Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc03_g14060 Coffea canephora HOM05D005009 ORTHO05D006203 7.8e-106 387.1 191 100.0
MSTRG.20500 Avicennia marina HOM05D005009 ORTHO05D006203 2.6e-101 372.1 191 94.8
CiPaw.14G009400 Carya illinoinensis HOM05D005009 ORTHO05D006203 3.4e-101 371.7 191 95.3
Nitab4.5_0002838g0060 Nicotiana tabacum HOM05D005009 ORTHO05D006203 9.8e-101 370.2 188 95.2
Eucgr.E03953 Eucalyptus grandis HOM05D005009 ORTHO05D006203 1.7e-100 369.4 191 94.2
Solyc01g096610.4 Solanum lycopersicum HOM05D005009 ORTHO05D006203 1.7e-100 369.4 191 93.2
Sopen01g040340 Solanum pennellii HOM05D005009 ORTHO05D006203 1.7e-100 369.4 191 93.2
PGSC0003DMG401003286 Solanum tuberosum HOM05D005009 ORTHO05D006203 1.7e-100 369.4 191 93.2
Dinv11234 Davidia involucrata HOM05D005009 ORTHO05D006203 2.9e-100 368.6 191 94.2
Dinv32009 Davidia involucrata HOM05D005009 ORTHO05D006203 2.9e-100 368.6 191 95.3
Nn7g36825 Nelumbo nucifera HOM05D005009 ORTHO05D006203 2.9e-100 368.6 191 94.2
GSVIVG01036607001 Vitis vinifera HOM05D005009 ORTHO05D006203 2.9e-100 368.6 191 95.3
Haze_02993 Corylus avellana HOM05D005009 ORTHO05D006203 3.7e-100 368.2 190 94.7
Lsat_1_v5_gn_1_117041 Lactuca sativa HOM05D005009 ORTHO05D006203 4.9e-100 367.9 189 93.7
MBI19_g44926_MAGBIO Magnolia biondii HOM05D005009 ORTHO05D006203 6.4e-100 367.5 190 95.3
Migut.B01192 Erythranthe guttata HOM05D005009 ORTHO05D006203 8.3e-100 367.1 191 92.1
Phvul.011G192750 Phaseolus vulgaris HOM05D005009 ORTHO05D006203 1.4e-99 366.3 191 94.2
Prupe.2G043300 Prunus persica HOM05D005009 ORTHO05D006203 1.4e-99 366.3 191 94.2
PSO384G0249 Papaver somniferum HOM05D005009 ORTHO05D006203 2.4e-99 365.5 191 93.7
ATR0307G112 Amborella trichopoda HOM05D005009 ORTHO05D006203 3.2e-99 365.2 191 93.7
ECA248G2538 Erigeron canadensis HOM05D005009 ORTHO05D006203 3.2e-99 365.2 189 93.1
Aqoxy2G00437 Aquilegia oxysepala HOM05D005009 ORTHO05D006203 4.1e-99 364.8 191 93.2
DCAR_006603 Daucus carota HOM05D005009 ORTHO05D006203 4.1e-99 364.8 191 93.7
PGR031G2406 Punica granatum HOM05D005009 ORTHO05D006203 4.1e-99 364.8 191 92.7
TWI15G1146 Tripterygium wilfordii HOM05D005009 ORTHO05D006203 4.1e-99 364.8 191 92.7
FvH4_7g03830 Fragaria vesca HOM05D005009 ORTHO05D006203 5.4e-99 364.4 189 94.7
FAN03G3221 Fragaria x ananassa HOM05D005009 ORTHO05D006203 5.4e-99 364.4 189 94.7
FAN06G1190 Fragaria x ananassa HOM05D005009 ORTHO05D006203 5.4e-99 364.4 189 94.7
PSO339G0131 Papaver somniferum HOM05D005009 ORTHO05D006203 5.4e-99 364.4 191 93.2
Atru.chr12.1310 Acer truncatum HOM05D005009 ORTHO05D006203 7.0e-99 364.0 191 93.7
CSS0011052 Camellia sinensis var. sinensis HOM05D005009 ORTHO05D006203 7.0e-99 364.0 189 94.2
Eucgr.G03210 Eucalyptus grandis HOM05D005009 ORTHO05D006203 1.2e-98 363.2 191 92.1
Glyma.09G090300 Glycine max HOM05D005009 ORTHO05D006203 1.2e-98 363.2 191 92.7
Psat4g146480 Pisum sativum HOM05D005009 ORTHO05D006203 1.2e-98 363.2 191 93.2
SGA_v2.0_scaffold408G51079 Striga asiatica HOM05D005009 ORTHO05D006203 1.2e-98 363.2 191 91.6
QL04p021447 Quercus lobata HOM05D005009 ORTHO05D006203 1.6e-98 362.8 190 93.2
QL07p029267 Quercus lobata HOM05D005009 ORTHO05D006203 1.6e-98 362.8 190 93.2
RcHm_v2.0_Chr1g0327201 Rosa chinensis HOM05D005009 ORTHO05D006203 1.6e-98 362.8 189 94.2
Thecc.03G114300 Theobroma cacao HOM05D005009 ORTHO05D006203 1.6e-98 362.8 191 92.1
Actinidia06220 Actinidia chinensis HOM05D005009 ORTHO05D006203 2.0e-98 362.5 191 92.7
Duzib084G0080 Durio zibethinus HOM05D005009 ORTHO05D006203 2.0e-98 362.5 191 92.7
Manes.11G007500 Manihot esculenta HOM05D005009 ORTHO05D006203 2.0e-98 362.5 191 92.7
Medtr8g040630 Medicago truncatula HOM05D005009 ORTHO05D006203 2.0e-98 362.5 189 93.7
TAR633G2352 Trochodendron aralioides HOM05D005009 ORTHO05D006203 2.0e-98 362.5 191 92.1
FAN10G3328 Fragaria x ananassa HOM05D005009 ORTHO05D006203 2.7e-98 362.1 189 94.2
Lj3g0027433 Lotus japonicus HOM05D005009 ORTHO05D006203 2.7e-98 362.1 191 92.1
TPR.G8532 Trifolium pratense HOM05D005009 ORTHO05D006203 2.7e-98 362.1 191 92.7
Potri.003G193900 Populus trichocarpa HOM05D005009 ORTHO05D006203 7.8e-98 360.5 189 92.6
MBI19_g37444_MAGBIO Magnolia biondii HOM05D005009 ORTHO05D006203 1.0e-97 360.1 195 92.3
Duzib068G0995 Durio zibethinus HOM05D005009 ORTHO05D006203 1.3e-97 359.8 191 92.1
Gohir.A03G073900 Gossypium hirsutum HOM05D005009 ORTHO05D006203 1.3e-97 359.8 191 92.1
Gohir.D03G100300 Gossypium hirsutum HOM05D005009 ORTHO05D006203 1.3e-97 359.8 191 92.1
CDE08G1579 Ceratophyllum demersum HOM05D005009 ORTHO05D006203 1.7e-97 359.4 191 91.1
Lalb_Chr19g0132931 Lupinus albus HOM05D005009 ORTHO05D006203 1.7e-97 359.4 189 92.6
EL10Ac2g02762 Beta vulgaris HOM05D005009 ORTHO05D006203 2.3e-97 359.0 189 92.1
Ciclev10002585m.g Citrus clementina HOM05D005009 ORTHO05D006203 3.9e-97 358.2 191 91.6
Gorai.003G105400 Gossypium raimondii HOM05D005009 ORTHO05D006203 3.9e-97 358.2 191 91.6
HanXRQChr11g0341231 Helianthus annuus HOM05D005009 ORTHO05D006203 6.6e-97 357.5 189 91.0
THA.LOC104826749 Tarenaya hassleriana HOM05D005009 ORTHO05D006203 6.6e-97 357.5 191 90.1
AUR62031741 Chenopodium quinoa HOM05D005009 ORTHO05D006203 8.6e-97 357.1 191 91.1
Zm00001eb317990 Zea mays HOM05D005009 ORTHO05D006203 8.6e-97 357.1 191 90.1
COL.COLO4_32171 Corchorus olitorius HOM05D000011 ORTHO05D006203 1.1e-96 356.7 188 91.0
SEGI_18977 Sequoiadendron giganteum HOM05D005009 ORTHO05D006203 1.1e-96 356.7 188 89.9
Carub.0003s1167 Capsella rubella HOM05D005009 ORTHO05D006203 1.9e-96 355.9 191 89.5
unitig_22.g5330 Utricularia gibba HOM05D005009 ORTHO05D006203 1.9e-96 355.9 193 90.7
AL3G23960 Arabidopsis lyrata HOM05D005009 ORTHO05D006203 2.5e-96 355.5 191 89.0
AUR62032626 Chenopodium quinoa HOM05D005009 ORTHO05D006203 5.6e-96 354.4 191 90.1
ClCG05G027020 Citrullus lanatus HOM05D005009 ORTHO05D006203 5.6e-96 354.4 191 90.6
AT3G12300 Arabidopsis thaliana HOM05D005009 ORTHO05D006203 9.5e-96 353.6 191 88.5
GSVIVG01028667001 Vitis vinifera HOM05D005009 ORTHO05D006203 1.6e-95 352.8 188 92.6
Sp3g10520 Schrenkiella parvula HOM05D005009 ORTHO05D006203 2.8e-95 352.1 191 88.5
Ca_24007_v3 Cicer arietinum L. HOM05D005009 ORTHO05D006203 3.6e-95 351.7 188 90.4
CsaV3_5G036940 Cucumis sativus L. HOM05D005009 ORTHO05D006203 3.6e-95 351.7 191 90.1
arahy.Tifrunner.gnm1.ann1.CDA2TW Arachis hypogaea HOM05D005009 ORTHO05D006203 1.1e-94 350.1 210 84.3
Sabra03G0144600 Salix brachista HOM05D005009 ORTHO05D006203 1.1e-94 350.1 201 86.6
Hma1.2p1_0837F.1_g226250 Hydrangea macrophylla HOM05D005009 ORTHO05D006203 1.8e-94 349.4 201 87.1
Rhsim07G0069300 Rhododendron simsii HOM05D005009 ORTHO05D006203 3.1e-94 348.6 216 81.5
BcaB04g18685 Brassica carinata HOM05D005009 ORTHO05D006203 5.2e-94 347.8 191 86.9
Hund13390 Selenicereus undatus HOM05D005009 ORTHO05D006203 5.2e-94 347.8 188 89.9
Thhalv10021577m.g Eutrema salsugineum HOM05D005009 ORTHO05D006203 6.8e-94 347.4 189 87.3
BcaC01g04053 Brassica carinata HOM05D005009 ORTHO05D006203 1.5e-93 346.3 191 85.9
Mapoly0109s0062 Marchantia polymorpha HOM05D005009 ORTHO05D006203 1.5e-93 346.3 191 85.3
BcaC09g48230 Brassica carinata HOM05D005009 ORTHO05D006203 2.0e-93 345.9 191 86.4
CANSAT01G2494 Cannabis sativa HOM05D005009 ORTHO05D006203 2.0e-93 345.9 189 89.4
BolC1t05245H Brassica oleracea HOM05D005009 ORTHO05D006203 4.4e-93 344.7 188 86.7
MELO3C034019.2 Cucumis melo HOM05D005009 ORTHO05D006203 4.4e-93 344.7 198 86.9
C01p53010 Brassica napus HOM05D005009 ORTHO05D006203 5.8e-93 344.4 188 86.7
Ah.01g018000 Amaranthus hybridus HOM05D005009 ORTHO05D006203 9.8e-93 343.6 183 90.7
A03p37590 Brassica napus HOM05D005009 ORTHO05D006203 1.3e-92 343.2 188 86.2
BolC3t16835H Brassica oleracea HOM05D005009 ORTHO05D006203 1.3e-92 343.2 188 86.2
C03p45580 Brassica napus HOM05D005009 ORTHO05D006203 2.2e-92 342.4 188 85.6
arahy.Tifrunner.gnm1.ann1.SBUN5C Arachis hypogaea HOM05D005009 ORTHO05D006203 2.9e-92 342.0 232 77.2
A06p13990 Brassica napus HOM05D005009 ORTHO05D006203 1.4e-91 339.7 188 86.2
AagrBONN_evm.TU.Sc2ySwM_340.215 Anthoceros agrestis HOM05D005009 ORTHO05D006203 5.4e-91 337.8 191 83.8
Pp3c16_8300 Physcomitrium patens HOM05D005009 ORTHO05D006203 5.4e-91 337.8 191 82.2
Sed0026819 Sechium edule HOM05D005009 ORTHO05D006203 9.2e-91 337.0 214 79.9
Peaxi162Scf00220g00315 Petunia axillaris HOM05D005009 ORTHO05D006203 2.1e-90 335.9 173 93.6
Cre07.g351650 Chlamydomonas reinhardtii HOM05D005009 ORTHO05D006203 2.3e-89 332.4 191 80.6
PRCOL_00001494 Prasinoderma coloniale HOM05D005009 ORTHO05D006203 5.1e-89 331.3 189 81.0
SMO137G0355 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 6.2e-87 324.3 189 79.4
MCO01G737 Micromonas commoda HOM05D005009 ORTHO05D006203 2.3e-86 322.4 191 78.0
Aa31LG3G6530 Aethionema arabicum HOM05D005009 ORTHO05D006203 6.8e-86 320.9 191 81.2
vmacro21942 Vaccinium macrocarpon HOM05D005009 ORTHO05D006203 6.8e-86 320.9 181 87.8
vmacro23458 Vaccinium macrocarpon HOM05D005009 ORTHO05D006203 6.8e-86 320.9 181 87.8
Os09g0510200 Oryza sativa ssp. japonica HOM05D005009 ORTHO05D006203 5.8e-85 317.8 173 87.3
Pp3c7_7130 Physcomitrium patens HOM05D005009 ORTHO05D006203 8.4e-84 313.9 188 76.6
SMO137G0211 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 2.4e-83 312.4 188 76.1
VMungo1127G1850 Vigna mungo HOM05D005009 ORTHO05D006203 1.3e-81 306.6 167 90.4
CSS0003702 Camellia sinensis var. sinensis HOM05D005009 ORTHO05D006203 5.1e-81 304.7 160 92.5
Cpa.g.sc82.9 Carica papaya HOM05D005009 ORTHO05D006203 4.3e-80 301.6 160 91.2
SHI34551 Sapria himalayana HOM05D005009 ORTHO05D006203 6.9e-78 294.3 160 90.0
Glyma.13G184700 Glycine max HOM05D005009 ORTHO05D006203 1.4e-75 286.6 161 87.6
Lj9A658G62 Lonicera japonica HOM05D005009 ORTHO05D006203 1.6e-74 283.1 171 83.0
CAN.G134.28 Capsicum annuum HOM05D005009 ORTHO05D006203 4.6e-74 281.6 209 69.9
Haze_26638 Corylus avellana HOM05D005009 ORTHO05D006203 6.4e-68 261.2 188 68.1
Pp3c25_460 Physcomitrium patens HOM05D005009 ORTHO05D006203 5.3e-62 241.5 188 63.3
Sed0013386 Sechium edule HOM05D005009 ORTHO05D006203 2.6e-61 239.2 140 85.0
SMO232G0039 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 1.3e-57 226.9 183 59.6
HPP92_011758 Vanilla planifolia HOM05D005009 ORTHO05D006203 5.1e-57 224.9 149 76.5
SMO352G0037 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 3.3e-56 222.2 206 51.9
CDE08G0779 Ceratophyllum demersum HOM05D005009 ORTHO05D006203 8.1e-55 217.6 113 90.3
Glyma.13G188400 Glycine max HOM05D005009 ORTHO05D006203 1.3e-52 210.3 129 82.9
Oeu064146.2 Olea europaea HOM05D005009 ORTHO05D006203 2.2e-52 209.5 112 89.3
Nitab4.5_0004168g0130 Nicotiana tabacum HOM05D005009 ORTHO05D006203 1.1e-51 207.2 109 92.7
BraA03t12913Z Brassica rapa HOM05D005009 ORTHO05D006203 7.1e-51 204.5 105 88.6
MD02G1276800 Malus domestica HOM05D005009 ORTHO05D006203 1.6e-50 203.4 109 92.7
HPP92_011756 Vanilla planifolia HOM05D005009 ORTHO05D006203 1.6e-50 203.4 109 92.7
ClCG05G014250 Citrullus lanatus HOM05D005009 ORTHO05D006203 8.7e-49 197.6 158 65.8
MD02G1276900 Malus domestica HOM05D005009 ORTHO05D006203 2.8e-39 166.0 82 95.1
Actinidia07967 Actinidia chinensis HOM05D005009 ORTHO05D006203 4.8e-39 165.2 82 95.1
Glyma.13G192001 Glycine max HOM05D005009 ORTHO05D006203 6.3e-39 164.9 82 93.9
Cfa001149 Carpinus fangiana HOM05D005009 ORTHO05D006203 8.2e-39 164.5 80 96.2
HPP92_011747 Vanilla planifolia HOM05D005009 ORTHO05D006203 3.1e-38 162.5 83 90.4
Glyma.13G188051 Glycine max HOM05D005009 ORTHO05D006203 1.6e-34 150.2 84 88.1
Sc11g0006340 Simmondsia chinensis HOM05D005009 ORTHO05D006203 2.7e-34 149.4 81 92.6
Pp3c6_12450 Physcomitrium patens HOM05D005009 ORTHO05D006203 5.1e-33 145.2 157 45.9
Glyma.13G190100 Glycine max HOM05D005009 ORTHO05D006203 8.8e-33 144.4 74 90.5
CARHR086850 Cardamine hirsuta HOM05D005009 ORTHO05D006203 3.7e-31 139.0 71 88.7
MD07G1044300 Malus domestica HOM05D005009 ORTHO05D006203 8.2e-31 137.9 71 91.5
Prupe.3G123900 Prunus persica HOM05D005009 ORTHO05D006203 8.5e-28 127.9 87 79.3
BcaC09g48229 Brassica carinata HOM05D005009 ORTHO05D006203 2.1e-26 123.2 68 83.8
C01p53030 Brassica napus HOM05D005009 ORTHO05D006203 2.1e-26 123.2 68 83.8
BolC1t05246H Brassica oleracea HOM05D005009 ORTHO05D006203 6.1e-26 121.7 68 82.4
Manes.04G156350 Manihot esculenta HOM05D005009 ORTHO05D006203 8.0e-18 94.7 51 82.4
arahy.Tifrunner.gnm1.ann1.WDN55T Arachis hypogaea HOM05D000001 ORTHO05D009381 6.7e-17 91.7 47 87.2
A03p22660 Brassica napus HOM05D005009 ORTHO05D033042 6.5e-12 75.1 38 86.8
A10p02030 Brassica napus HOM05D005009 ORTHO05D006203 6.5e-12 75.1 38 86.8
C03p63540 Brassica napus HOM05D005009 ORTHO05D033042 6.5e-12 75.1 38 86.8
BraA02t08111Z Brassica rapa HOM05D005009 ORTHO05D033042 6.5e-12 75.1 38 86.8
A01p39420 Brassica napus HOM05D005009 ORTHO05D006203 8.5e-12 74.7 37 89.2


User provided reference genes

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