Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc03_g13170 Coffea canephora HOM05D006262 ORTHO05D007266 8.9e-249 863.2 461 100.0
CSS0049911 Camellia sinensis var. sinensis HOM05D006262 ORTHO05D007266 1.0e-103 381.3 467 51.4
Solyc09g098530.4 Solanum lycopersicum HOM05D006262 ORTHO05D007266 6.7e-103 378.6 469 48.8
PGSC0003DMG400021613 Solanum tuberosum HOM05D006262 ORTHO05D007266 1.1e-102 377.9 467 48.6
Sopen09g036450 Solanum pennellii HOM05D006262 ORTHO05D007266 7.4e-102 375.2 452 49.6
Dinv22693 Davidia involucrata HOM05D006262 ORTHO05D007266 2.4e-100 370.2 422 50.7
Hma1.2p1_0597F.1_g186430 Hydrangea macrophylla HOM05D006262 ORTHO05D007266 2.7e-96 356.7 405 50.4
Cfa015775 Carpinus fangiana HOM05D006262 ORTHO05D007266 3.0e-95 353.2 393 52.4
TAR362G0090 Trochodendron aralioides HOM05D006262 ORTHO05D007266 3.9e-95 352.8 449 47.9
Atru.chr3.1601 Acer truncatum HOM05D006262 ORTHO05D007266 4.3e-94 349.4 440 48.2
Atru.chr3.1609 Acer truncatum HOM05D006262 ORTHO05D007266 4.3e-94 349.4 440 48.2
DCAR_023918 Daucus carota HOM05D006262 ORTHO05D007266 9.6e-94 348.2 397 50.9
Ciclev10020134m.g Citrus clementina HOM05D006262 ORTHO05D007266 6.3e-93 345.5 370 54.3
vmacro00601 Vaccinium macrocarpon HOM05D006262 ORTHO05D007266 1.8e-92 344.0 428 48.1
Rhsim09G0030700 Rhododendron simsii HOM05D006262 ORTHO05D007266 4.1e-92 342.8 390 51.5
TWI63G1082 Tripterygium wilfordii HOM05D006262 ORTHO05D007266 2.0e-91 340.5 399 50.6
Manes.04G048800 Manihot esculenta HOM05D006262 ORTHO05D007266 7.6e-91 338.6 387 50.6
MSTRG.24585 Avicennia marina HOM05D006262 ORTHO05D007266 8.5e-90 335.1 365 52.1
HanXRQChr15g0494811 Helianthus annuus HOM05D006262 ORTHO05D007266 2.1e-88 330.5 408 49.3
Potri.007G124600 Populus trichocarpa HOM05D006262 ORTHO05D007266 2.1e-88 330.5 400 49.0
Thecc.05G002700 Theobroma cacao HOM05D006262 ORTHO05D007266 2.1e-88 330.5 397 49.9
ECA238G4140 Erigeron canadensis HOM05D000005 ORTHO05D000012 3.6e-88 329.7 405 48.6
FvH4_4g11340 Fragaria vesca HOM05D006262 ORTHO05D007266 1.3e-87 327.8 391 48.8
CANSAT78G0581 Cannabis sativa HOM05D006262 ORTHO05D007266 2.3e-87 327.0 368 52.4
Migut.N03113 Erythranthe guttata HOM05D006262 ORTHO05D007266 1.1e-86 324.7 406 47.8
SalBow6G1208 Salvia bowleyana HOM05D006262 ORTHO05D007266 1.9e-86 323.9 381 50.4
QL10p047365 Quercus lobata HOM05D006262 ORTHO05D007266 5.7e-86 322.4 429 48.5
RcHm_v2.0_Chr4g0407651 Rosa chinensis HOM05D006262 ORTHO05D007266 7.4e-86 322.0 370 51.1
PGR142G3389 Punica granatum HOM05D006262 ORTHO05D007266 2.8e-85 320.1 361 51.2
COL.COLO4_14416 Corchorus olitorius HOM05D006262 ORTHO05D007266 3.7e-85 319.7 447 46.3
CsaV3_4G003530 Cucumis sativus L. HOM05D006262 ORTHO05D007266 6.9e-84 315.5 412 46.8
Prupe.1G187900 Prunus persica HOM05D006262 ORTHO05D007266 1.2e-83 314.7 364 50.5
Sed0004128 Sechium edule HOM05D006262 ORTHO05D007266 4.5e-83 312.8 469 41.8
Aqoxy2G04115 Aquilegia oxysepala HOM05D006262 ORTHO05D007266 1.3e-82 311.2 401 46.6
Lsat_1_v5_gn_2_51881 Lactuca sativa HOM05D006262 ORTHO05D007266 2.2e-82 310.5 397 46.9
MELO3C017699.2 Cucumis melo HOM05D006262 ORTHO05D007266 5.0e-82 309.3 413 46.0
Duzib093G0344 Durio zibethinus HOM05D006262 ORTHO05D007266 6.5e-82 308.9 395 47.6
Carub.0004s2570 Capsella rubella HOM05D006262 ORTHO05D007266 2.5e-81 307.0 391 47.8
AL4G41890 Arabidopsis lyrata HOM05D006262 ORTHO05D007266 3.2e-81 306.6 386 47.4
BcaC01g05249 Brassica carinata HOM05D006262 ORTHO05D007266 5.5e-81 305.8 385 49.6
A03p24130 Brassica napus HOM05D006262 ORTHO05D007266 5.5e-81 305.8 385 48.8
ClCG07G015820 Citrullus lanatus HOM05D006262 ORTHO05D007266 5.5e-81 305.8 414 45.2
Sc13g0007690 Simmondsia chinensis HOM05D006262 ORTHO05D007266 5.5e-81 305.8 381 49.1
BraA03t11623Z Brassica rapa HOM05D006262 ORTHO05D007266 7.2e-81 305.4 385 48.8
MD04G1038000 Malus domestica HOM05D006262 ORTHO05D007266 9.4e-81 305.1 363 49.3
C03p28720 Brassica napus HOM05D006262 ORTHO05D007266 1.2e-80 304.7 385 49.6
CARHR138310 Cardamine hirsuta HOM05D006262 ORTHO05D007266 1.2e-80 304.7 386 47.7
AT2G43235 Arabidopsis thaliana HOM05D006262 ORTHO05D007266 2.1e-80 303.9 386 47.4
Sabra07G0100700 Salix brachista HOM05D006262 ORTHO05D002297 2.1e-80 303.9 394 47.5
MBI08_g33651_MAGBIO Magnolia biondii HOM05D006262 ORTHO05D007266 2.7e-80 303.5 400 46.2
PSO675G4698 Papaver somniferum HOM05D006262 ORTHO05D007266 2.7e-80 303.5 395 45.1
BolC3t15234H Brassica oleracea HOM05D006262 ORTHO05D007266 3.6e-80 303.1 385 49.4
Lj3A232G38 Lonicera japonica HOM05D006262 ORTHO05D007266 6.1e-80 302.4 399 45.6
Sp4g25360 Schrenkiella parvula HOM05D006262 ORTHO05D007266 1.4e-79 301.2 386 48.2
Thhalv10001453m.g Eutrema salsugineum HOM05D006262 ORTHO05D007266 1.8e-79 300.8 389 47.6
BcaB01g03403 Brassica carinata HOM05D006262 ORTHO05D007266 2.3e-79 300.4 391 47.6
Eucgr.A00253 Eucalyptus grandis HOM05D006262 ORTHO05D007266 5.1e-79 299.3 330 51.5
Oeu029569.3 Olea europaea HOM05D006262 ORTHO05D007266 1.1e-78 298.1 457 41.8
EL10Ac3g06302 Beta vulgaris HOM05D006262 ORTHO05D007266 1.5e-78 297.7 395 44.8
Nn1g09825 Nelumbo nucifera HOM05D006262 ORTHO05D007266 2.6e-78 297.0 378 46.3
Ah.07g204100 Amaranthus hybridus HOM05D006262 ORTHO05D007266 9.7e-78 295.0 382 46.6
PSO017G4626 Papaver somniferum HOM05D006262 ORTHO05D007266 1.7e-77 294.3 393 45.5
Gohir.A04G096300 Gossypium hirsutum HOM05D006262 ORTHO05D007266 3.1e-76 290.0 388 46.9
Gohir.D04G136100 Gossypium hirsutum HOM05D006262 ORTHO05D007266 5.3e-76 289.3 388 46.6
ATR0743G268 Amborella trichopoda HOM05D006262 ORTHO05D007266 6.9e-76 288.9 392 44.1
Glyma.20G245900 Glycine max HOM05D006262 ORTHO05D007266 1.2e-75 288.1 378 46.8
Lalb_Chr02g0144321 Lupinus albus HOM05D006262 ORTHO05D007266 2.0e-75 287.3 402 44.0
Phvul.007G004000 Phaseolus vulgaris HOM05D006262 ORTHO05D007266 5.9e-75 285.8 359 47.9
Aa31LG1G25040 Aethionema arabicum HOM05D006262 ORTHO05D007266 1.3e-74 284.6 405 45.2
Gorai.012G119900 Gossypium raimondii HOM05D006262 ORTHO05D007266 1.7e-74 284.3 388 46.4
Hund22599 Selenicereus undatus HOM05D006262 ORTHO05D007266 2.9e-74 283.5 396 46.0
Lj5g0018354 Lotus japonicus HOM05D006262 ORTHO05D007266 1.4e-73 281.2 382 43.2
GSVIVG01013579001 Vitis vinifera HOM05D006262 ORTHO05D007266 1.4e-73 281.2 238 61.3
VMungo0720G2273 Vigna mungo HOM05D006262 ORTHO05D007266 1.9e-73 280.8 382 45.5
Ca_29592_v3 Cicer arietinum L. HOM05D006262 ORTHO05D007266 9.4e-73 278.5 401 43.1
unitig_27.g25149 Utricularia gibba HOM05D006262 ORTHO05D007266 2.1e-72 277.3 381 45.1
arahy.Tifrunner.gnm1.ann1.6Y9ITK Arachis hypogaea HOM05D006262 ORTHO05D007266 3.0e-71 273.5 354 46.0
arahy.Tifrunner.gnm1.ann1.BL35NN Arachis hypogaea HOM05D006262 ORTHO05D007266 5.2e-71 272.7 353 46.7
CDE09G0849 Ceratophyllum demersum HOM05D006262 ORTHO05D007266 1.7e-69 267.7 308 51.3
Medtr1g116540 Medicago truncatula HOM05D006262 ORTHO05D007266 5.3e-68 262.7 397 41.6
Haze_00720 Corylus avellana HOM05D006262 ORTHO05D007266 7.0e-68 262.3 496 37.9
TPR.G10421 Trifolium pratense HOM05D006262 ORTHO05D007266 1.0e-66 258.5 392 42.1
Os05g0299200 Oryza sativa ssp. japonica HOM05D006262 ORTHO05D007266 5.2e-63 246.1 368 41.6
HPP92_024424 Vanilla planifolia HOM05D006262 ORTHO05D007266 2.2e-61 240.7 364 41.2
Zm00001eb350760 Zea mays HOM05D006262 ORTHO05D007266 2.8e-61 240.4 371 41.2
Peaxi162Scf00286g00119 Petunia axillaris HOM05D006262 ORTHO05D007266 5.9e-59 232.6 184 65.8
Nitab4.5_0002908g0080 Nicotiana tabacum HOM05D006262 ORTHO05D007266 1.1e-57 228.4 172 65.7
AUR62030023 Chenopodium quinoa HOM05D006262 ORTHO05D007266 1.5e-57 228.0 386 40.7
Nitab4.5_0001049g0110 Nicotiana tabacum HOM05D006262 ORTHO05D007266 1.5e-57 228.0 161 68.9
SEGI_17174 Sequoiadendron giganteum HOM05D006262 ORTHO05D007266 5.5e-57 226.1 395 38.5
AUR62002605 Chenopodium quinoa HOM05D006262 ORTHO05D007266 7.2e-57 225.7 382 40.1
Psat6g241480 Pisum sativum HOM05D006262 ORTHO05D007266 5.4e-52 209.5 198 54.5
Ca_11400_v3 Cicer arietinum L. HOM05D006262 ORTHO05D007266 1.5e-49 201.4 401 37.7
Ca_11403_v3 Cicer arietinum L. HOM05D006262 ORTHO05D007266 1.9e-49 201.1 394 38.1
AagrBONN_evm.TU.Sc2ySwM_344.5117 Anthoceros agrestis HOM05D006262 ORTHO05D007266 5.5e-49 199.5 368 38.3
Mapoly0004s0159 Marchantia polymorpha HOM05D006262 ORTHO05D007266 2.1e-48 197.6 351 37.9
SGA_v2.0_scaffold31G12573 Striga asiatica HOM05D006262 ORTHO05D007266 2.0e-46 191.0 361 34.6
CiPaw.01G102600 Carya illinoinensis HOM05D006262 ORTHO05D007266 7.5e-46 189.1 260 45.8
Hma1.2p1_0597F.1_g186420 Hydrangea macrophylla HOM05D006262 ORTHO05D007266 1.7e-42 177.9 140 65.7
SMO351G0235 Selaginella moellendorffii HOM05D006262 ORTHO05D007266 2.3e-42 177.6 280 41.4
Pp3c12_3930 Physcomitrium patens HOM05D006262 ORTHO05D007266 3.0e-39 167.2 389 35.2
Nitab4.5_0002908g0070 Nicotiana tabacum HOM05D006262 ORTHO05D007266 2.9e-37 160.6 229 44.1
Nitab4.5_0001049g0100 Nicotiana tabacum HOM05D006262 ORTHO05D007266 2.4e-36 157.5 222 44.6
Pp3c9_3680 Physcomitrium patens HOM05D006262 ORTHO05D007266 4.4e-30 136.7 398 28.4
Peaxi162Scf00286g10017 Petunia axillaris HOM05D006262 ORTHO05D007266 5.0e-26 123.2 268 37.3
MCO03G554 Micromonas commoda HOM05D006262 ORTHO05D007266 3.6e-24 117.1 287 32.8
Cpa.g.sc71.30 Carica papaya HOM05D006262 ORTHO05D007266 6.8e-23 112.8 81 71.6
Hma1.2p1_0597F.1_g186440 Hydrangea macrophylla HOM05D006262 ORTHO05D007266 6.8e-23 112.8 205 36.1
CAN.G688.4 Capsicum annuum HOM05D006262 ORTHO05D007266 7.8e-19 99.4 82 59.8
FAN17G0796 Fragaria x ananassa HOM05D006262 ORTHO05D007266 1.3e-18 98.6 73 64.4
Cpa.g.sc71.28 Carica papaya HOM05D006262 ORTHO05D007266 5.1e-18 96.7 204 32.8
QL09p046233 Quercus lobata HOM05D006262 ORTHO05D007266 8.1e-16 89.4 83 61.4
PRCOL_00005486 Prasinoderma coloniale HOM05D006262 ORTHO05D007266 1.8e-15 88.2 215 30.7
GSVIVG01020265001 Vitis vinifera HOM05D006262 ORTHO05D007266 1.3e-13 82.0 104 45.2
CAN.G51.2 Capsicum annuum HOM05D006262 ORTHO05D007266 1.7e-13 81.6 82 52.4
AagrBONN_evm.TU.Sc2ySwM_368.1862 Anthoceros agrestis HOM05D005935 ORTHO05D007012 2.7e-11 74.3 72 56.9
Cre01.g049900 Chlamydomonas reinhardtii HOM05D006262 ORTHO05D007266 3.9e-10 70.5 309 25.6
FvH4_c17g00080 Fragaria vesca HOM05D006262 ORTHO05D007266 1.1e-09 68.9 48 70.8
FAN07G2249 Fragaria x ananassa HOM05D006262 ORTHO05D007266 1.5e-09 68.6 45 73.3
MCO09G632 Micromonas commoda HOM05D006262 ORTHO05D007266 2.8e-08 64.3 219 24.7
Glyma.10G295900 Glycine max HOM05D006262 ORTHO05D007266 1.4e-07 62.0 110 41.8


User provided reference genes

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