Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc03_g13110 Coffea canephora HOM05D006659 ORTHO05D008372 2.9e-130 468.8 269 100.0
CSS0040017 Camellia sinensis var. sinensis HOM05D006659 ORTHO05D008372 2.9e-82 309.3 273 67.0
QL10p048762 Quercus lobata HOM05D006659 ORTHO05D008372 2.1e-80 303.1 273 63.0
CSS0046315 Camellia sinensis var. sinensis HOM05D006659 ORTHO05D008372 5.1e-79 298.5 273 66.3
CiPaw.01G100500 Carya illinoinensis HOM05D006659 ORTHO05D008372 8.2e-77 291.2 274 59.5
Medtr4g067150 Medicago truncatula HOM05D006659 ORTHO05D008372 6.9e-76 288.1 270 62.2
GSVIVG01010754001 Vitis vinifera HOM05D006659 ORTHO05D008372 3.4e-75 285.8 198 70.7
Duzib151G0383 Durio zibethinus HOM05D006659 ORTHO05D008372 7.6e-75 284.6 270 61.1
Manes.11G120400 Manihot esculenta HOM05D006659 ORTHO05D008372 7.6e-75 284.6 278 62.9
TPR.G34236 Trifolium pratense HOM05D006659 ORTHO05D008372 7.6e-75 284.6 269 60.2
Haze_01513 Corylus avellana HOM05D006659 ORTHO05D008372 1.0e-74 284.3 268 60.1
TAR362G1327 Trochodendron aralioides HOM05D006659 ORTHO05D008372 1.0e-74 284.3 273 66.7
Cpa.g.sc9.272 Carica papaya HOM05D006659 ORTHO05D008372 1.7e-74 283.5 197 73.6
Prupe.1G193000 Prunus persica HOM05D006659 ORTHO05D008372 1.7e-74 283.5 269 61.0
Oeu053837.1 Olea europaea HOM05D006659 ORTHO05D008372 3.8e-74 282.3 270 55.2
Dinv44193 Davidia involucrata HOM05D006659 ORTHO05D008372 6.5e-74 281.6 217 71.4
Thecc.04G179900 Theobroma cacao HOM05D006659 ORTHO05D008372 1.1e-73 280.8 196 70.4
MSTRG.24582 Avicennia marina HOM05D006659 ORTHO05D008372 3.2e-73 279.3 273 58.2
Lalb_Chr03g0026131 Lupinus albus HOM05D006659 ORTHO05D008372 5.5e-73 278.5 250 62.4
Gohir.A10G137100 Gossypium hirsutum HOM05D006659 ORTHO05D008372 9.3e-73 277.7 196 69.4
Gohir.D10G129500 Gossypium hirsutum HOM05D006659 ORTHO05D008372 9.3e-73 277.7 196 69.4
Gorai.011G142800 Gossypium raimondii HOM05D006659 ORTHO05D008372 9.3e-73 277.7 196 69.4
PGSC0003DMG400027013 Solanum tuberosum HOM05D006659 ORTHO05D008372 2.7e-72 276.2 274 63.5
Lalb_Chr01g0003161 Lupinus albus HOM05D006659 ORTHO05D008372 3.6e-72 275.8 275 60.7
Duzib212G0569 Durio zibethinus HOM05D006659 ORTHO05D008372 4.6e-72 275.4 275 60.7
Gohir.A09G211000 Gossypium hirsutum HOM05D006659 ORTHO05D008372 6.1e-72 275.0 195 69.7
Nitab4.5_0008969g0010 Nicotiana tabacum HOM05D006659 ORTHO05D008372 6.1e-72 275.0 231 68.0
Potri.007G128200 Populus trichocarpa HOM05D006659 ORTHO05D008372 7.9e-72 274.6 274 60.9
Gohir.D09G204400 Gossypium hirsutum HOM05D006659 ORTHO05D008372 3.0e-71 272.7 192 69.8
Gorai.006G228300 Gossypium raimondii HOM05D006659 ORTHO05D008372 5.1e-71 271.9 192 69.8
Potri.017G030100 Populus trichocarpa HOM05D006659 ORTHO05D008372 3.3e-70 269.2 197 69.0
Dinv22730 Davidia involucrata HOM05D006659 ORTHO05D008372 5.7e-70 268.5 248 64.5
TWI14G0225 Tripterygium wilfordii HOM05D006659 ORTHO05D008372 5.7e-70 268.5 271 63.5
TWI39G0181 Tripterygium wilfordii HOM05D006659 ORTHO05D008372 5.7e-70 268.5 271 63.5
Solyc06g073290.1 Solanum lycopersicum HOM05D006659 ORTHO05D008372 7.4e-70 268.1 280 62.5
MBI08_g14954_MAGBIO Magnolia biondii HOM05D006659 ORTHO05D008064 9.7e-70 267.7 246 62.2
Sopen06g029650 Solanum pennellii HOM05D006659 ORTHO05D008372 9.7e-70 267.7 281 63.0
MD04G1040300 Malus domestica HOM05D006659 ORTHO05D008372 1.3e-69 267.3 272 57.7
Rhsim09G0027800 Rhododendron simsii HOM05D006659 ORTHO05D008372 4.8e-69 265.4 241 56.4
Sabra17G0019600 Salix brachista HOM05D006659 ORTHO05D008372 4.8e-69 265.4 199 68.3
Sabra07G0104600 Salix brachista HOM05D006659 ORTHO05D008372 8.2e-69 264.6 240 65.0
arahy.Tifrunner.gnm1.ann1.AVW0M7 Arachis hypogaea HOM05D006659 ORTHO05D008372 1.8e-68 263.5 254 57.1
arahy.Tifrunner.gnm1.ann1.Q6M2DC Arachis hypogaea HOM05D006659 ORTHO05D008372 1.8e-68 263.5 273 55.7
Ca_20785_v3 Cicer arietinum L. HOM05D006659 ORTHO05D008372 1.8e-68 263.5 193 67.4
PGR083G0301 Punica granatum HOM05D006659 ORTHO05D008372 1.8e-68 263.5 191 66.5
VMungo1127G1494 Vigna mungo HOM05D006659 ORTHO05D008372 1.8e-68 263.5 239 61.1
Lj3g0013401 Lotus japonicus HOM05D006659 ORTHO05D008372 2.4e-68 263.1 283 57.6
ClCG08G004640 Citrullus lanatus HOM05D006659 ORTHO05D008372 4.1e-68 262.3 267 55.4
Phvul.011G054500 Phaseolus vulgaris HOM05D006659 ORTHO05D008372 4.1e-68 262.3 239 63.6
RhsimUnG0221100 Rhododendron simsii HOM05D006659 ORTHO05D008372 4.1e-68 262.3 241 56.0
COL.COLO4_07662 Corchorus olitorius HOM05D006659 ORTHO05D008372 6.9e-68 261.5 186 68.3
Ciclev10021505m.g Citrus clementina HOM05D006659 ORTHO05D008372 5.9e-67 258.5 200 68.0
Atru.chr3.1492 Acer truncatum HOM05D006659 ORTHO05D008372 1.3e-66 257.3 236 62.7
Aqoxy2G04093 Aquilegia oxysepala HOM05D006659 ORTHO05D008372 1.3e-66 257.3 226 64.2
CANSAT78G0008 Cannabis sativa HOM05D006659 ORTHO05D008372 2.2e-66 256.5 194 69.1
Glyma.12G052500 Glycine max HOM05D006659 ORTHO05D008372 2.9e-66 256.1 275 53.8
Psat7g214800 Pisum sativum HOM05D006659 ORTHO05D008372 2.9e-66 256.1 270 57.8
HanXRQChr01g0004971 Helianthus annuus HOM05D006659 ORTHO05D008372 5.0e-66 255.4 193 65.8
RcHm_v2.0_Chr4g0406801 Rosa chinensis HOM05D006659 ORTHO05D008372 5.0e-66 255.4 198 64.6
Lsat_1_v5_gn_1_120661 Lactuca sativa HOM05D006659 ORTHO05D008372 1.1e-65 254.2 270 57.8
THA.LOC104802307 Tarenaya hassleriana HOM05D006659 ORTHO05D008372 3.2e-65 252.7 251 55.0
THA.LOC104803695 Tarenaya hassleriana HOM05D006659 ORTHO05D008372 3.2e-65 252.7 253 58.9
unitig_578.g16263 Utricularia gibba HOM05D006659 ORTHO05D008372 7.2e-65 251.5 221 60.2
ATR0824G177 Amborella trichopoda HOM05D006659 ORTHO05D008372 9.4e-65 251.1 194 64.9
Migut.N03108 Erythranthe guttata HOM05D006659 ORTHO05D008372 9.4e-65 251.1 224 59.8
PSO675G8713 Papaver somniferum HOM05D006659 ORTHO05D008372 9.4e-65 251.1 245 55.9
Cfa015167 Carpinus fangiana HOM05D006659 ORTHO05D008372 7.9e-64 248.1 178 68.0
MELO3C011657.2 Cucumis melo HOM05D006659 ORTHO05D008372 1.0e-63 247.7 261 52.5
SalBow6G0037 Salvia bowleyana HOM05D006659 ORTHO05D008372 1.0e-63 247.7 229 63.3
Ah.07g201990 Amaranthus hybridus HOM05D006659 ORTHO05D008372 1.8e-63 246.9 198 63.1
Lj6C54T1 Lonicera japonica HOM05D006659 ORTHO05D008372 2.3e-63 246.5 191 66.0
Actinidia35977 Actinidia chinensis HOM05D006659 ORTHO05D008372 3.0e-63 246.1 251 59.0
CsaV3_6G003920 Cucumis sativus L. HOM05D006659 ORTHO05D008372 3.0e-63 246.1 271 52.0
PSO017G5731 Papaver somniferum HOM05D006659 ORTHO05D008372 5.1e-63 245.4 280 56.8
FvH4_4g10790 Fragaria vesca HOM05D006659 ORTHO05D008372 8.8e-63 244.6 230 60.0
FAN12G1956 Fragaria x ananassa HOM05D006659 ORTHO05D008372 8.8e-63 244.6 230 60.0
EL10Ac3g05931 Beta vulgaris HOM05D006659 ORTHO05D008372 2.0e-62 243.4 269 53.9
ECA248G3871 Erigeron canadensis HOM05D006659 ORTHO05D008372 5.7e-62 241.9 277 56.0
Sed0004224 Sechium edule HOM05D006659 ORTHO05D008372 5.7e-62 241.9 197 62.4
Manes.04G042918 Manihot esculenta HOM05D006659 ORTHO05D008372 1.3e-61 240.7 200 63.5
CAN.G65.172 Capsicum annuum HOM05D006659 ORTHO05D008372 1.7e-61 240.4 196 66.3
FAN07G0020 Fragaria x ananassa HOM05D006659 ORTHO05D008372 4.8e-61 238.8 230 58.3
Sed0027988 Sechium edule HOM05D006659 ORTHO05D008372 6.9e-60 235.0 254 53.9
BcaC07g40458 Brassica carinata HOM05D006659 ORTHO05D008372 9.1e-60 234.6 252 56.3
BcaB02g07470 Brassica carinata HOM05D006659 ORTHO05D008372 1.5e-59 233.8 271 54.2
A09p51640 Brassica napus HOM05D006659 ORTHO05D008372 2.6e-59 233.0 250 52.8
AUR62015391 Chenopodium quinoa HOM05D006283 ORTHO05D007727 3.4e-59 232.6 211 55.9
Os11g0267000 Oryza sativa ssp. japonica HOM05D006659 ORTHO05D008372 3.4e-59 232.6 193 58.5
Aa31LG10G13750 Aethionema arabicum HOM05D006659 ORTHO05D008372 1.7e-58 230.3 238 57.6
A07p24640 Brassica napus HOM05D006659 ORTHO05D008372 3.8e-58 229.2 252 54.0
BolC6t37777H Brassica oleracea HOM05D006659 ORTHO05D008372 8.5e-58 228.0 252 53.6
BraA07t30109Z Brassica rapa HOM05D006659 ORTHO05D008372 1.1e-57 227.6 253 54.2
BraA09t40604Z Brassica rapa HOM05D006659 ORTHO05D008372 1.4e-57 227.3 250 51.6
CARHR169790 Cardamine hirsuta HOM05D006659 ORTHO05D008372 1.9e-57 226.9 270 51.1
BcaC07g40279 Brassica carinata HOM05D006659 ORTHO05D008372 3.2e-57 226.1 250 51.6
C06p26120 Brassica napus HOM05D006659 ORTHO05D008372 3.2e-57 226.1 252 53.2
C08p34410 Brassica napus HOM05D006659 ORTHO05D008372 3.2e-57 226.1 250 51.6
BolC8t51042H Brassica oleracea HOM05D006659 ORTHO05D008372 3.2e-57 226.1 250 51.6
BcaC08g44982 Brassica carinata HOM05D006659 ORTHO05D008372 4.2e-57 225.7 252 52.8
Zm00001eb406810 Zea mays HOM05D006659 ORTHO05D008372 9.4e-57 224.6 192 58.3
Thhalv10006183m.g Eutrema salsugineum HOM05D006659 ORTHO05D008372 1.2e-56 224.2 254 53.5
Sp5g03740 Schrenkiella parvula HOM05D006659 ORTHO05D008372 6.1e-56 221.9 253 51.0
AT3G59400 Arabidopsis thaliana HOM05D006659 ORTHO05D008372 1.8e-55 220.3 251 53.8
AL5G41300 Arabidopsis lyrata HOM05D006659 ORTHO05D008372 3.9e-55 219.2 253 53.4
SGA_v2.0_scaffold31G12575 Striga asiatica HOM05D006659 ORTHO05D008372 1.5e-54 217.2 234 53.4
Carub.0005s2614 Capsella rubella HOM05D006659 ORTHO05D008372 4.4e-54 215.7 250 54.4
SEGI_36451 Sequoiadendron giganteum HOM05D006659 ORTHO05D008372 1.6e-51 207.2 154 62.3
Glyma.11G127800 Glycine max HOM05D006659 ORTHO05D008372 2.0e-51 206.8 228 53.1
Peaxi162Scf00413g00827 Petunia axillaris HOM05D006659 ORTHO05D008372 1.3e-50 204.1 276 56.2
AagrBONN_evm.TU.Sc2ySwM_228.5135 Anthoceros agrestis HOM05D006659 ORTHO05D008372 1.1e-44 184.5 155 56.8
Mapoly0173s0019 Marchantia polymorpha HOM05D006659 ORTHO05D008372 6.5e-42 175.3 147 55.1
VMungo1309G1939 Vigna mungo HOM05D006659 ORTHO05D008372 1.9e-41 173.7 253 45.5
Pp3c25_4400 Physcomitrium patens HOM05D006659 ORTHO05D008372 4.2e-41 172.6 147 56.5
Pp3c6_11210 Physcomitrium patens HOM05D006659 ORTHO05D008372 4.2e-41 172.6 147 56.5
SMO170G0079 Selaginella moellendorffii HOM05D006659 ORTHO05D008372 2.1e-40 170.2 199 46.7
CBR_g10809 Chara braunii HOM05D006659 ORTHO05D008372 4.0e-39 166.0 211 44.1
CDE04G1206 Ceratophyllum demersum HOM05D006659 ORTHO05D008372 2.8e-37 159.8 142 56.3
Cre05.g246800 Chlamydomonas reinhardtii HOM05D006659 ORTHO05D008372 5.9e-35 152.1 174 46.0
Oeu053835.1 Olea europaea HOM05D006659 ORTHO05D008372 4.0e-31 139.4 114 58.8
MCO04G521 Micromonas commoda HOM05D006659 ORTHO05D008372 4.4e-30 136.0 147 45.6
PRCOL_00006170 Prasinoderma coloniale HOM05D006659 ORTHO05D008372 1.4e-28 131.0 148 43.2
Eucgr.H00371 Eucalyptus grandis HOM05D006659 ORTHO05D008372 1.4e-23 114.4 109 53.2


User provided reference genes

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