Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc03_g14390 Coffea canephora HOM05D003922 ORTHO05D004492 2.7e-77 292.0 150 100.0
Oeu050329.1 Olea europaea HOM05D003922 ORTHO05D004492 8.9e-65 250.4 150 83.3
CSS0038398 Camellia sinensis var. sinensis HOM05D003922 ORTHO05D004492 1.2e-61 240.0 150 78.7
Dinv18325 Davidia involucrata HOM05D003922 ORTHO05D004492 3.5e-61 238.4 150 80.7
CSS0002835 Camellia sinensis var. sinensis HOM05D003922 ORTHO05D004492 6.0e-61 237.7 150 78.0
GSVIVG01035132001 Vitis vinifera HOM05D003922 ORTHO05D004492 6.0e-61 237.7 150 78.0
Solyc08g014300.4 Solanum lycopersicum HOM05D003922 ORTHO05D004492 1.3e-60 236.5 150 74.7
Sopen08g005210 Solanum pennellii HOM05D003922 ORTHO05D004492 1.3e-60 236.5 150 74.7
Rhsim09G0008700 Rhododendron simsii HOM05D003922 ORTHO05D004492 3.0e-60 235.3 150 77.3
PGSC0003DMG400016054 Solanum tuberosum HOM05D003922 ORTHO05D004492 5.6e-59 231.1 150 74.0
vmacro00688 Vaccinium macrocarpon HOM05D003922 ORTHO05D004492 7.3e-59 230.7 150 77.3
Lj6A217G7 Lonicera japonica HOM05D003922 ORTHO05D004492 2.1e-58 229.2 150 75.3
CSS0049854 Camellia sinensis var. sinensis HOM05D003922 ORTHO05D004492 1.1e-57 226.9 150 75.3
Actinidia27120 Actinidia chinensis HOM05D003922 ORTHO05D004492 1.4e-57 226.5 150 74.7
PGR142G3702 Punica granatum HOM05D003922 ORTHO05D004492 1.8e-57 226.1 150 74.7
Peaxi162Scf00075g01329 Petunia axillaris HOM05D003922 ORTHO05D004492 3.1e-57 225.3 150 75.3
TAR633G0046 Trochodendron aralioides HOM05D003922 ORTHO05D004492 4.0e-57 224.9 146 75.3
DCAR_005455 Daucus carota HOM05D003922 ORTHO05D004492 5.2e-57 224.6 150 75.3
EL10Ac3g06102 Beta vulgaris HOM05D003922 ORTHO05D004492 6.8e-57 224.2 149 73.2
Manes.05G137000 Manihot esculenta HOM05D003922 ORTHO05D004492 6.8e-57 224.2 150 73.3
PGSC0003DMG400016330 Solanum tuberosum HOM05D003922 ORTHO05D004492 8.9e-57 223.8 150 72.7
THA.LOC104800922 Tarenaya hassleriana HOM05D003922 ORTHO05D004492 2.0e-56 222.6 150 72.0
Eucgr.H00289 Eucalyptus grandis HOM05D003922 ORTHO05D004492 4.4e-56 221.5 150 72.7
Thhalv10009017m.g Eutrema salsugineum HOM05D003922 ORTHO05D004492 4.4e-56 221.5 150 70.0
Lsat_1_v5_gn_1_74581 Lactuca sativa HOM05D003922 ORTHO05D004492 5.8e-56 221.1 148 73.0
Hund03208 Selenicereus undatus HOM05D003922 ORTHO05D004492 5.8e-56 221.1 146 72.6
MSTRG.22037 Avicennia marina HOM05D003922 ORTHO05D004492 7.6e-56 220.7 150 73.3
Duzib268G1060 Durio zibethinus HOM05D003922 ORTHO05D004492 7.6e-56 220.7 150 70.7
Gohir.A09G213608 Gossypium hirsutum HOM05D003922 ORTHO05D004492 9.9e-56 220.3 150 69.3
Gohir.D09G212300 Gossypium hirsutum HOM05D003922 ORTHO05D004492 9.9e-56 220.3 150 69.3
Gorai.006G232100 Gossypium raimondii HOM05D003922 ORTHO05D004492 9.9e-56 220.3 150 69.3
CANSAT56G1338 Cannabis sativa HOM05D003922 ORTHO05D004492 1.3e-55 219.9 146 71.2
Cpa.g.sc9.377 Carica papaya HOM05D003922 ORTHO05D004492 1.3e-55 219.9 150 70.0
HanXRQChr11g0343091 Helianthus annuus HOM05D003922 ORTHO05D004492 1.3e-55 219.9 146 74.0
BcaC07g42112 Brassica carinata HOM05D003922 ORTHO05D004492 1.7e-55 219.5 150 69.3
Sopen06g018570 Solanum pennellii HOM05D003922 ORTHO05D004492 2.9e-55 218.8 150 70.7
THA.LOC104815872 Tarenaya hassleriana HOM05D003922 ORTHO05D004492 2.9e-55 218.8 146 72.6
A09p67310 Brassica napus HOM05D003922 ORTHO05D004492 3.8e-55 218.4 150 68.7
Potri.013G127400 Populus trichocarpa HOM05D003922 ORTHO05D004492 3.8e-55 218.4 148 71.6
AT1G05730 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 4.9e-55 218.0 150 68.7
Thecc.04G164400 Theobroma cacao HOM05D003922 ORTHO05D004492 4.9e-55 218.0 146 70.5
Aqoxy2G04156 Aquilegia oxysepala HOM05D003922 ORTHO05D004492 8.4e-55 217.2 151 68.9
Migut.N03060 Erythranthe guttata HOM05D003922 ORTHO05D004492 8.4e-55 217.2 150 70.0
Sp4g14200 Schrenkiella parvula HOM05D003922 ORTHO05D004492 8.4e-55 217.2 150 69.3
ECA248G0756 Erigeron canadensis HOM05D003922 ORTHO05D004492 1.1e-54 216.9 148 71.6
Ciclev10022699m.g Citrus clementina HOM05D003922 ORTHO05D004492 1.9e-54 216.1 150 70.0
AT2G31725 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 2.4e-54 215.7 150 67.3
MSTRG.24564 Avicennia marina HOM05D003922 ORTHO05D004492 2.4e-54 215.7 150 70.7
Sabra13G0106500 Salix brachista HOM05D003922 ORTHO05D004492 3.2e-54 215.3 148 70.9
Sed0023559 Sechium edule HOM05D003922 ORTHO05D004492 3.2e-54 215.3 146 71.2
Thhalv10017374m.g Eutrema salsugineum HOM05D003922 ORTHO05D004492 4.1e-54 214.9 150 68.0
AL1G15640 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 5.4e-54 214.5 150 67.3
PSO573G0028 Papaver somniferum HOM05D003922 ORTHO05D004492 5.4e-54 214.5 145 71.0
TWI63G0384 Tripterygium wilfordii HOM05D003922 ORTHO05D004492 5.4e-54 214.5 150 68.7
CARHR005250 Cardamine hirsuta HOM05D003922 ORTHO05D004492 7.1e-54 214.2 149 67.1
PSO017G0931 Papaver somniferum HOM05D003922 ORTHO05D004492 7.1e-54 214.2 145 71.7
Sp1g04550 Schrenkiella parvula HOM05D003922 ORTHO05D004492 7.1e-54 214.2 146 68.5
Oeu015712.2 Olea europaea HOM05D003922 ORTHO05D004492 9.2e-54 213.8 222 55.0
Aa31LG5G5270 Aethionema arabicum HOM05D003922 ORTHO05D004492 1.6e-53 213.0 150 66.0
C04p18050 Brassica napus HOM05D003922 ORTHO05D004492 1.6e-53 213.0 150 66.7
BolC4t23353H Brassica oleracea HOM05D003922 ORTHO05D004492 1.6e-53 213.0 150 66.7
Nn2g13969 Nelumbo nucifera HOM05D003922 ORTHO05D004492 1.6e-53 213.0 146 69.9
AL4G26980 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 2.1e-53 212.6 150 66.0
BcaB02g10413 Brassica carinata HOM05D003922 ORTHO05D004492 2.1e-53 212.6 150 66.7
Carub.0004s1303 Capsella rubella HOM05D003922 ORTHO05D004492 2.1e-53 212.6 148 68.9
Cfa015673 Carpinus fangiana HOM05D003922 ORTHO05D004492 2.1e-53 212.6 150 68.7
CAN.G759.3 Capsicum annuum HOM05D003922 ORTHO05D004492 3.5e-53 211.8 150 67.3
BraA09t42062Z Brassica rapa HOM05D003922 ORTHO05D004492 4.6e-53 211.5 157 65.6
ClCG11G013550 Citrullus lanatus HOM05D003922 ORTHO05D004492 6.0e-53 211.1 150 69.3
BcaC02g11282 Brassica carinata HOM05D003922 ORTHO05D004492 7.8e-53 210.7 150 66.0
Nitab4.5_0004700g0050 Nicotiana tabacum HOM05D003922 ORTHO05D004492 7.8e-53 210.7 170 65.3
Sc19g0002260 Simmondsia chinensis HOM05D003922 ORTHO05D004492 7.8e-53 210.7 150 69.3
CsaV3_5G030170 Cucumis sativus L. HOM05D003922 ORTHO05D004492 1.3e-52 209.9 150 68.7
AUR62002412 Chenopodium quinoa HOM05D003922 ORTHO05D004492 3.0e-52 208.8 145 71.7
MELO3C011855.2 Cucumis melo HOM05D003922 ORTHO05D004492 3.0e-52 208.8 150 68.0
RcHm_v2.0_Chr4g0405841 Rosa chinensis HOM05D003922 ORTHO05D004492 3.0e-52 208.8 150 67.3
CARHR125410 Cardamine hirsuta HOM05D003922 ORTHO05D004492 5.1e-52 208.0 148 64.9
SalBow6G3114 Salvia bowleyana HOM05D003922 ORTHO05D004492 6.6e-52 207.6 147 71.4
BolC8t52690H Brassica oleracea HOM05D003922 ORTHO05D004492 8.6e-52 207.2 160 63.1
Atru.chr4.1453 Acer truncatum HOM05D003922 ORTHO05D004492 1.1e-51 206.8 150 67.3
QL10p056544 Quercus lobata HOM05D003922 ORTHO05D004492 1.1e-51 206.8 148 68.2
SGA_v2.0_scaffold25G11004 Striga asiatica HOM05D003922 ORTHO05D004492 1.1e-51 206.8 150 67.3
ATR0743G180 Amborella trichopoda HOM05D003922 ORTHO05D004492 1.5e-51 206.5 139 71.2
unitig_578.g16270 Utricularia gibba HOM05D003922 ORTHO05D004492 1.5e-51 206.5 142 69.0
CiPaw.01G168800 Carya illinoinensis HOM05D003922 ORTHO05D004492 2.5e-51 205.7 150 66.7
DCAR_027517 Daucus carota HOM05D003922 ORTHO05D004492 2.5e-51 205.7 148 64.2
CAN.G1401.2 Capsicum annuum HOM05D003922 ORTHO05D004492 5.6e-51 204.5 150 66.7
FAN21G3935 Fragaria x ananassa HOM05D003922 ORTHO05D004492 7.3e-51 204.1 143 68.5
Os11g0256200 Oryza sativa ssp. japonica HOM05D003922 ORTHO05D004492 7.3e-51 204.1 148 64.9
BraA05t20315Z Brassica rapa HOM05D003922 ORTHO05D004492 9.6e-51 203.8 162 61.7
C08p51620 Brassica napus HOM05D003922 ORTHO05D004492 1.2e-50 203.4 161 62.7
MD04G1037100 Malus domestica HOM05D003922 ORTHO05D004492 1.2e-50 203.4 150 66.0
FvH4_3g34590 Fragaria vesca HOM05D003922 ORTHO05D004492 1.6e-50 203.0 143 67.8
FAN11G1624 Fragaria x ananassa HOM05D003922 ORTHO05D004492 1.6e-50 203.0 143 67.8
FAN25G1394 Fragaria x ananassa HOM05D003922 ORTHO05D004492 1.6e-50 203.0 143 67.8
FAN02G1921 Fragaria x ananassa HOM05D003922 ORTHO05D004492 2.1e-50 202.6 145 66.9
FAN06G3125 Fragaria x ananassa HOM05D003922 ORTHO05D004492 2.1e-50 202.6 145 66.9
SGA_v2.0_scaffold19G08849 Striga asiatica HOM05D003922 ORTHO05D004492 3.6e-50 201.8 161 62.7
FAN16G1833 Fragaria x ananassa HOM05D003922 ORTHO05D004492 4.7e-50 201.4 143 67.1
COL.COLO4_38113 Corchorus olitorius HOM05D003922 ORTHO05D004492 1.8e-49 199.5 135 71.9
Prupe.1G185700 Prunus persica HOM05D003922 ORTHO05D004492 3.1e-49 198.7 148 65.5
Carub.0001s0508 Capsella rubella HOM05D003922 ORTHO05D004492 9.0e-49 197.2 150 63.3
CDE09G1276 Ceratophyllum demersum HOM05D003922 ORTHO05D004492 1.5e-48 196.4 146 64.4
Lj3g0023756 Lotus japonicus HOM05D003922 ORTHO05D004492 1.5e-48 196.4 149 63.8
Ca_14117_v3 Cicer arietinum L. HOM05D003922 ORTHO05D004492 2.6e-48 195.7 149 63.1
AT2G43720 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 5.8e-48 194.5 144 63.9
Phvul.005G007000 Phaseolus vulgaris HOM05D003922 ORTHO05D004492 5.8e-48 194.5 149 63.1
THA.LOC104804105 Tarenaya hassleriana HOM05D003922 ORTHO05D004492 7.6e-48 194.1 145 65.5
TPR.G16707 Trifolium pratense HOM05D003922 ORTHO05D004492 7.6e-48 194.1 149 61.7
Glyma.06G319900 Glycine max HOM05D003922 ORTHO05D004492 1.7e-47 193.0 149 61.1
BcaC02g07156 Brassica carinata HOM05D000941 ORTHO05D004492 2.2e-47 192.6 150 62.0
BolC4t28571H Brassica oleracea HOM05D003922 ORTHO05D004492 2.2e-47 192.6 150 62.0
arahy.Tifrunner.gnm1.ann1.D9AT9V Arachis hypogaea HOM05D003922 ORTHO05D004492 3.8e-47 191.8 149 59.7
Lalb_Chr18g0048821 Lupinus albus HOM05D003922 ORTHO05D004492 3.8e-47 191.8 149 61.1
Peaxi162Scf00579g00013 Petunia axillaris HOM05D003922 ORTHO05D004492 3.8e-47 191.8 148 66.2
Psat5g230680 Pisum sativum HOM05D003922 ORTHO05D004492 6.4e-47 191.0 149 61.7
Sp4g25790 Schrenkiella parvula HOM05D003922 ORTHO05D004492 6.4e-47 191.0 144 63.9
CARHR138910 Cardamine hirsuta HOM05D003922 ORTHO05D004492 8.4e-47 190.7 144 61.8
Duzib151G1155 Durio zibethinus HOM05D003922 ORTHO05D004492 8.4e-47 190.7 180 54.4
Medtr3g009130 Medicago truncatula HOM05D003922 ORTHO05D004492 8.4e-47 190.7 149 61.1
Glyma.02G058200 Glycine max HOM05D003922 ORTHO05D004492 1.1e-46 190.3 149 60.4
AL4G42550 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 1.4e-46 189.9 144 61.1
Lj6A207G21 Lonicera japonica HOM05D003922 ORTHO05D004492 1.4e-46 189.9 193 55.4
C04p70710 Brassica napus HOM05D003922 ORTHO05D004492 5.4e-46 188.0 151 61.6
A04p33020 Brassica napus HOM05D003922 ORTHO05D004492 7.1e-46 187.6 143 62.9
BraA04t18761Z Brassica rapa HOM05D003922 ORTHO05D004492 7.1e-46 187.6 143 62.9
HPP92_023724 Vanilla planifolia HOM05D003922 ORTHO05D004492 7.1e-46 187.6 148 63.5
VMungo1080G1004 Vigna mungo HOM05D003922 ORTHO05D004492 3.5e-45 185.3 149 58.4
Glyma.04G117900 Glycine max HOM05D003922 ORTHO05D004492 7.8e-45 184.1 149 58.4
Zm00001eb169120 Zea mays HOM05D003922 ORTHO05D004492 7.8e-45 184.1 140 59.3
Carub.0004s2626 Capsella rubella HOM05D003922 ORTHO05D004492 1.0e-44 183.7 144 59.7
Thhalv10001669m.g Eutrema salsugineum HOM05D003922 ORTHO05D004492 1.0e-44 183.7 143 62.2
BcaB06g29344 Brassica carinata HOM05D003922 ORTHO05D004492 1.7e-44 183.0 143 60.8
CiPaw.02G099200 Carya illinoinensis HOM05D003922 ORTHO05D004492 1.1e-43 180.3 143 62.9
Zm00001eb169100 Zea mays HOM05D003922 ORTHO05D004492 1.9e-43 179.5 140 59.3
MBI07_g11491_MAGBIO Magnolia biondii HOM05D003922 ORTHO05D004492 2.9e-39 165.6 141 59.6
BcaC07g42117 Brassica carinata HOM05D003922 ORTHO05D004492 2.7e-37 159.1 151 57.6
arahy.Tifrunner.gnm1.ann1.1Q5EFH Arachis hypogaea HOM05D003922 ORTHO05D004492 2.3e-36 156.0 149 51.0
Lj3P164T1 Lonicera japonica HOM05D003922 ORTHO05D004492 1.1e-35 153.7 104 68.3
Lju359P1T4 Lonicera japonica HOM05D003922 ORTHO05D004492 1.1e-35 153.7 104 68.3
BcaC07g42114 Brassica carinata HOM05D003922 ORTHO05D004492 5.6e-35 151.4 108 65.7
Nitab4.5_0000013g0490 Nicotiana tabacum HOM05D003922 ORTHO05D004492 1.6e-34 149.8 89 83.1
Nitab4.5_0007474g0040 Nicotiana tabacum HOM05D003922 ORTHO05D004492 4.8e-34 148.3 133 58.6
arahy.Tifrunner.gnm1.ann1.H4TYTD Arachis hypogaea HOM05D003922 ORTHO05D004492 1.8e-33 146.4 143 51.0
A05p13780 Brassica napus HOM05D003922 ORTHO05D004492 2.4e-33 146.0 107 62.6
Glyma.06G288100 Glycine max HOM05D003922 ORTHO05D004492 9.0e-33 144.1 135 55.6
Glyma.06G288300 Glycine max HOM05D003922 ORTHO05D004492 9.0e-33 144.1 135 55.6
Solyc06g053490.4 Solanum lycopersicum HOM05D003922 ORTHO05D004492 1.2e-32 143.7 89 76.4
CDE04G0234 Ceratophyllum demersum HOM05D003922 ORTHO05D004492 4.5e-32 141.7 89 74.2
Haze_00850 Corylus avellana HOM05D003922 ORTHO05D004492 5.8e-32 141.4 99 67.7
Aa31LG1G25440 Aethionema arabicum HOM05D003922 ORTHO05D004492 7.6e-32 141.0 104 66.3
Haze_00864 Corylus avellana HOM05D003922 ORTHO05D004492 5.5e-30 134.8 89 70.8
Glyma.06G320000 Glycine max HOM05D003922 ORTHO05D004492 2.3e-28 129.4 145 44.8
Glyma.06G288000 Glycine max HOM05D003922 ORTHO05D004492 1.4e-25 120.2 149 40.9
arahy.Tifrunner.gnm1.ann1.GG9VXM Arachis hypogaea HOM05D003922 ORTHO05D004492 6.9e-25 117.9 149 43.6
Psat3g002600 Pisum sativum HOM05D003321 ORTHO05D004492 5.8e-24 114.8 82 63.4
SEGI_40113 Sequoiadendron giganteum HOM05D003922 ORTHO05D004492 7.6e-24 114.4 88 56.8
Carub.0001s0509 Capsella rubella HOM05D003922 ORTHO05D004492 6.5e-23 111.3 91 54.9
AT1G05740 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 1.9e-22 109.8 103 51.5
Pp3c22_16840 Physcomitrium patens HOM05D003922 ORTHO05D004492 9.3e-22 107.5 139 37.4
AagrBONN_evm.TU.Sc2ySwM_228.3693 Anthoceros agrestis HOM05D003922 ORTHO05D004492 2.5e-19 99.4 134 32.8
SMO174G0123 Selaginella moellendorffii HOM05D003922 ORTHO05D004492 9.7e-19 97.4 138 32.6
Glyma.06G288200 Glycine max HOM05D003922 ORTHO05D004492 9.0e-17 90.9 149 35.6
SMO174G0129 Selaginella moellendorffii HOM05D003922 ORTHO05D004492 2.6e-16 89.4 149 30.9
arahy.Tifrunner.gnm1.ann1.V6LTI0 Arachis hypogaea HOM05D003922 ORTHO05D004492 8.5e-15 84.3 72 55.6
Lsat_1_v5_gn_3_36701 Lactuca sativa HOM05D003922 ORTHO05D004492 1.9e-14 83.2 102 46.1
SMO116G0121 Selaginella moellendorffii HOM05D003922 ORTHO05D004492 4.2e-14 82.0 107 32.7
BcaB05g24674 Brassica carinata HOM05D001689 ORTHO05D004492 1.6e-13 80.1 52 69.2
arahy.Tifrunner.gnm1.ann1.DMY77W Arachis hypogaea HOM05D003922 ORTHO05D004492 5.1e-12 75.1 87 43.7
Mapoly0006s0297 Marchantia polymorpha HOM05D003922 ORTHO05D004492 8.8e-12 74.3 137 28.5
BcaB05g25136 Brassica carinata HOM05D003922 ORTHO05D004492 1.7e-10 70.1 44 68.2
CBR_g3774 Chara braunii HOM05D003922 ORTHO05D004492 1.7e-10 70.1 132 26.5
CiPaw.16G066500 Carya illinoinensis HOM05D003922 ORTHO05D004492 9.1e-09 64.3 81 46.9
Cre12.g551900 Chlamydomonas reinhardtii HOM05D003922 ORTHO05D004492 5.9e-08 61.6 132 27.3
AL1G15650 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 2.2e-07 59.7 82 42.7
AUR62023777 Chenopodium quinoa HOM05D003922 ORTHO05D004492 2.9e-07 59.3 46 58.7


User provided reference genes

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