.7e-13 77.0 48 72.9
CAN.G637.18 Capsicum annuum HOM05D002753 ORTHO05D003097 1.3e-12 76.6 48 75.0
PSO063G3843 Papaver somniferum HOM05D002753 ORTHO05D003097 1.3e-12 76.6 53 69.8
BraA08t32215Z Brassica rapa HOM05D002753 ORTHO05D003097 2.2e-12 75.9 54 63.0
Sc11g0007040 Simmondsia chinensis HOM05D002753 ORTHO05D003097 2.2e-12 75.9 48 72.9
BcaB04g17086 Brassica carinata HOM05D002753 ORTHO05D003097 2.8e-12 75.5 55 61.8
Nn3g18508 Nelumbo nucifera HOM05D002753 ORTHO05D003097 2.8e-12 75.5 48 72.9
TWI81G0128 Tripterygium wilfordii HOM05D002753 ORTHO05D003097 2.8e-12 75.5 47 74.5
EL10Ac1g00940 Beta vulgaris HOM05D002753 ORTHO05D003097 3.7e-12 75.1 47 68.1
PGR083G2063 Punica granatum HOM05D002753 ORTHO05D003097 3.7e-12 75.1 49 71.4
SGA_v2.0_scaffold90G27771 Striga asiatica HOM05D002753 ORTHO05D003097 4.8e-12 74.7 47 76.6
Sopen03g028880 Solanum pennellii HOM05D002753 ORTHO05D003097 6.3e-12 74.3 48 72.9
PGSC0003DMG400031039 Solanum tuberosum HOM05D002753 ORTHO05D003097 6.3e-12 74.3 54 66.7
A08p01620 Brassica napus HOM05D002753 ORTHO05D003097 8.2e-12 73.9 50 66.0
Manes.02G220100 Manihot esculenta HOM05D002753 ORTHO05D003097 8.2e-12 73.9 48 68.8
Migut.O00244 Erythranthe guttata HOM05D002753 ORTHO05D003097 1.1e-11 73.6 51 68.6
ATR0807G174 Amborella trichopoda HOM05D002753 ORTHO05D003097 1.4e-11 73.2 48 68.8
Lsat_1_v5_gn_2_5161 Lactuca sativa HOM05D002753 ORTHO05D003097 1.4e-11 73.2 50 70.0
Aa31LG10G1790 Aethionema arabicum HOM05D002753 ORTHO05D003097 1.8e-11 72.8 53 64.2
CDE05G2206 Ceratophyllum demersum HOM05D002753 ORTHO05D003097 1.8e-11 72.8 47 74.5
PSO782G0438 Papaver somniferum HOM05D002753 ORTHO05D003097 1.8e-11 72.8 53 66.0
Sp1g39920 Schrenkiella parvula HOM05D002753 ORTHO05D003097 1.8e-11 72.8 55 58.2
THA.LOC104810434 Tarenaya hassleriana HOM05D002753 ORTHO05D003097 1.8e-11 72.8 49 67.3
Solyc03g098180.3 Solanum lycopersicum HOM05D002753 ORTHO05D003097 2.4e-11 72.4 48 70.8
ECA238G0832 Erigeron canadensis HOM05D000002 ORTHO05D000001 3.1e-11 72.0 55 58.2
BcaB02g10949 Brassica carinata HOM05D002753 ORTHO05D003097 4.1e-11 71.6 48 66.7
Carub.0001s4252 Capsella rubella HOM05D002753 ORTHO05D003097 4.1e-11 71.6 50 64.0
SalBow5G1094 Salvia bowleyana HOM05D002753 ORTHO05D003097 5.3e-11 71.2 47 68.1
SalBow5G3512 Salvia bowleyana HOM05D002753 ORTHO05D003097 5.3e-11 71.2 47 68.1
CARHR043570 Cardamine hirsuta HOM05D002753 ORTHO05D003097 7.0e-11 70.9 44 70.5
Thhalv10011996m.g Eutrema salsugineum HOM05D002753 ORTHO05D003097 7.0e-11 70.9 46 67.4
SalBow5G2867 Salvia bowleyana HOM05D002753 ORTHO05D003097 9.1e-11 70.5 48 68.8
SEGI_22169 Sequoiadendron giganteum HOM05D002753 ORTHO05D003097 9.1e-11 70.5 44 70.5
AL1G61830 Arabidopsis lyrata HOM05D002753 ORTHO05D003097 1.6e-10 69.7 48 64.6
AUR62004230 Chenopodium quinoa HOM05D002753 ORTHO05D003097 1.6e-10 69.7 48 60.4
AUR62013618 Chenopodium quinoa HOM05D002753 ORTHO05D003097 1.6e-10 69.7 48 60.4
AT1G53345 Arabidopsis thaliana HOM05D002753 ORTHO05D003097 2.0e-10 69.3 47 66.0
BcaC01g01385 Brassica carinata HOM05D002753 ORTHO05D003097 2.0e-10 69.3 43 72.1
MSTRG.23204 Avicennia marina HOM05D002753 ORTHO05D003097 2.6e-10 68.9 47 70.2
A05p18370 Brassica napus HOM05D002753 ORTHO05D003097 3.5e-10 68.6 48 64.6
unitig_0.g1399 Utricularia gibba HOM05D002753 ORTHO05D003097 5.9e-10 67.8 46 65.2
BraA05t20727Z Brassica rapa HOM05D002753 ORTHO05D003097 7.7e-10 67.4 48 62.5
Pp3c4_5290 Physcomitrium patens HOM05D002753 ORTHO05D003097 9.4e-08 60.5 44 63.6
AagrBONN_evm.TU.Sc2ySwM_117.2467 Anthoceros agrestis HOM05D002753 ORTHO05D003097 1.6e-07 59.7 50 60.0
SMO352G0025 Selaginella moellendorffii HOM05D002753 ORTHO05D003097 2.3e-06 55.8 79 43.0
SEGI_35693 Sequoiadendron giganteum HOM05D002753 ORTHO05D003097 5.2e-06 54.7 51 51.0


User provided reference genes

Program Settings