Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc03_g12540 Coffea canephora HOM05D006730 ORTHO05D008189 0.0e+00 1322.4 662 100.0
Oeu002416.1 Olea europaea HOM05D006730 ORTHO05D008189 1.4e-114 417.9 664 39.2
MSTRG.27276 Avicennia marina HOM05D006730 ORTHO05D008189 1.1e-98 365.2 679 36.1
Sopen06g029510 Solanum pennellii HOM05D006730 ORTHO05D008189 5.4e-98 362.8 678 36.7
Solyc06g073160.4 Solanum lycopersicum HOM05D006730 ORTHO05D008189 1.2e-97 361.7 678 36.6
Actinidia27097 Actinidia chinensis HOM05D006730 ORTHO05D008189 6.0e-97 359.4 629 39.6
Nitab4.5_0001586g0210 Nicotiana tabacum HOM05D006730 ORTHO05D008189 3.4e-92 343.6 629 36.9
PGSC0003DMG400026917 Solanum tuberosum HOM05D006730 ORTHO05D008189 3.8e-91 340.1 671 35.5
vmacro21172 Vaccinium macrocarpon HOM05D006730 ORTHO05D008189 3.8e-91 340.1 673 35.7
vmacro00655 Vaccinium macrocarpon HOM05D006730 ORTHO05D008189 6.4e-91 339.3 623 36.1
Nitab4.5_0001210g0010 Nicotiana tabacum HOM05D006730 ORTHO05D008189 1.1e-87 328.6 670 35.5
Peaxi162Scf00180g00519 Petunia axillaris HOM05D006730 ORTHO05D008189 1.1e-85 322.0 614 36.5
Oeu029987.1 Olea europaea HOM05D006730 ORTHO05D008189 3.1e-85 320.5 653 35.2
Atru.chr4.1340 Acer truncatum HOM05D006730 ORTHO05D008189 6.9e-85 319.3 678 34.2
Cfa015217 Carpinus fangiana HOM05D006730 ORTHO05D008189 5.8e-84 316.2 667 35.2
Nitab4.5_0002782g0010 Nicotiana tabacum HOM05D006730 ORTHO05D008189 7.6e-84 315.8 665 34.7
TAR633G1963 Trochodendron aralioides HOM05D006730 ORTHO05D008189 6.0e-81 306.2 663 34.4
TAR633G0487 Trochodendron aralioides HOM05D006730 ORTHO05D008189 3.0e-80 303.9 668 33.5
SGA_v2.0_scaffold60G20910 Striga asiatica HOM05D005928 ORTHO05D007500 5.1e-80 303.1 670 35.1
Prupe.8G045700 Prunus persica HOM05D006730 ORTHO05D008189 6.7e-80 302.8 659 34.0
Lj3A110T20 Lonicera japonica HOM05D006730 ORTHO05D008189 4.3e-79 300.1 620 34.2
Duzib151G0982 Durio zibethinus HOM05D006730 ORTHO05D008189 1.6e-78 298.1 663 34.1
SGA_v2.0_scaffold94G28623 Striga asiatica HOM05D006730 ORTHO05D008189 1.6e-78 298.1 669 35.3
Nn1g09713 Nelumbo nucifera HOM05D006730 ORTHO05D008189 6.2e-78 296.2 670 33.6
COL.COLO4_28380 Corchorus olitorius HOM05D006730 ORTHO05D008189 2.4e-77 294.3 659 33.7
QL10p052118 Quercus lobata HOM05D006730 ORTHO05D008189 3.1e-77 293.9 670 33.4
Ciclev10019155m.g Citrus clementina HOM05D006730 ORTHO05D008189 1.1e-74 285.4 668 33.7
Hma1.2p1_0324F.1_g125720 Hydrangea macrophylla HOM05D006730 ORTHO05D008189 6.1e-73 279.6 576 36.5
Thecc.04G171700 Theobroma cacao HOM05D006730 ORTHO05D008189 7.9e-73 279.3 668 32.5
Hma1.2p1_3037F.1_g331960 Hydrangea macrophylla HOM05D006730 ORTHO05D008189 1.8e-72 278.1 576 36.3
MD04G1046800 Malus domestica HOM05D006730 ORTHO05D008189 6.7e-72 276.2 673 33.3
Haze_01419 Corylus avellana HOM05D006730 ORTHO05D008189 1.5e-71 275.0 613 33.8
MELO3C015702.2 Cucumis melo HOM05D006730 ORTHO05D008189 2.5e-71 274.2 654 33.3
FvH4_1g27220 Fragaria vesca HOM05D006730 ORTHO05D008189 1.1e-69 268.9 658 31.9
Manes.04G048400 Manihot esculenta HOM05D006730 ORTHO05D008189 6.9e-69 266.2 669 33.2
Potri.017G018300 Populus trichocarpa HOM05D006730 ORTHO05D008189 6.9e-69 266.2 656 32.8
CsaV3_7G002050 Cucumis sativus L. HOM05D006730 ORTHO05D008189 4.5e-68 263.5 665 32.6
FAN26G1825 Fragaria x ananassa HOM05D006730 ORTHO05D008189 1.0e-67 262.3 649 31.9
FAN19G2476 Fragaria x ananassa HOM05D006730 ORTHO05D008189 2.2e-67 261.2 659 31.6
Sc19g0000330 Simmondsia chinensis HOM05D006730 ORTHO05D008189 2.9e-67 260.8 659 32.0
Eucgr.A00038 Eucalyptus grandis HOM05D006730 ORTHO05D008189 8.5e-67 259.2 664 31.6
Ca_03751_v3 Cicer arietinum L. HOM05D006730 ORTHO05D008189 9.4e-66 255.8 675 31.6
GSVIVG01038091001 Vitis vinifera HOM05D006730 ORTHO05D008189 1.6e-65 255.0 571 32.9
VMungo0720G0522 Vigna mungo HOM05D006730 ORTHO05D008189 3.6e-65 253.8 668 32.9
AL7G49300 Arabidopsis lyrata HOM05D006730 ORTHO05D008189 6.1e-65 253.1 677 31.0
Sabra06G0076300 Salix brachista HOM05D006730 ORTHO05D008189 2.3e-64 251.1 641 32.0
Sed0020880 Sechium edule HOM05D006730 ORTHO05D008189 3.9e-64 250.4 680 31.0
Sabra17G0012500 Salix brachista HOM05D006730 ORTHO05D008189 5.1e-64 250.0 652 32.1
TAR633G2319 Trochodendron aralioides HOM05D006730 ORTHO05D008189 4.3e-63 246.9 535 34.4
Gohir.D02G011000 Gossypium hirsutum HOM05D006730 ORTHO05D008189 7.4e-63 246.1 669 31.7
Glyma.12G050000 Glycine max HOM05D006730 ORTHO05D008189 1.3e-62 245.4 669 31.4
CiPaw.01G173600 Carya illinoinensis HOM05D006730 ORTHO05D008189 1.7e-62 245.0 586 33.3
Phvul.011G201600 Phaseolus vulgaris HOM05D006730 ORTHO05D008189 2.2e-62 244.6 684 32.0
Cpa.g.sc9.329 Carica papaya HOM05D006730 ORTHO05D008189 2.8e-62 244.2 682 30.8
Gorai.005G013400 Gossypium raimondii HOM05D006730 ORTHO05D008189 3.7e-62 243.8 669 31.7
Lsat_1_v5_gn_5_69460 Lactuca sativa HOM05D006730 ORTHO05D008189 3.7e-62 243.8 487 37.8
Ca_07546_v3 Cicer arietinum L. HOM05D006730 ORTHO05D008189 6.3e-62 243.0 663 31.7
Dinv05091 Davidia involucrata HOM05D006730 ORTHO05D008189 8.2e-62 242.7 570 33.5
Carub.0007s3500 Capsella rubella HOM05D006730 ORTHO05D008189 1.4e-61 241.9 664 30.0
PGR102G2296 Punica granatum HOM05D006730 ORTHO05D008189 1.8e-61 241.5 667 30.0
VMungo0647G1321 Vigna mungo HOM05D006730 ORTHO05D008189 2.4e-61 241.1 683 32.7
Psat7g208760 Pisum sativum HOM05D006730 ORTHO05D008189 5.3e-61 240.0 678 31.1
TPR.G34183 Trifolium pratense HOM05D006730 ORTHO05D008189 9.1e-61 239.2 675 31.0
Aa31LG1G25250 Aethionema arabicum HOM05D006730 ORTHO05D008189 2.0e-60 238.0 668 31.3
TWI15G0430 Tripterygium wilfordii HOM05D006730 ORTHO05D008189 1.0e-59 235.7 659 29.9
A05p16170 Brassica napus HOM05D006730 ORTHO05D008189 5.0e-59 233.4 642 30.4
Medtr4g068005 Medicago truncatula HOM05D006730 ORTHO05D008189 5.0e-59 233.4 653 30.9
arahy.Tifrunner.gnm1.ann1.S6BLSS Arachis hypogaea HOM05D006730 ORTHO05D008189 7.2e-58 229.6 668 30.4
SGA_v2.0_scaffold36G14479 Striga asiatica HOM05D000061 ORTHO05D008189 9.4e-58 229.2 654 31.0
AUR62028127 Chenopodium quinoa HOM05D006730 ORTHO05D008189 2.7e-57 227.6 659 30.0
BcaC08g44345 Brassica carinata HOM05D006730 ORTHO05D008189 3.6e-57 227.3 657 29.8
ClCG09G018880 Citrullus lanatus HOM05D006730 ORTHO05D008189 3.6e-57 227.3 645 29.9
C06p17830 Brassica napus HOM05D006730 ORTHO05D008189 4.7e-57 226.9 659 29.7
arahy.Tifrunner.gnm1.ann1.PF62HI Arachis hypogaea HOM05D006730 ORTHO05D008189 1.4e-56 225.3 661 30.3
AT5G40520 Arabidopsis thaliana HOM05D006730 ORTHO05D008189 2.3e-56 224.6 647 30.8
BolC6t36977H Brassica oleracea HOM05D006730 ORTHO05D008189 5.1e-56 223.4 652 29.9
BraA05t20528Z Brassica rapa HOM05D006730 ORTHO05D008189 5.1e-56 223.4 493 34.7
AUR62005936 Chenopodium quinoa HOM05D006730 ORTHO05D008189 8.8e-56 222.6 649 30.4
Lalb_Chr03g0025971 Lupinus albus HOM05D006730 ORTHO05D008189 1.5e-55 221.9 676 31.4
Lalb_Chr03g0026031 Lupinus albus HOM05D006730 ORTHO05D008189 1.5e-55 221.9 676 31.4
Lj3g0015132 Lotus japonicus HOM05D006730 ORTHO05D008189 2.0e-55 221.5 514 33.3
THA.LOC104805724 Tarenaya hassleriana HOM05D006730 ORTHO05D008189 2.0e-55 221.5 673 29.6
HanXRQChr17g0565921 Helianthus annuus HOM05D006730 ORTHO05D008189 2.6e-55 221.1 391 38.9
Sp7g05120 Schrenkiella parvula HOM05D006730 ORTHO05D008189 2.6e-55 221.1 632 28.6
CANSAT56G2182 Cannabis sativa HOM05D006730 ORTHO05D008189 3.3e-55 220.7 578 30.6
CARHR138600 Cardamine hirsuta HOM05D006730 ORTHO05D008189 4.4e-55 220.3 617 30.3
RcHm_v2.0_Chr3g0487611 Rosa chinensis HOM05D006730 ORTHO05D008189 4.4e-55 220.3 438 38.6
CSS0011413 Camellia sinensis var. sinensis HOM05D006730 ORTHO05D008189 8.5e-51 206.1 298 43.3
Hund25530 Selenicereus undatus HOM05D006730 ORTHO05D008189 8.5e-51 206.1 386 36.0
MBI11_g10487_MAGBIO Magnolia biondii HOM05D006730 ORTHO05D008189 2.5e-50 204.5 569 32.0
EL10Ac9g22987 Beta vulgaris HOM05D006730 ORTHO05D008189 9.4e-50 202.6 645 28.8
BcaB02g08030 Brassica carinata HOM05D006730 ORTHO05D008189 1.2e-49 202.2 654 29.5
ECA233G5772 Erigeron canadensis HOM05D005219 ORTHO05D006451 1.8e-48 198.4 559 28.8
Gohir.A02G010500 Gossypium hirsutum HOM05D006730 ORTHO05D008189 1.5e-47 195.3 408 36.0
Thhalv10027675m.g Eutrema salsugineum HOM05D006730 ORTHO05D008189 4.4e-47 193.7 654 29.1
DCAR_027052 Daucus carota HOM05D006730 ORTHO05D008189 5.2e-40 170.2 301 37.9
SHI01154 Sapria himalayana HOM05D006730 ORTHO05D008189 1.7e-38 165.2 400 30.8
ATR0743G243 Amborella trichopoda HOM05D006730 ORTHO05D008189 4.8e-38 163.7 434 31.3
CSS0007333 Camellia sinensis var. sinensis HOM05D006730 ORTHO05D008189 2.7e-36 157.9 297 37.7
CDE07G0581 Ceratophyllum demersum HOM05D006730 ORTHO05D008189 3.5e-36 157.5 679 25.9
PSO017G5839 Papaver somniferum HOM05D006730 ORTHO05D008189 2.0e-31 141.7 400 29.5
FAN28G2072 Fragaria x ananassa HOM05D006730 ORTHO05D008189 1.3e-30 139.0 329 32.5
unitig_26.g9736 Utricularia gibba HOM05D006730 ORTHO05D006349 5.9e-28 130.2 451 26.6
FAN23G1889 Fragaria x ananassa HOM05D006730 ORTHO05D008189 1.7e-27 128.6 488 26.8
Zm00001eb184290 Zea mays HOM05D006730 ORTHO05D008189 8.0e-25 119.8 412 30.1
Os09g0103200 Oryza sativa ssp. japonica HOM05D006730 ORTHO05D008189 3.0e-24 117.9 496 28.4
Ah.10g027080 Amaranthus hybridus HOM05D006730 ORTHO05D008189 6.4e-22 110.2 373 28.2
PSO063G4508 Papaver somniferum HOM05D006730 ORTHO05D008189 4.6e-20 104.0 335 26.3
FAN28G2984 Fragaria x ananassa HOM05D006730 ORTHO05D008189 1.0e-16 92.8 323 25.4
Actinidia26680 Actinidia chinensis HOM05D006730 ORTHO05D008189 2.6e-15 88.2 245 30.6
HanXRQChr12g0385981 Helianthus annuus HOM05D006730 ORTHO05D008189 4.9e-14 84.0 94 48.9
Ah.10g027090 Amaranthus hybridus HOM05D006730 ORTHO05D008189 1.5e-10 72.4 132 33.3
HPP92_022486 Vanilla planifolia HOM05D001064 ORTHO05D000885 2.3e-08 65.1 241 24.1
Nitab4.5_0000946g0050 Nicotiana tabacum HOM05D006730 ORTHO05D008189 2.0e-07 62.0 97 40.2


User provided reference genes

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