Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc03_g13090 Coffea canephora HOM05D006283 ORTHO05D007727 3.7e-168 594.7 285 100.0
Dinv22729 Davidia involucrata HOM05D006283 ORTHO05D007727 2.0e-126 456.1 274 78.5
Manes.11G120300 Manihot esculenta HOM05D006283 ORTHO05D007727 1.9e-124 449.5 270 77.8
TAR362G0864 Trochodendron aralioides HOM05D006283 ORTHO05D007727 2.5e-124 449.1 260 78.5
Peaxi162Scf00126g00015 Petunia axillaris HOM05D006283 ORTHO05D007727 1.6e-123 446.4 263 77.6
Actinidia35975 Actinidia chinensis HOM05D006283 ORTHO05D007727 2.7e-123 445.7 274 76.3
Eucgr.H00372 Eucalyptus grandis HOM05D006283 ORTHO05D007727 8.8e-122 440.7 270 74.4
GSVIVG01010753001 Vitis vinifera HOM05D006283 ORTHO05D007727 1.7e-120 436.4 271 75.6
Atru.chr3.1494 Acer truncatum HOM05D006283 ORTHO05D007727 3.7e-120 435.3 259 75.3
Migut.N02075 Erythranthe guttata HOM05D006283 ORTHO05D007727 3.7e-120 435.3 257 76.7
Hma1.2p1_0847F.1_g227833 Hydrangea macrophylla HOM05D006283 ORTHO05D007727 4.8e-120 434.9 245 81.2
Actinidia34602 Actinidia chinensis HOM05D006283 ORTHO05D007727 6.3e-120 434.5 274 74.8
Ciclev10021635m.g Citrus clementina HOM05D006283 ORTHO05D007727 8.3e-120 434.1 270 74.1
SalBow3G2028 Salvia bowleyana HOM05D006283 ORTHO05D007727 8.3e-120 434.1 270 74.1
MSTRG.9766 Avicennia marina HOM05D006283 ORTHO05D007727 1.4e-119 433.3 282 70.9
CiPaw.02G054900 Carya illinoinensis HOM05D006283 ORTHO05D007727 3.1e-119 432.2 260 74.6
Gohir.D10G129700 Gossypium hirsutum HOM05D006283 ORTHO05D007727 4.1e-119 431.8 268 73.5
Gorai.011G143000 Gossypium raimondii HOM05D006283 ORTHO05D007727 4.1e-119 431.8 268 73.5
Prupe.1G192800 Prunus persica HOM05D006283 ORTHO05D007727 7.0e-119 431.0 271 72.3
TWI15G0224 Tripterygium wilfordii HOM05D006283 ORTHO05D007727 1.6e-118 429.9 261 72.4
TWI15G1054 Tripterygium wilfordii HOM05D006283 ORTHO05D007727 1.6e-118 429.9 261 72.4
Gohir.A10G137000 Gossypium hirsutum HOM05D006283 ORTHO05D007727 2.0e-118 429.5 268 72.8
Thecc.04G180000 Theobroma cacao HOM05D006283 ORTHO05D007727 2.3e-117 426.0 270 71.9
Solyc06g054450.3 Solanum lycopersicum HOM05D006283 ORTHO05D007727 6.5e-117 424.5 261 73.9
Sopen06g019520 Solanum pennellii HOM05D006283 ORTHO05D007727 8.6e-117 424.1 261 73.6
CAN.G1247.5 Capsicum annuum HOM05D006283 ORTHO05D007727 1.1e-116 423.7 274 70.8
Glyma.11G127900 Glycine max HOM05D006283 ORTHO05D007727 1.1e-116 423.7 259 75.3
MD04G1040100 Malus domestica HOM05D006283 ORTHO05D007727 1.5e-116 423.3 270 72.2
RcHm_v2.0_Chr4g0406391 Rosa chinensis HOM05D006283 ORTHO05D007727 1.5e-116 423.3 271 73.1
Potri.019G051300 Populus trichocarpa HOM05D006283 ORTHO05D007727 3.3e-116 422.2 259 74.9
THA.LOC104803704 Tarenaya hassleriana HOM05D006283 ORTHO05D007727 5.5e-116 421.4 274 70.8
Phvul.011G054600 Phaseolus vulgaris HOM05D006283 ORTHO05D007727 1.2e-115 420.2 259 73.7
CANSAT78G1066 Cannabis sativa HOM05D006283 ORTHO05D007727 8.0e-115 417.5 274 70.4
Aqoxy2G04092 Aquilegia oxysepala HOM05D006283 ORTHO05D007727 1.4e-114 416.8 272 69.5
Rhsim09G0027900 Rhododendron simsii HOM05D006283 ORTHO05D007727 1.4e-114 416.8 288 69.1
MELO3C017715.2 Cucumis melo HOM05D006283 ORTHO05D007727 2.3e-114 416.0 252 74.6
VMungo1127G0333 Vigna mungo HOM05D006283 ORTHO05D007727 2.3e-114 416.0 259 73.4
DCAR_029916 Daucus carota HOM05D006283 ORTHO05D007727 4.0e-114 415.2 265 70.6
Nn1g09881 Nelumbo nucifera HOM05D006283 ORTHO05D007727 4.0e-114 415.2 243 76.5
PGR142G0689 Punica granatum HOM05D006283 ORTHO05D007727 5.2e-114 414.8 259 73.0
HanXRQChr16g0525531 Helianthus annuus HOM05D006283 ORTHO05D007727 6.8e-114 414.5 260 72.7
FvH4_4g10770 Fragaria vesca HOM05D006283 ORTHO05D007727 1.2e-113 413.7 267 71.5
Lsat_1_v5_gn_4_30241 Lactuca sativa HOM05D006283 ORTHO05D007727 1.2e-113 413.7 275 70.2
Ca_20784_v3 Cicer arietinum L. HOM05D006283 ORTHO05D007727 1.5e-113 413.3 249 75.9
CsaV3_4G003450 Cucumis sativus L. HOM05D006283 ORTHO05D007727 1.5e-113 413.3 271 70.5
AL5G41290 Arabidopsis lyrata HOM05D006283 ORTHO05D007727 7.5e-113 411.0 270 69.3
PSO017G4585 Papaver somniferum HOM05D006283 ORTHO05D007727 7.5e-113 411.0 248 75.0
PSO675G6362 Papaver somniferum HOM05D006283 ORTHO05D007727 2.2e-112 409.5 269 71.4
TPR.G34200 Trifolium pratense HOM05D006283 ORTHO05D007727 2.8e-112 409.1 248 75.4
Nitab4.5_0000130g0340 Nicotiana tabacum HOM05D006283 ORTHO05D007727 6.3e-112 407.9 267 73.0
AT3G59390 Arabidopsis thaliana HOM05D006283 ORTHO05D007727 1.1e-111 407.1 250 72.0
Sp5g03750 Schrenkiella parvula HOM05D006283 ORTHO05D007727 1.4e-111 406.8 270 69.3
Lj3g0020373 Lotus japonicus HOM05D006283 ORTHO05D007727 3.1e-111 405.6 260 71.9
CARHR169780 Cardamine hirsuta HOM05D006283 ORTHO05D007727 4.1e-111 405.2 270 68.1
Thhalv10006168m.g Eutrema salsugineum HOM05D006283 ORTHO05D007727 4.1e-111 405.2 271 69.0
Medtr4g067140 Medicago truncatula HOM05D006283 ORTHO05D007727 4.1e-111 405.2 257 73.5
ECA234G3618 Erigeron canadensis HOM05D006283 ORTHO05D007727 2.7e-110 402.5 255 72.9
A07p24630 Brassica napus HOM05D006283 ORTHO05D007727 4.5e-110 401.7 249 71.5
Carub.0005s2613 Capsella rubella HOM05D006283 ORTHO05D007727 4.5e-110 401.7 267 68.2
BraA07t30108Z Brassica rapa HOM05D006283 ORTHO05D007727 1.3e-109 400.2 248 71.4
Aa31LG10G13740 Aethionema arabicum HOM05D006283 ORTHO05D007727 2.9e-109 399.1 270 66.3
BolC6t37776H Brassica oleracea HOM05D006283 ORTHO05D007727 2.9e-109 399.1 270 67.4
Sed0010312 Sechium edule HOM05D006283 ORTHO05D007727 2.9e-109 399.1 252 69.8
C06p26110 Brassica napus HOM05D006283 ORTHO05D007727 5.0e-109 398.3 270 67.0
Sc13g0006800 Simmondsia chinensis HOM05D006283 ORTHO05D007727 1.6e-107 393.3 284 64.1
Lalb_Chr01g0003171 Lupinus albus HOM05D006283 ORTHO05D007727 3.6e-107 392.1 258 70.5
Sed0022341 Sechium edule HOM05D006283 ORTHO05D007727 3.6e-107 392.1 264 68.2
Oeu034461.3 Olea europaea HOM05D006283 ORTHO05D007727 4.0e-106 388.7 275 67.3
Lalb_Chr03g0026141 Lupinus albus HOM05D006283 ORTHO05D007727 2.6e-105 386.0 262 69.5
PGSC0003DMG400030791 Solanum tuberosum HOM05D006283 ORTHO05D007727 7.0e-103 377.9 222 76.6
COL.COLO4_07661 Corchorus olitorius HOM05D006283 ORTHO05D007727 6.0e-102 374.8 232 73.3
Duzib151G0050 Durio zibethinus HOM05D006283 ORTHO05D007727 8.0e-99 364.4 237 70.9
FAN12G2405 Fragaria x ananassa HOM05D006283 ORTHO05D007727 6.8e-98 361.3 254 66.9
Zm00001eb406800 Zea mays HOM05D006283 ORTHO05D007727 3.4e-97 359.0 252 62.7
BcaB02g07471 Brassica carinata HOM05D006283 ORTHO05D007727 7.0e-95 351.3 253 64.4
Haze_01514 Corylus avellana HOM05D006283 ORTHO05D007727 7.8e-94 347.8 285 60.0
EL10Ac3g05930 Beta vulgaris HOM05D006283 ORTHO05D007727 1.7e-93 346.7 236 66.9
BcaC08g44981 Brassica carinata HOM05D006283 ORTHO05D007727 5.0e-93 345.1 253 63.6
CDE08G0087 Ceratophyllum demersum HOM05D006283 ORTHO05D007727 1.8e-90 336.7 235 66.0
unitig_747.g21679 Utricularia gibba HOM05D006283 ORTHO05D007727 1.2e-89 334.0 243 60.9
arahy.Tifrunner.gnm1.ann1.7GR0QN Arachis hypogaea HOM05D006283 ORTHO05D007727 2.6e-89 332.8 231 65.4
arahy.Tifrunner.gnm1.ann1.9EYB94 Arachis hypogaea HOM05D006283 ORTHO05D007727 5.8e-89 331.6 231 65.4
Hund12011 Selenicereus undatus HOM05D006283 ORTHO05D007727 2.1e-86 323.2 194 74.7
AUR62015391 Chenopodium quinoa HOM05D006283 ORTHO05D007727 2.8e-83 312.8 193 72.0
HPP92_009172 Vanilla planifolia HOM05D006283 ORTHO05D007727 4.4e-81 305.4 218 64.2
SGA_v2.0_scaffold12G06158 Striga asiatica HOM05D006283 ORTHO05D007727 2.9e-80 302.8 288 55.6
AUR62002299 Chenopodium quinoa HOM05D006283 ORTHO05D007727 5.4e-79 298.5 183 72.7
Duzib268G1109 Durio zibethinus HOM05D006283 ORTHO05D007727 3.5e-78 295.8 175 77.1
Pp3c25_2030 Physcomitrium patens HOM05D006283 ORTHO05D007727 6.6e-77 291.6 248 55.6
Mapoly0093s0081 Marchantia polymorpha HOM05D006283 ORTHO05D007727 9.0e-74 281.2 234 50.4
SMO119G0098 Selaginella moellendorffii HOM05D006283 ORTHO05D007727 2.0e-73 280.0 236 50.8
Glyma.12G052600 Glycine max HOM05D006283 ORTHO05D007727 6.0e-70 268.5 194 67.0
QL10p048744 Quercus lobata HOM05D006283 ORTHO05D007727 6.0e-70 268.5 160 76.2
Lj3A196G22 Lonicera japonica HOM05D006283 ORTHO05D007727 1.1e-66 257.7 138 81.9
Sabra19G0057300 Salix brachista HOM05D006283 ORTHO05D007727 4.6e-54 215.7 150 69.3
SEGI_31631 Sequoiadendron giganteum HOM05D006283 ORTHO05D007727 2.5e-52 209.9 164 57.3
Hma1.2p1_0639F.1_g194055 Hydrangea macrophylla HOM05D006283 ORTHO05D007727 8.2e-51 204.9 131 76.3
Hma1.2p1_0847F.1_g227840 Hydrangea macrophylla HOM05D006283 ORTHO05D007727 8.2e-51 204.9 131 76.3
RcHm_v2.0_Chr4g0406831 Rosa chinensis HOM05D006283 ORTHO05D007727 1.1e-50 204.5 155 63.9
ATR0824G015 Amborella trichopoda HOM05D006283 ORTHO05D007727 1.4e-50 204.1 139 66.2
FAN07G2518 Fragaria x ananassa HOM05D006283 ORTHO05D007727 4.5e-49 199.1 138 70.3
FAN12G0556 Fragaria x ananassa HOM05D006283 ORTHO05D007727 3.2e-47 193.0 129 65.9
QL10p048749 Quercus lobata HOM05D006283 ORTHO05D007727 6.0e-46 188.7 111 75.7
vmacro00624 Vaccinium macrocarpon HOM05D006283 ORTHO05D007727 2.6e-41 173.3 150 57.3
Prupe.1G193700 Prunus persica HOM05D006283 ORTHO05D007727 1.5e-36 157.5 126 59.5
Cre16.g673841 Chlamydomonas reinhardtii HOM05D006283 ORTHO05D007727 3.4e-33 146.4 267 32.6
ClCG07G015660 Citrullus lanatus HOM05D006283 ORTHO05D007727 1.2e-30 137.9 238 40.8
Peaxi162Scf00126g00003 Petunia axillaris HOM05D006283 ORTHO05D007727 9.7e-28 128.3 111 57.7
Psat7g091240 Pisum sativum HOM05D006283 ORTHO05D007727 2.4e-26 123.6 160 46.2
Lj3A196T13 Lonicera japonica HOM05D006283 ORTHO05D007727 5.0e-24 115.9 95 60.0
RcHm_v2.0_Chr4g0406821 Rosa chinensis HOM05D006283 ORTHO05D007727 1.1e-23 114.8 62 80.6
HanXRQChr16g0525261 Helianthus annuus HOM05D006283 ORTHO05D007727 7.4e-20 102.1 68 69.1
vmacro00625 Vaccinium macrocarpon HOM05D006283 ORTHO05D007727 1.3e-16 91.3 60 71.7
Hma1.2p1_0639F.1_g194050 Hydrangea macrophylla HOM05D006283 ORTHO05D007727 1.7e-16 90.9 44 93.2
Hma1.2p1_0847F.1_g227839 Hydrangea macrophylla HOM05D006283 ORTHO05D007727 1.7e-16 90.9 44 93.2
Os11g0267100 Oryza sativa ssp. japonica HOM05D006283 ORTHO05D007727 5.2e-13 79.3 71 52.1
PRCOL_00001858 Prasinoderma coloniale HOM05D006283 ORTHO05D007727 5.2e-13 79.3 146 32.9
C09p49630 Brassica napus HOM05D006283 ORTHO05D007727 4.8e-11 72.8 50 62.0
BolC3t18408H Brassica oleracea HOM05D006283 ORTHO05D007727 4.8e-11 72.8 50 62.0
MCO01G683 Micromonas commoda HOM05D005203 ORTHO05D006383 2.4e-10 70.5 144 30.6
Cfa015166 Carpinus fangiana HOM05D006283 ORTHO05D007727 2.7e-09 67.0 41 73.2
CSS0022675 Camellia sinensis var. sinensis HOM05D006283 ORTHO05D007727 1.0e-08 65.1 78 46.2
CSS0026672 Camellia sinensis var. sinensis HOM05D006283 ORTHO05D007727 1.0e-08 65.1 78 46.2
CSS0010514 Camellia sinensis var. sinensis HOM05D006283 ORTHO05D007727 1.7e-08 64.3 40 70.0
CSS0034877 Camellia sinensis var. sinensis HOM05D006283 ORTHO05D007727 1.7e-08 64.3 40 70.0
BcaC02g08202 Brassica carinata HOM05D000127 ORTHO05D000243 9.4e-07 58.5 37 64.9
HanXRQChr12g0365531 Helianthus annuus HOM05D006283 ORTHO05D007727 2.1e-06 57.4 83 41.0
Ah.07g201980 Amaranthus hybridus HOM05D006283 ORTHO05D007727 2.7e-06 57.0 84 40.5


User provided reference genes

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