Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc03_g14030 Coffea canephora HOM05D004197 ORTHO05D004975 9.3e-65 250.0 120 100.0
Cc02_g26370 Coffea canephora HOM05D004197 ORTHO05D004975 1.8e-60 235.7 120 94.2
Lsat_1_v5_gn_6_33001 Lactuca sativa HOM05D004197 ORTHO05D004975 3.0e-55 218.4 120 86.7
HanXRQChr10g0286001 Helianthus annuus HOM05D004197 ORTHO05D004975 3.9e-55 218.0 120 85.8
MSTRG.27564 Avicennia marina HOM05D004197 ORTHO05D004975 3.3e-54 214.9 120 86.7
Oeu016610.1 Olea europaea HOM05D004197 ORTHO05D004975 9.7e-54 213.4 120 83.3
ECA240G1468 Erigeron canadensis HOM05D004197 ORTHO05D004975 2.2e-53 212.2 120 82.5
Gohir.A10G143100 Gossypium hirsutum HOM05D004197 ORTHO05D004975 2.2e-53 212.2 120 85.8
Gorai.011G136700 Gossypium raimondii HOM05D004197 ORTHO05D004975 2.2e-53 212.2 120 85.8
Gorai.012G053000 Gossypium raimondii HOM05D004197 ORTHO05D004975 2.2e-53 212.2 120 85.8
Hma1.2p1_0307F.1_g119895 Hydrangea macrophylla HOM05D004197 ORTHO05D004975 2.8e-53 211.8 120 84.2
GSVIVG01038138001 Vitis vinifera HOM05D004197 ORTHO05D004975 2.8e-53 211.8 120 84.2
ECA247G1539 Erigeron canadensis HOM05D004197 ORTHO05D004975 6.3e-53 210.7 120 83.3
Gohir.A05G367700 Gossypium hirsutum HOM05D004197 ORTHO05D004975 6.3e-53 210.7 120 85.0
Atru.chr12.1293 Acer truncatum HOM05D004197 ORTHO05D004975 8.2e-53 210.3 120 82.5
Gohir.D10G123800 Gossypium hirsutum HOM05D004197 ORTHO05D004975 8.2e-53 210.3 120 85.0
Duzib151G0052 Durio zibethinus HOM05D004197 ORTHO05D004975 1.1e-52 209.9 120 84.2
Gohir.D04G047600 Gossypium hirsutum HOM05D004197 ORTHO05D004975 1.1e-52 209.9 120 85.0
RcHm_v2.0_Chr1g0333831 Rosa chinensis HOM05D004197 ORTHO05D004975 1.1e-52 209.9 120 83.3
Thecc.04G166300 Theobroma cacao HOM05D004197 ORTHO05D004975 1.1e-52 209.9 120 84.2
FvH4_7g06200 Fragaria vesca HOM05D004197 ORTHO05D004975 1.4e-52 209.5 120 82.5
FAN01G1948 Fragaria x ananassa HOM05D004197 ORTHO05D004975 1.4e-52 209.5 120 82.5
FAN06G1493 Fragaria x ananassa HOM05D004197 ORTHO05D004975 1.4e-52 209.5 120 82.5
Duzib212G0574 Durio zibethinus HOM05D004197 ORTHO05D004975 1.8e-52 209.1 120 84.2
CiPaw.11G096400 Carya illinoinensis HOM05D004197 ORTHO05D004975 3.1e-52 208.4 120 83.3
FAN03G3355 Fragaria x ananassa HOM05D004197 ORTHO05D004975 3.1e-52 208.4 120 81.7
Nn1g09691 Nelumbo nucifera HOM05D004197 ORTHO05D004975 3.1e-52 208.4 120 82.5
Cpa.g.sc10.180 Carica papaya HOM05D004197 ORTHO05D004975 4.1e-52 208.0 120 82.5
Lsat_1_v5_gn_5_190681 Lactuca sativa HOM05D004197 ORTHO05D004975 4.1e-52 208.0 120 82.5
Hund04335 Selenicereus undatus HOM05D004197 ORTHO05D004975 5.3e-52 207.6 120 83.3
CSS0039414 Camellia sinensis var. sinensis HOM05D004197 ORTHO05D004975 6.9e-52 207.2 120 82.5
CSS0047181 Camellia sinensis var. sinensis HOM05D004197 ORTHO05D004975 6.9e-52 207.2 120 82.5
Rhsim03G0176800 Rhododendron simsii HOM05D004197 ORTHO05D004975 6.9e-52 207.2 118 83.9
Atru.chr4.2919 Acer truncatum HOM05D004197 ORTHO05D004975 9.0e-52 206.8 120 80.0
Eucgr.G02225 Eucalyptus grandis HOM05D004197 ORTHO05D004975 9.0e-52 206.8 120 81.7
Aa31LG10G13940 Aethionema arabicum HOM05D004197 ORTHO05D004975 1.5e-51 206.1 120 80.8
QL10p055721 Quercus lobata HOM05D004197 ORTHO05D004975 1.5e-51 206.1 118 83.1
AL5G41720 Arabidopsis lyrata HOM05D004197 ORTHO05D004975 2.0e-51 205.7 120 81.7
Carub.0005s2637 Capsella rubella HOM05D004197 ORTHO05D004975 2.0e-51 205.7 120 81.7
CiPaw.12G066300 Carya illinoinensis HOM05D004197 ORTHO05D004975 2.0e-51 205.7 120 81.7
Dinv33200 Davidia involucrata HOM05D004197 ORTHO05D004975 2.0e-51 205.7 117 82.9
TWI32G1250 Tripterygium wilfordii HOM05D004197 ORTHO05D004975 2.0e-51 205.7 120 82.5
Ah.13g073520 Amaranthus hybridus HOM05D004197 ORTHO05D004975 2.6e-51 205.3 120 81.7
AT3G59650 Arabidopsis thaliana HOM05D004197 ORTHO05D004975 2.6e-51 205.3 120 80.8
Prupe.1G206900 Prunus persica HOM05D004197 ORTHO05D004975 3.4e-51 204.9 120 81.7
CARHR170020 Cardamine hirsuta HOM05D004197 ORTHO05D004975 4.5e-51 204.5 120 80.8
Migut.F01587 Erythranthe guttata HOM05D004197 ORTHO05D004975 4.5e-51 204.5 120 80.0
Glyma.05G102000 Glycine max HOM05D004197 ORTHO05D004975 4.5e-51 204.5 115 85.2
Lalb_Chr04g0253841 Lupinus albus HOM05D004197 ORTHO05D004975 4.5e-51 204.5 120 82.5
PGR142G4086 Punica granatum HOM05D004197 ORTHO05D004975 4.5e-51 204.5 120 81.7
SalBow6G6028 Salvia bowleyana HOM05D004197 ORTHO05D004975 4.5e-51 204.5 119 80.7
Lalb_Chr10g0101191 Lupinus albus HOM05D004197 ORTHO05D004975 5.9e-51 204.1 120 80.8
PSO832G1844 Papaver somniferum HOM05D004197 ORTHO05D004975 7.7e-51 203.8 118 81.4
THA.LOC104804007 Tarenaya hassleriana HOM05D004197 ORTHO05D004975 7.7e-51 203.8 120 80.8
Ciclev10022904m.g Citrus clementina HOM05D004197 ORTHO05D004975 1.0e-50 203.4 120 81.7
EL10Ac6g15364 Beta vulgaris HOM05D004197 ORTHO05D004975 1.3e-50 203.0 120 81.7
TPR.G16667 Trifolium pratense HOM05D004197 ORTHO05D004975 1.3e-50 203.0 118 81.4
Lj1g0017974 Lotus japonicus HOM05D004197 ORTHO05D004975 1.7e-50 202.6 115 82.6
Manes.06G021100 Manihot esculenta HOM05D004197 ORTHO05D004975 1.7e-50 202.6 120 79.2
VMungo0251G3068 Vigna mungo HOM05D004197 ORTHO05D004975 2.2e-50 202.2 118 81.4
MELO3C017759.2 Cucumis melo HOM05D004197 ORTHO05D004975 2.9e-50 201.8 120 79.2
Glyma.17G164900 Glycine max HOM05D004197 ORTHO05D004975 2.9e-50 201.8 115 83.5
Cfa015042 Carpinus fangiana HOM05D004197 ORTHO05D004975 3.8e-50 201.4 120 80.8
Os03g0207250 Oryza sativa ssp. japonica HOM05D004197 ORTHO05D004975 3.8e-50 201.4 120 80.0
Phvul.003G238300 Phaseolus vulgaris HOM05D004197 ORTHO05D004975 3.8e-50 201.4 118 80.5
Psat1g223520 Pisum sativum HOM05D004197 ORTHO05D004975 3.8e-50 201.4 118 79.7
Zm00001eb400580 Zea mays HOM05D004197 ORTHO05D004975 3.8e-50 201.4 120 79.2
AUR62023799 Chenopodium quinoa HOM05D004197 ORTHO05D004975 5.0e-50 201.1 120 79.2
Ca_10539_v3 Cicer arietinum L. HOM05D004197 ORTHO05D004975 5.0e-50 201.1 118 79.7
BcaC07g40496 Brassica carinata HOM05D004197 ORTHO05D004975 6.5e-50 200.7 120 80.0
A09p51920 Brassica napus HOM05D004197 ORTHO05D004975 6.5e-50 200.7 120 80.0
C08p34650 Brassica napus HOM05D004197 ORTHO05D004975 6.5e-50 200.7 120 80.0
BolC8t51067H Brassica oleracea HOM05D004197 ORTHO05D004975 6.5e-50 200.7 120 80.0
BraA09t40628Z Brassica rapa HOM05D004197 ORTHO05D004975 6.5e-50 200.7 120 80.0
Ca_23424_v3 Cicer arietinum L. HOM05D004197 ORTHO05D004975 6.5e-50 200.7 118 80.5
Thhalv10006316m.g Eutrema salsugineum HOM05D004197 ORTHO05D004975 6.5e-50 200.7 120 80.0
BcaC08g44998 Brassica carinata HOM05D004197 ORTHO05D004975 8.5e-50 200.3 120 80.0
A07p24720 Brassica napus HOM05D000455 ORTHO05D000434 8.5e-50 200.3 120 80.0
C06p26290 Brassica napus HOM05D000455 ORTHO05D000434 8.5e-50 200.3 120 80.0
BolC6t37793H Brassica oleracea HOM05D004197 ORTHO05D004975 8.5e-50 200.3 120 80.0
BraA07t30117Z Brassica rapa HOM05D004197 ORTHO05D004975 8.5e-50 200.3 120 80.0
PSO017G5565 Papaver somniferum HOM05D004197 ORTHO05D004975 8.5e-50 200.3 118 79.7
PSO675G0737 Papaver somniferum HOM05D004197 ORTHO05D004975 8.5e-50 200.3 118 79.7
Sp5g03530 Schrenkiella parvula HOM05D004197 ORTHO05D004975 8.5e-50 200.3 120 80.0
Aqoxy7G00569 Aquilegia oxysepala HOM05D004197 ORTHO05D004975 1.1e-49 199.9 120 78.3
BcaB02g07455 Brassica carinata HOM05D004197 ORTHO05D004975 1.1e-49 199.9 120 80.0
CAN.G525.23 Capsicum annuum HOM05D004197 ORTHO05D004975 1.1e-49 199.9 120 79.2
Medtr8g022770 Medicago truncatula HOM05D004197 ORTHO05D004975 1.1e-49 199.9 118 79.7
PSO591G0183 Papaver somniferum HOM05D004197 ORTHO05D004975 1.1e-49 199.9 118 78.8
Peaxi162Scf00196g00222 Petunia axillaris HOM05D004197 ORTHO05D004975 1.9e-49 199.1 120 78.3
CDE02G1869 Ceratophyllum demersum HOM05D004197 ORTHO05D004975 3.2e-49 198.4 118 78.0
Nitab4.5_0007872g0010 Nicotiana tabacum HOM05D004197 ORTHO05D004975 3.2e-49 198.4 120 77.5
ATR0733G162 Amborella trichopoda HOM05D004197 ORTHO05D004975 4.2e-49 198.0 120 78.3
Psat4g166320 Pisum sativum HOM05D004197 ORTHO05D004975 4.2e-49 198.0 120 75.8
QL04p073242 Quercus lobata HOM05D004197 ORTHO05D004975 5.5e-49 197.6 118 79.7
EL10Ac3g06082 Beta vulgaris HOM05D004197 ORTHO05D004975 7.2e-49 197.2 120 78.3
Nitab4.5_0000902g0310 Nicotiana tabacum HOM05D004197 ORTHO05D004975 1.6e-48 196.1 120 76.7
Solyc04g014390.3 Solanum lycopersicum HOM05D004197 ORTHO05D004975 4.6e-48 194.5 120 76.7
Sopen04g006520 Solanum pennellii HOM05D004197 ORTHO05D004975 4.6e-48 194.5 120 76.7
arahy.Tifrunner.gnm1.ann1.4JR04K Arachis hypogaea HOM05D004197 ORTHO05D004975 6.1e-48 194.1 120 77.5
arahy.Tifrunner.gnm1.ann1.5DCW4K Arachis hypogaea HOM05D004197 ORTHO05D004975 6.1e-48 194.1 120 77.5
ClCG07G015230 Citrullus lanatus HOM05D004197 ORTHO05D004975 7.9e-48 193.7 120 75.8
CsaV3_4G002820 Cucumis sativus L. HOM05D004197 ORTHO05D004975 7.9e-48 193.7 120 76.7
arahy.Tifrunner.gnm1.ann1.E9H45Q Arachis hypogaea HOM05D004197 ORTHO05D004975 1.0e-47 193.4 118 78.0
TAR629G0957 Trochodendron aralioides HOM05D004197 ORTHO05D004975 1.0e-47 193.4 119 80.7
unitig_899.g14470 Utricularia gibba HOM05D004197 ORTHO05D004975 1.0e-47 193.4 120 75.8
Sp2g07880 Schrenkiella parvula HOM05D004197 ORTHO05D004975 1.4e-47 193.0 120 77.5
MD08G1230600 Malus domestica HOM05D004197 ORTHO05D004975 1.8e-47 192.6 117 76.9
HPP92_007604 Vanilla planifolia HOM05D004197 ORTHO05D004975 2.3e-47 192.2 120 73.3
TWI34G1638 Tripterygium wilfordii HOM05D004197 ORTHO05D004975 3.0e-47 191.8 144 69.4
Potri.013G126200 Populus trichocarpa HOM05D004197 ORTHO05D004975 5.1e-47 191.0 120 73.3
CANSAT80G2644 Cannabis sativa HOM05D004197 ORTHO05D004975 6.7e-47 190.7 120 75.8
PGSC0003DMG401023624 Solanum tuberosum HOM05D004197 ORTHO05D004975 6.7e-47 190.7 120 75.8
TAR362G0244 Trochodendron aralioides HOM05D000090 ORTHO05D001584 8.8e-47 190.3 111 82.9
Phvul.010G124900 Phaseolus vulgaris HOM05D004197 ORTHO05D004975 9.7e-46 186.8 111 81.1
Sed0002539 Sechium edule HOM05D004197 ORTHO05D004975 1.7e-45 186.0 120 74.2
Actinidia11444 Actinidia chinensis HOM05D005056 ORTHO05D006487 3.7e-45 184.9 110 80.9
FAN24G1973 Fragaria x ananassa HOM05D004197 ORTHO05D004975 4.8e-45 184.5 110 80.0
FvH4_2g13530 Fragaria vesca HOM05D004197 ORTHO05D004975 1.1e-44 183.3 112 79.5
SGA_v2.0_scaffold49G18240 Striga asiatica HOM05D004197 ORTHO05D004975 1.4e-44 183.0 110 81.8
QL04p093649 Quercus lobata HOM05D004197 ORTHO05D004975 4.1e-44 181.4 111 78.4
CDE09G0571 Ceratophyllum demersum HOM05D004197 ORTHO05D004975 2.0e-43 179.1 110 76.4
TAR493G0004 Trochodendron aralioides HOM05D004197 ORTHO05D004975 1.1e-41 173.3 107 80.4
HanXRQChr09g0264591 Helianthus annuus HOM05D004197 ORTHO05D004975 1.4e-41 172.9 94 88.3
Lj3g0000340 Lotus japonicus HOM05D004197 ORTHO05D004975 1.4e-39 166.4 122 68.9
MBI11_g23942_MAGBIO Magnolia biondii HOM05D004197 ORTHO05D004975 1.5e-38 162.9 95 83.2
Gorai.004G083000 Gossypium raimondii HOM05D004197 ORTHO05D004975 4.4e-38 161.4 95 82.1
Mapoly0027s0066 Marchantia polymorpha HOM05D004197 ORTHO05D004975 4.4e-38 161.4 120 65.8
AUR62002389 Chenopodium quinoa HOM05D004197 ORTHO05D004975 9.7e-38 160.2 213 44.6
Atru.chr12.1273 Acer truncatum HOM05D004197 ORTHO05D004975 3.7e-37 158.3 93 80.6
SEGI_18755 Sequoiadendron giganteum HOM05D004197 ORTHO05D004975 4.8e-37 157.9 120 63.3
Gohir.D08G078000 Gossypium hirsutum HOM05D004197 ORTHO05D004975 1.4e-36 156.4 93 82.8
Atru.chr12.1301 Acer truncatum HOM05D004197 ORTHO05D004975 1.8e-36 156.0 91 81.3
Gohir.D10G075200 Gossypium hirsutum HOM05D004197 ORTHO05D004975 3.1e-36 155.2 91 83.5
arahy.Tifrunner.gnm1.ann1.XY21PC Arachis hypogaea HOM05D004197 ORTHO05D004975 7.0e-36 154.1 131 61.1
Gohir.D02G135200 Gossypium hirsutum HOM05D004197 ORTHO05D004975 2.0e-35 152.5 91 82.4
C04p24770 Brassica napus HOM05D004197 ORTHO05D004975 3.5e-35 151.8 110 71.8
BolC4t23981H Brassica oleracea HOM05D004197 ORTHO05D004975 3.5e-35 151.8 110 71.8
Gorai.005G151300 Gossypium raimondii HOM05D004197 ORTHO05D004975 5.9e-35 151.0 91 81.3
Gorai.011G081000 Gossypium raimondii HOM05D004197 ORTHO05D004975 1.0e-34 150.2 91 82.4
Peaxi162Scf00474g00723 Petunia axillaris HOM05D004197 ORTHO05D004975 1.0e-34 150.2 120 65.8
Pp3c1_20100 Physcomitrium patens HOM05D004197 ORTHO05D004975 1.3e-34 149.8 120 61.7
SHI24203 Sapria himalayana HOM05D004197 ORTHO05D004975 2.2e-34 149.1 133 57.1
BcaC02g10824 Brassica carinata HOM05D004197 ORTHO05D004975 2.9e-34 148.7 110 70.9
DCAR_029674 Daucus carota HOM05D004197 ORTHO05D004975 5.0e-34 147.9 91 78.0
SalBow2G3321 Salvia bowleyana HOM05D004197 ORTHO05D004975 5.0e-34 147.9 90 80.0
Rhsim02G0084000 Rhododendron simsii HOM05D004197 ORTHO05D004975 8.5e-34 147.1 85 83.5
DCAR_009572 Daucus carota HOM05D004197 ORTHO05D004975 2.5e-33 145.6 91 76.9
Zm00001eb007240 Zea mays HOM05D004197 ORTHO05D004975 2.5e-33 145.6 91 78.0
Sabra13G0105500 Salix brachista HOM05D004197 ORTHO05D004975 6.1e-32 141.0 169 47.9
arahy.Tifrunner.gnm1.ann1.60591L Arachis hypogaea HOM05D004197 ORTHO05D004975 1.1e-30 136.7 136 58.1
CARHR099320 Cardamine hirsuta HOM05D004197 ORTHO05D004975 2.6e-30 135.6 83 78.3
unitig_736.g22525 Utricularia gibba HOM05D000398 ORTHO05D000551 2.6e-30 135.6 86 70.9
Gohir.D08G220700 Gossypium hirsutum HOM05D004197 ORTHO05D004975 6.3e-29 131.0 77 84.4
Lsat_1_v5_gn_6_23540 Lactuca sativa HOM05D004197 ORTHO05D004975 1.8e-28 129.4 95 67.4
TPR.G31074 Trifolium pratense HOM05D004197 ORTHO05D006502 1.6e-27 126.3 93 66.7
SMO347G0376 Selaginella moellendorffii HOM05D004197 ORTHO05D004975 1.1e-25 120.2 119 47.1
Gorai.004G076200 Gossypium raimondii HOM05D004197 ORTHO05D004975 4.2e-25 118.2 120 55.8
Hma1.2p1_0150F.1_g066800 Hydrangea macrophylla HOM05D004197 ORTHO05D004975 6.7e-23 110.9 62 83.9
vmacro16589 Vaccinium macrocarpon HOM05D004197 ORTHO05D004975 8.8e-23 110.5 62 83.9
COL.COLO4_08144 Corchorus olitorius HOM05D004197 ORTHO05D004975 4.4e-22 108.2 62 80.6
Lsat_1_v5_gn_2_131080 Lactuca sativa HOM05D004197 ORTHO05D004975 2.2e-21 105.9 84 67.9
arahy.Tifrunner.gnm1.ann1.GGUP18 Arachis hypogaea HOM05D004197 ORTHO05D004975 6.3e-21 104.4 62 79.0
Glyma.07G044001 Glycine max HOM05D004197 ORTHO05D004975 1.4e-20 103.2 89 62.9
Gohir.D04G172540 Gossypium hirsutum HOM05D004197 ORTHO05D004975 1.0e-18 97.1 62 77.4
Gorai.012G161800 Gossypium raimondii HOM05D004197 ORTHO05D004975 5.0e-18 94.7 62 75.8
Cre06.g270650 Chlamydomonas reinhardtii HOM05D004197 ORTHO05D004975 6.5e-18 94.4 110 42.7
MCO09G643 Micromonas commoda HOM05D004197 ORTHO05D004975 2.1e-16 89.4 115 40.9
Gorai.004G234500 Gossypium raimondii HOM05D004197 ORTHO05D004975 8.0e-16 87.4 57 77.2
arahy.Tifrunner.gnm1.ann1.HJ8Q1I Arachis hypogaea HOM05D004197 ORTHO05D004975 2.3e-15 85.9 57 70.2
Actinidia27110 Actinidia chinensis HOM05D004197 ORTHO05D004975 5.5e-09 64.7 44 70.5
Thecc.10G088100 Theobroma cacao HOM05D004197 ORTHO05D004975 6.1e-08 61.2 35 80.0


User provided reference genes

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