Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc03_g13850 Coffea canephora HOM05D006363 ORTHO05D007920 8.7e-111 403.7 208 100.0
Oeu062762.2 Olea europaea HOM05D006363 ORTHO05D007920 3.5e-75 285.4 200 74.5
Rhsim09G0197500 Rhododendron simsii HOM05D006363 ORTHO05D007920 3.5e-75 285.4 195 75.9
vmacro09843 Vaccinium macrocarpon HOM05D006363 ORTHO05D007920 4.5e-75 285.0 195 75.9
Dinv28459 Davidia involucrata HOM05D006363 ORTHO05D007920 7.7e-75 284.3 203 73.4
Nitab4.5_0001508g0030 Nicotiana tabacum HOM05D006363 ORTHO05D007920 7.7e-75 284.3 200 74.5
Nitab4.5_0000716g0210 Nicotiana tabacum HOM05D006363 ORTHO05D007920 3.2e-73 278.9 203 75.4
Peaxi162Scf00915g00018 Petunia axillaris HOM05D006363 ORTHO05D007920 4.2e-73 278.5 200 71.0
CSS0002932 Camellia sinensis var. sinensis HOM05D006363 ORTHO05D007920 9.4e-73 277.3 197 74.1
Migut.F01133 Erythranthe guttata HOM05D006363 ORTHO05D007920 6.1e-72 274.6 194 72.2
CSS0028509 Camellia sinensis var. sinensis HOM05D006363 ORTHO05D007920 1.8e-71 273.1 198 73.7
TWI39G0139 Tripterygium wilfordii HOM05D006363 ORTHO05D007920 2.3e-71 272.7 202 69.3
MSTRG.8448 Avicennia marina HOM05D006363 ORTHO05D007920 5.2e-71 271.6 203 70.4
PGSC0003DMG400014325 Solanum tuberosum HOM05D006363 ORTHO05D007920 6.8e-71 271.2 200 70.5
TPR.G14326 Trifolium pratense HOM05D006363 ORTHO05D007920 6.8e-71 271.2 196 69.9
QL09p014582 Quercus lobata HOM05D006363 ORTHO05D007920 1.2e-70 270.4 203 68.5
Phvul.007G068100 Phaseolus vulgaris HOM05D006363 ORTHO05D007920 1.5e-70 270.0 194 70.1
Solyc03g025990.1 Solanum lycopersicum HOM05D006363 ORTHO05D007920 1.5e-70 270.0 204 70.6
Sopen03g004810 Solanum pennellii HOM05D006363 ORTHO05D007920 1.5e-70 270.0 204 70.6
EL10Ac3g05667 Beta vulgaris HOM05D006363 ORTHO05D007920 2.6e-70 269.2 194 69.6
Thecc.03G174500 Theobroma cacao HOM05D006363 ORTHO05D007920 2.6e-70 269.2 198 70.2
Duzib205G1779 Durio zibethinus HOM05D006363 ORTHO05D007920 4.4e-70 268.5 196 71.4
AUR62016007 Chenopodium quinoa HOM05D006363 ORTHO05D007920 5.7e-70 268.1 193 71.0
VMungo0720G1872 Vigna mungo HOM05D006363 ORTHO05D007920 7.5e-70 267.7 196 68.4
Nn6g34197 Nelumbo nucifera HOM05D006363 ORTHO05D007920 1.3e-69 266.9 200 70.5
CANSAT21G0627 Cannabis sativa HOM05D006363 ORTHO05D007920 1.7e-69 266.5 202 68.8
Gohir.A12G258900 Gossypium hirsutum HOM05D006363 ORTHO05D007920 1.7e-69 266.5 195 71.3
Ciclev10007013m.g Citrus clementina HOM05D006363 ORTHO05D007920 2.2e-69 266.2 197 71.1
Gohir.D12G260100 Gossypium hirsutum HOM05D006363 ORTHO05D007920 2.2e-69 266.2 195 70.8
AUR62021214 Chenopodium quinoa HOM05D006363 ORTHO05D007920 2.8e-69 265.8 203 67.5
COL.COLO4_14288 Corchorus olitorius HOM05D006363 ORTHO05D007920 3.7e-69 265.4 195 70.8
Gorai.008G278600 Gossypium raimondii HOM05D006363 ORTHO05D007920 3.7e-69 265.4 195 70.8
Medtr1g100753 Medicago truncatula HOM05D006363 ORTHO05D007920 3.7e-69 265.4 196 67.3
Haze_13734 Corylus avellana HOM05D006363 ORTHO05D007920 4.8e-69 265.0 197 69.0
Lsat_1_v5_gn_2_133820 Lactuca sativa HOM05D006363 ORTHO05D007920 4.8e-69 265.0 196 71.4
Lj8C25T12 Lonicera japonica HOM05D006363 ORTHO05D007920 4.8e-69 265.0 195 68.7
PGR042G3170 Punica granatum HOM05D006363 ORTHO05D007920 8.3e-69 264.2 200 68.0
CANSAT21G2254 Cannabis sativa HOM05D006363 ORTHO05D007920 1.1e-68 263.8 202 67.3
FvH4_7g29240 Fragaria vesca HOM05D006363 ORTHO05D007920 1.1e-68 263.8 196 69.9
FAN06G3284 Fragaria x ananassa HOM05D006363 ORTHO05D007920 1.1e-68 263.8 196 69.9
FAN06G3928 Fragaria x ananassa HOM05D006363 ORTHO05D007920 1.1e-68 263.8 196 69.9
Cfa008303 Carpinus fangiana HOM05D006363 ORTHO05D007920 1.4e-68 263.5 197 68.0
Glyma.10G237500 Glycine max HOM05D006363 ORTHO05D007920 1.4e-68 263.5 197 68.0
Glyma.20G157100 Glycine max HOM05D006363 ORTHO05D007920 1.8e-68 263.1 196 67.9
Psat6g200600 Pisum sativum HOM05D006363 ORTHO05D007920 2.4e-68 262.7 196 67.9
Prupe.2G292400 Prunus persica HOM05D006363 ORTHO05D007920 2.4e-68 262.7 203 68.5
FAN10G0438 Fragaria x ananassa HOM05D006363 ORTHO05D007920 5.4e-68 261.5 196 68.9
Manes.07G111200 Manihot esculenta HOM05D006363 ORTHO05D007920 9.1e-68 260.8 196 69.9
Sabra15G0151200 Salix brachista HOM05D006363 ORTHO05D007920 9.1e-68 260.8 204 66.7
Atru.chr1.482 Acer truncatum HOM05D006363 ORTHO05D007920 1.2e-67 260.4 198 70.2
RcHm_v2.0_Chr1g0376991 Rosa chinensis HOM05D006363 ORTHO05D007920 2.0e-67 259.6 201 67.2
MD01G1199000 Malus domestica HOM05D006363 ORTHO05D007920 2.7e-67 259.2 197 68.5
unitig_60.g25545 Utricularia gibba HOM05D006363 ORTHO05D007920 2.7e-67 259.2 191 69.6
HanXRQChr14g0462221 Helianthus annuus HOM05D006363 ORTHO05D007920 5.9e-67 258.1 204 68.1
FAN03G1027 Fragaria x ananassa HOM05D006363 ORTHO05D007920 7.7e-67 257.7 196 68.4
MD07G1266800 Malus domestica HOM05D006363 ORTHO05D007920 7.7e-67 257.7 196 69.9
AL8G26570 Arabidopsis lyrata HOM05D006363 ORTHO05D007920 2.3e-66 256.1 201 67.2
Ca_10782_v3 Cicer arietinum L. HOM05D006363 ORTHO05D007920 2.3e-66 256.1 197 66.0
LjContig00238g0019616 Lotus japonicus HOM05D006363 ORTHO05D007920 2.3e-66 256.1 196 66.8
Potri.015G140600 Populus trichocarpa HOM05D006363 ORTHO05D007920 2.3e-66 256.1 199 66.3
CiPaw.03G104700 Carya illinoinensis HOM05D006363 ORTHO05D007920 1.1e-65 253.8 196 66.3
Thhalv10015742m.g Eutrema salsugineum HOM05D006363 ORTHO05D007920 1.1e-65 253.8 197 68.5
Ah.13g075440 Amaranthus hybridus HOM05D006363 ORTHO05D007920 1.5e-65 253.4 193 69.9
THA.LOC104811988 Tarenaya hassleriana HOM05D006363 ORTHO05D007920 1.5e-65 253.4 196 67.3
BcaC01g06171 Brassica carinata HOM05D006363 ORTHO05D007920 3.3e-65 252.3 197 67.5
BolC3t14244H Brassica oleracea HOM05D006363 ORTHO05D007920 3.3e-65 252.3 197 67.5
ECA238G0548 Erigeron canadensis HOM05D006363 ORTHO05D007920 3.3e-65 252.3 200 69.0
Sed0019375 Sechium edule HOM05D006363 ORTHO05D007920 4.2e-65 251.9 200 66.0
Cpa.g.sc107.33 Carica papaya HOM05D006363 ORTHO05D007920 5.5e-65 251.5 197 65.5
BraA03t10870Z Brassica rapa HOM05D006363 ORTHO05D007920 7.2e-65 251.1 197 67.0
DCAR_018188 Daucus carota HOM05D006363 ORTHO05D007920 9.5e-65 250.8 200 63.5
Eucgr.A02801 Eucalyptus grandis HOM05D006363 ORTHO05D007920 9.5e-65 250.8 203 64.0
GSVIVG01010552001 Vitis vinifera HOM05D006363 ORTHO05D007920 2.8e-64 249.2 199 66.3
C03p18470 Brassica napus HOM05D006363 ORTHO05D007920 3.6e-64 248.8 197 66.5
MELO3C006895.2 Cucumis melo HOM05D006363 ORTHO05D007920 3.6e-64 248.8 203 64.5
Aqoxy7G00395 Aquilegia oxysepala HOM05D006363 ORTHO05D007920 4.7e-64 248.4 201 67.2
FAN03G1282 Fragaria x ananassa HOM05D006363 ORTHO05D007920 4.7e-64 248.4 196 67.3
CsaV3_3G016980 Cucumis sativus L. HOM05D006363 ORTHO05D007920 6.1e-64 248.1 204 64.2
Carub.0008s1228 Capsella rubella HOM05D006363 ORTHO05D007920 1.4e-63 246.9 198 67.2
BcaB01g04190 Brassica carinata HOM05D006363 ORTHO05D007920 1.8e-63 246.5 197 66.0
CARHR265110 Cardamine hirsuta HOM05D006363 ORTHO05D007920 2.3e-63 246.1 198 66.7
CAN.G947.11 Capsicum annuum HOM05D006363 ORTHO05D007920 3.0e-63 245.7 193 68.9
AT5G52190 Arabidopsis thaliana HOM05D006363 ORTHO05D007920 4.0e-63 245.4 201 64.7
Aa31LG3G8570 Aethionema arabicum HOM05D006363 ORTHO05D007920 5.2e-63 245.0 196 65.8
Lalb_Chr02g0140961 Lupinus albus HOM05D006363 ORTHO05D007920 1.5e-62 243.4 193 64.2
PSO782G5704 Papaver somniferum HOM05D006363 ORTHO05D007920 2.6e-62 242.7 215 61.4
MBI04_g04731_MAGBIO Magnolia biondii HOM05D006363 ORTHO05D007920 3.4e-62 242.3 208 64.9
Sp6g14440 Schrenkiella parvula HOM05D006363 ORTHO05D007920 4.4e-62 241.9 199 64.8
PSO478G1739 Papaver somniferum HOM05D006363 ORTHO05D007920 1.7e-61 240.0 214 61.2
TAR375G0304 Trochodendron aralioides HOM05D006363 ORTHO05D007920 2.8e-61 239.2 185 68.6
Os04g0568600 Oryza sativa ssp. japonica HOM05D006363 ORTHO05D007920 6.1e-56 221.5 193 64.2
Zm00001eb428810 Zea mays HOM05D006363 ORTHO05D007920 1.8e-55 219.9 201 60.7
CDE04G1845 Ceratophyllum demersum HOM05D006363 ORTHO05D007920 2.6e-54 216.1 187 63.1
HPP92_021110 Vanilla planifolia HOM05D006363 ORTHO05D007920 1.9e-52 209.9 175 64.6
SalBow2G2214 Salvia bowleyana HOM05D006363 ORTHO05D007920 6.6e-50 201.4 159 69.8
ATR0757G111 Amborella trichopoda HOM05D006363 ORTHO05D007920 1.1e-49 200.7 203 53.2
A03p15800 Brassica napus HOM05D006363 ORTHO05D007920 1.1e-49 200.7 143 74.1
SEGI_31787 Sequoiadendron giganteum HOM05D006363 ORTHO05D007920 4.4e-46 188.7 202 51.5
FAN01G1422 Fragaria x ananassa HOM05D006363 ORTHO05D007920 5.8e-46 188.3 196 54.6
Sc25g0000440 Simmondsia chinensis HOM05D006363 ORTHO05D007920 1.4e-44 183.7 150 66.0
Pp3c6_24270 Physcomitrium patens HOM05D006363 ORTHO05D007920 1.9e-44 183.3 209 48.8
SMO367G0077 Selaginella moellendorffii HOM05D006363 ORTHO05D007920 8.1e-40 167.9 169 56.8
A08p37210 Brassica napus HOM05D006363 ORTHO05D007920 2.1e-32 143.3 123 59.3
BcaC01g06168 Brassica carinata HOM05D006363 ORTHO05D007920 2.1e-24 116.7 92 64.1
BcaC06g36545 Brassica carinata HOM05D006363 ORTHO05D007920 4.7e-24 115.5 87 67.8
Mapoly0047s0087 Marchantia polymorpha HOM05D006363 ORTHO05D007920 3.4e-22 109.4 171 43.9
Pp3c17_12800 Physcomitrium patens HOM05D006363 ORTHO05D007920 2.5e-17 93.2 322 28.3
BolC5t32613H Brassica oleracea HOM05D006363 ORTHO05D007920 2.1e-16 90.1 94 51.1
C05p38730 Brassica napus HOM05D006363 ORTHO05D007920 8.1e-16 88.2 94 50.0
TPR.G33086 Trifolium pratense HOM05D006363 ORTHO05D007920 8.1e-16 88.2 58 70.7
Actinidia03116 Actinidia chinensis HOM05D006363 ORTHO05D007920 1.4e-15 87.4 110 52.7
TAR633G0106 Trochodendron aralioides HOM05D006363 ORTHO05D007920 1.8e-15 87.0 62 67.7
TAR633G1276 Trochodendron aralioides HOM05D006363 ORTHO05D007920 3.4e-14 82.8 61 67.2
TAR291G0005 Trochodendron aralioides HOM05D006363 ORTHO05D007920 5.8e-14 82.0 61 67.2
TAR375G0495 Trochodendron aralioides HOM05D006363 ORTHO05D007920 5.8e-14 82.0 61 67.2
TAR624G1193 Trochodendron aralioides HOM05D006363 ORTHO05D007920 5.8e-14 82.0 61 67.2
TAR614G0003 Trochodendron aralioides HOM05D006363 ORTHO05D007920 1.3e-13 80.9 61 67.2
TAR383G0849 Trochodendron aralioides HOM05D003653 ORTHO05D004249 3.8e-13 79.3 61 65.6
TAR629G0450 Trochodendron aralioides HOM05D006363 ORTHO05D007920 4.9e-13 79.0 61 65.6
BcaC01g06167 Brassica carinata HOM05D006363 ORTHO05D007920 9.3e-12 74.7 46 73.9
BcaC05g27871 Brassica carinata HOM05D006363 ORTHO05D007920 1.2e-11 74.3 104 50.0


User provided reference genes

Program Settings