Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc03_g12290 Coffea canephora HOM05D001295 ORTHO05D005319 2.4e-240 835.1 429 100.0
Peaxi162Scf00180g00045 Petunia axillaris HOM05D001295 ORTHO05D005319 4.1e-147 525.4 389 67.9
GSVIVG01004102001 Vitis vinifera HOM05D001295 ORTHO05D005319 3.8e-145 518.8 387 65.9
PGSC0003DMG400026920 Solanum tuberosum HOM05D001295 ORTHO05D005319 7.2e-144 514.6 387 68.2
Oeu020777.1 Olea europaea HOM05D001295 ORTHO05D005319 1.0e-142 510.8 387 64.6
CAN.G65.159 Capsicum annuum HOM05D001295 ORTHO05D005319 4.0e-142 508.8 387 67.4
Nitab4.5_0002553g0060 Nicotiana tabacum HOM05D001295 ORTHO05D005319 2.6e-141 506.1 449 61.2
Sopen06g029480 Solanum pennellii HOM05D001295 ORTHO05D005319 4.1e-139 498.8 389 66.6
TAR633G1947 Trochodendron aralioides HOM05D001295 ORTHO05D005319 1.2e-138 497.3 384 64.8
Migut.G01307 Erythranthe guttata HOM05D001295 ORTHO05D005319 1.7e-137 493.4 387 64.1
CSS0006680 Camellia sinensis var. sinensis HOM05D001295 ORTHO05D005319 2.3e-137 493.0 360 68.6
CSS0045865 Camellia sinensis var. sinensis HOM05D001295 ORTHO05D005319 2.9e-137 492.7 360 68.3
Solyc06g073130.4 Solanum lycopersicum HOM05D001295 ORTHO05D005319 2.5e-136 489.6 409 63.3
Lsat_1_v5_gn_3_110661 Lactuca sativa HOM05D001295 ORTHO05D005319 4.0e-134 482.3 385 61.6
Prupe.1G199500 Prunus persica HOM05D001295 ORTHO05D005319 7.5e-133 478.0 391 62.1
PSO837G0039 Papaver somniferum HOM05D001295 ORTHO05D005319 3.5e-130 469.2 384 58.6
Manes.11G126000 Manihot esculenta HOM05D001295 ORTHO05D005319 7.8e-130 468.0 388 59.5
Potri.007G132100 Populus trichocarpa HOM05D001295 ORTHO05D005319 1.7e-129 466.8 388 59.8
DCAR_028425 Daucus carota HOM05D001295 ORTHO05D005319 4.3e-128 462.2 387 61.8
Atru.chr4.1272 Acer truncatum HOM05D001295 ORTHO05D005319 7.3e-128 461.5 390 60.3
HanXRQChr13g0419451 Helianthus annuus HOM05D001295 ORTHO05D005319 7.3e-128 461.5 386 60.9
SalBow8G2942 Salvia bowleyana HOM05D001295 ORTHO05D005319 1.2e-127 460.7 394 61.4
Nitab4.5_0001586g0250 Nicotiana tabacum HOM05D001295 ORTHO05D005319 3.1e-126 456.1 500 52.0
Thecc.04G173300 Theobroma cacao HOM05D001295 ORTHO05D005319 4.4e-125 452.2 386 58.5
CiPaw.01G095500 Carya illinoinensis HOM05D001295 ORTHO05D005319 1.4e-123 447.2 381 59.8
PGR142G2463 Punica granatum HOM05D001295 ORTHO05D005319 7.8e-122 441.4 389 57.1
COL.COLO4_09274 Corchorus olitorius HOM05D001295 ORTHO05D005319 1.3e-121 440.7 386 57.5
VMungo1080G0958 Vigna mungo HOM05D001295 ORTHO05D005319 1.7e-121 440.3 390 57.9
MD04G1046100 Malus domestica HOM05D001295 ORTHO05D005319 2.3e-121 439.9 393 58.0
Nn1g09559 Nelumbo nucifera HOM05D001295 ORTHO05D005319 1.1e-120 437.6 330 63.0
Gorai.005G126300 Gossypium raimondii HOM05D001295 ORTHO05D005319 2.8e-119 433.0 387 57.4
Lj3g0016601 Lotus japonicus HOM05D001295 ORTHO05D005319 1.8e-118 430.3 386 57.0
Psat5g290520 Pisum sativum HOM05D001295 ORTHO05D005319 1.5e-117 427.2 387 55.6
Migut.G01305 Erythranthe guttata HOM05D001295 ORTHO05D005319 2.9e-116 422.9 387 58.1
TPR.G6512 Trifolium pratense HOM05D001295 ORTHO05D005319 2.7e-114 416.4 387 54.8
Glyma.15G028500 Glycine max HOM05D001295 ORTHO05D005319 6.0e-114 415.2 388 55.7
Sed0017723 Sechium edule HOM05D001295 ORTHO05D005319 1.0e-113 414.5 387 52.7
AUR62002356 Chenopodium quinoa HOM05D001295 ORTHO05D005319 1.5e-112 410.6 455 49.9
Medtr2g099125 Medicago truncatula HOM05D001295 ORTHO05D005319 1.5e-112 410.6 386 55.7
Hund12401 Selenicereus undatus HOM05D001295 ORTHO05D005319 8.9e-110 401.4 372 55.6
Sc21g0002910 Simmondsia chinensis HOM05D001295 ORTHO05D005319 1.9e-107 393.7 385 53.5
ATR0743G262 Amborella trichopoda HOM05D001295 ORTHO05D005319 1.2e-106 391.0 387 51.2
Thhalv10001762m.g Eutrema salsugineum HOM05D001295 ORTHO05D005319 1.6e-106 390.6 385 50.1
Cfa015203 Carpinus fangiana HOM05D001295 ORTHO05D005319 2.7e-106 389.8 387 54.3
THA.LOC104803837 Tarenaya hassleriana HOM05D001295 ORTHO05D005319 2.7e-106 389.8 411 50.6
Gohir.D02G111400 Gossypium hirsutum HOM05D001295 ORTHO05D005319 7.8e-106 388.3 386 53.6
Ca_01246_v3 Cicer arietinum L. HOM05D001295 ORTHO05D005319 1.3e-105 387.5 379 53.3
Migut.G01326 Erythranthe guttata HOM05D001295 ORTHO05D005319 4.3e-104 382.5 313 62.6
AL4G42200 Arabidopsis lyrata HOM05D001295 ORTHO05D005319 9.6e-104 381.3 390 50.5
HPP92_007597 Vanilla planifolia HOM05D001295 ORTHO05D005319 3.6e-103 379.4 381 50.1
Carub.0004s2592 Capsella rubella HOM05D001295 ORTHO05D005319 6.2e-103 378.6 394 50.0
BraA05t19365Z Brassica rapa HOM05D001295 ORTHO05D005319 1.1e-102 377.9 394 50.3
arahy.Tifrunner.gnm1.ann1.982DXJ Arachis hypogaea HOM05D001295 ORTHO05D005319 9.0e-102 374.8 363 54.8
ClCG06G001010 Citrullus lanatus HOM05D001295 ORTHO05D005319 9.9e-101 371.3 389 48.6
Aa31LG1G25200 Aethionema arabicum HOM05D001295 ORTHO05D005319 1.3e-100 370.9 385 49.4
Duzib212G0222 Durio zibethinus HOM05D001295 ORTHO05D005319 1.3e-100 370.9 407 51.1
QL10p051312 Quercus lobata HOM05D001295 ORTHO05D005319 1.1e-99 367.9 486 43.2
Gohir.A02G093300 Gossypium hirsutum HOM05D001295 ORTHO05D005319 1.4e-99 367.5 386 51.8
EL10Ac3g06020 Beta vulgaris HOM05D001295 ORTHO05D005319 3.0e-97 359.8 411 48.4
Rhsim09G0020700 Rhododendron simsii HOM05D001295 ORTHO05D005319 2.5e-96 356.7 419 47.5
Actinidia34573 Actinidia chinensis HOM05D001295 ORTHO05D005319 5.3e-94 349.0 285 62.5
Dinv05087 Davidia involucrata HOM05D001295 ORTHO05D005319 5.3e-94 349.0 285 63.5
Sp4g25550 Schrenkiella parvula HOM05D001295 ORTHO05D005319 1.2e-93 347.8 367 49.3
A05p03770 Brassica napus HOM05D001295 ORTHO05D005319 7.6e-93 345.1 369 48.8
BcaB02g08938 Brassica carinata HOM05D001295 ORTHO05D005319 1.3e-92 344.4 367 48.2
RhsimUnG0137700 Rhododendron simsii HOM05D001295 ORTHO05D005319 3.8e-92 342.8 284 60.9
AUR62023829 Chenopodium quinoa HOM05D001295 ORTHO05D005319 3.2e-91 339.7 390 48.7
BcaC02g12392 Brassica carinata HOM05D001295 ORTHO05D005319 3.5e-90 336.3 373 47.5
C04p04470 Brassica napus HOM05D001295 ORTHO05D005319 3.5e-90 336.3 373 47.5
MSTRG.4291 Avicennia marina HOM05D001295 ORTHO05D005319 1.0e-89 334.7 281 63.7
BolC4t22080H Brassica oleracea HOM05D001295 ORTHO05D005319 6.7e-89 332.0 373 46.9
SGA_v2.0_scaffold12G06175 Striga asiatica HOM05D001295 ORTHO05D005319 3.3e-88 329.7 367 50.7
arahy.Tifrunner.gnm1.ann1.CA0DYB Arachis hypogaea HOM05D001295 ORTHO05D005319 9.6e-88 328.2 389 48.3
arahy.Tifrunner.gnm1.ann1.1HI5HP Arachis hypogaea HOM05D001295 ORTHO05D005319 1.4e-86 324.3 389 47.8
MELO3C022439.2 Cucumis melo HOM05D001295 ORTHO05D005319 1.0e-84 318.2 385 43.4
PSO017G5265 Papaver somniferum HOM05D001295 ORTHO05D005319 3.2e-83 313.2 281 54.8
vmacro00676 Vaccinium macrocarpon HOM05D001295 ORTHO05D005319 2.7e-82 310.1 213 72.3
Mapoly0209s0009 Marchantia polymorpha HOM05D001295 ORTHO05D005319 1.3e-79 301.2 375 45.6
Aqoxy5G00377 Aquilegia oxysepala HOM05D001295 ORTHO05D005319 6.2e-79 298.9 284 54.6
AagrBONN_evm.TU.Sc2ySwM_228.190 Anthoceros agrestis HOM05D001295 ORTHO05D005319 1.4e-78 297.7 416 42.8
Phvul.005G154600 Phaseolus vulgaris HOM05D001295 ORTHO05D005319 1.2e-74 284.6 314 50.6
QL10p051666 Quercus lobata HOM05D001295 ORTHO05D005319 2.7e-74 283.5 269 53.9
Eucgr.H00340 Eucalyptus grandis HOM05D001295 ORTHO05D005319 7.9e-74 282.0 288 54.2
unitig_37.g12026 Utricularia gibba HOM05D001295 ORTHO05D005319 2.5e-72 276.9 215 63.7
Sabra07G0119100 Salix brachista HOM05D001295 ORTHO05D005319 6.3e-71 272.3 377 42.7
CsaV3_6G006850 Cucumis sativus L. HOM05D005724 ORTHO05D006636 1.2e-69 268.1 284 46.8
Ciclev10021666m.g Citrus clementina HOM05D001295 ORTHO05D005319 9.4e-67 258.5 266 53.4
COL.COLO4_21796 Corchorus olitorius HOM05D001295 ORTHO05D005319 4.6e-66 256.1 256 55.5
Gohir.D08G098300 Gossypium hirsutum HOM05D001295 ORTHO05D005319 2.0e-64 250.8 241 56.0
Gorai.004G105900 Gossypium raimondii HOM05D001295 ORTHO05D005319 4.3e-64 249.6 241 55.6
Lalb_Chr14g0372571 Lupinus albus HOM05D001295 ORTHO05D005319 1.3e-63 248.1 290 47.9
SMO337G0100 Selaginella moellendorffii HOM05D001295 ORTHO05D005319 2.2e-63 247.3 265 48.3
ECA240G1882 Erigeron canadensis HOM05D001295 ORTHO05D005319 4.8e-63 246.1 191 63.9
TWI15G0408 Tripterygium wilfordii HOM05D001295 ORTHO05D005319 2.4e-62 243.8 272 51.1
Sabra07G0107500 Salix brachista HOM05D001295 ORTHO05D005319 4.1e-62 243.0 258 53.5
Sabra07G0119300 Salix brachista HOM05D001295 ORTHO05D005319 7.9e-58 228.8 244 53.7
CARHR138550 Cardamine hirsuta HOM05D001295 ORTHO05D005319 1.0e-57 228.4 290 43.1
Lalb_Chr22g0352051 Lupinus albus HOM05D001295 ORTHO05D005319 1.1e-56 224.9 267 46.4
Gohir.A08G092500 Gossypium hirsutum HOM05D001295 ORTHO05D005319 2.2e-55 220.7 241 52.3
AL3G12950 Arabidopsis lyrata HOM05D001295 ORTHO05D005319 3.1e-54 216.9 255 49.0
Manes.04G047700 Manihot esculenta HOM05D001295 ORTHO05D005319 1.2e-53 214.9 241 50.6
FAN24G0827 Fragaria x ananassa HOM05D001295 ORTHO05D005319 2.6e-53 213.8 254 47.2
FAN27G1301 Fragaria x ananassa HOM05D001295 ORTHO05D005319 3.5e-53 213.4 254 47.2
RcHm_v2.0_Chr6g0292651 Rosa chinensis HOM05D001295 ORTHO05D005319 3.5e-53 213.4 254 48.4
Ciclev10021418m.g Citrus clementina HOM05D001295 ORTHO05D005319 1.0e-52 211.8 299 43.8
CsaV3_4G002500 Cucumis sativus L. HOM05D001295 ORTHO05D005319 1.3e-52 211.5 243 49.4
Zm00001eb064040 Zea mays HOM05D001295 ORTHO05D005319 1.3e-52 211.5 297 42.8
Lj3C135G1 Lonicera japonica HOM05D001295 ORTHO05D005319 2.9e-52 210.3 297 45.1
FvH4_2g24830 Fragaria vesca HOM05D001295 ORTHO05D005319 5.0e-52 209.5 254 46.9
AT3G03320 Arabidopsis thaliana HOM05D001295 ORTHO05D005319 8.5e-52 208.8 264 47.3
Migut.G01331 Erythranthe guttata HOM05D001295 ORTHO05D005319 1.1e-51 208.4 202 56.4
Sed0000422 Sechium edule HOM05D001295 ORTHO05D005319 1.9e-51 207.6 257 46.7
ClCG07G011710 Citrullus lanatus HOM05D001295 ORTHO05D005319 3.2e-51 206.8 237 51.9
BraA05t23124Z Brassica rapa HOM05D001295 ORTHO05D005319 2.7e-50 203.8 267 47.2
Thhalv10021391m.g Eutrema salsugineum HOM05D001295 ORTHO05D005319 4.7e-50 203.0 255 45.9
A05p43870 Brassica napus HOM05D001295 ORTHO05D005319 6.1e-50 202.6 267 47.2
Sp3g02350 Schrenkiella parvula HOM05D001295 ORTHO05D005319 8.0e-50 202.2 255 46.7
Carub.0003s0249 Capsella rubella HOM05D001295 ORTHO05D005319 1.0e-49 201.8 255 47.5
CARHR077360 Cardamine hirsuta HOM05D001295 ORTHO05D005319 1.0e-49 201.8 255 45.9
THA.LOC104820845 Tarenaya hassleriana HOM05D001295 ORTHO05D005319 1.8e-49 201.1 254 47.6
Thecc.04G173200 Theobroma cacao HOM05D001295 ORTHO05D005319 6.7e-49 199.1 204 53.4
C05p63460 Brassica napus HOM05D001295 ORTHO05D005319 3.3e-48 196.8 267 46.1
BolC5t35010H Brassica oleracea HOM05D001295 ORTHO05D005319 4.4e-48 196.4 267 46.4
Sabra07G0119200 Salix brachista HOM05D001295 ORTHO05D005319 5.7e-48 196.1 212 50.0
FAN15G1214 Fragaria x ananassa HOM05D001295 ORTHO05D005319 3.7e-47 193.4 264 43.9
BcaC05g30303 Brassica carinata HOM05D001295 ORTHO05D005319 5.3e-46 189.5 260 45.4
Aa31LG5G13780 Aethionema arabicum HOM05D001295 ORTHO05D005319 3.2e-43 180.3 272 41.9
Pp3c13_1370 Physcomitrium patens HOM05D001295 ORTHO05D005319 1.6e-42 177.9 292 39.4
Hma1.2p1_0401F.1_g144800 Hydrangea macrophylla HOM05D001295 ORTHO05D005319 3.6e-42 176.8 127 66.9
vmacro00675 Vaccinium macrocarpon HOM05D001295 ORTHO05D005319 3.0e-41 173.7 170 54.7
Cpa.g.sc9.324 Carica papaya HOM05D001295 ORTHO05D005319 3.7e-39 166.8 127 63.0
AT2G43465 Arabidopsis thaliana HOM05D001295 ORTHO05D005319 1.6e-37 161.4 212 44.8
C01p44730 Brassica napus HOM05D001295 ORTHO05D005319 1.0e-36 158.7 304 35.2
SalBow5G4879 Salvia bowleyana HOM05D001295 ORTHO05D005319 8.8e-33 145.6 162 50.6
Haze_01445 Corylus avellana HOM05D001295 ORTHO05D005319 1.6e-29 134.8 154 49.4
Haze_01447 Corylus avellana HOM05D001295 ORTHO05D005319 5.9e-29 132.9 72 80.6
A09p42860 Brassica napus HOM05D001295 ORTHO05D005319 6.6e-28 129.4 236 36.0
Lalb_Chr14g0372561 Lupinus albus HOM05D001295 ORTHO05D005319 1.8e-25 121.3 64 78.1
BolC2t06464H Brassica oleracea HOM05D001295 ORTHO05D005319 2.3e-25 120.9 282 32.3
Lj3g0015879 Lotus japonicus HOM05D001295 ORTHO05D005319 1.5e-24 118.2 159 44.0
Lj3A83T16 Lonicera japonica HOM05D001295 ORTHO05D005319 1.2e-18 98.6 65 72.3
Sabra17G0001700 Salix brachista HOM05D001295 ORTHO05D005319 4.4e-16 90.1 102 48.0
Glyma.13G345802 Glycine max HOM05D001295 ORTHO05D005319 7.5e-16 89.4 132 39.4
Sabra17G0015200 Salix brachista HOM05D001295 ORTHO05D005319 1.4e-14 85.1 179 36.3
Cre16.g668650 Chlamydomonas reinhardtii HOM05D001295 ORTHO05D005319 2.7e-13 80.9 121 38.0
CBR_g21778 Chara braunii HOM05D001295 ORTHO05D005319 1.1e-11 75.5 330 25.2
AL4G36180 Arabidopsis lyrata HOM05D001295 ORTHO05D005319 2.8e-10 70.9 129 38.0
Sabra17G0001500 Salix brachista HOM05D001295 ORTHO05D005319 2.8e-10 70.9 80 47.5
Sabra17G0000500 Salix brachista HOM05D001295 ORTHO05D005319 1.1e-09 68.9 80 46.2
MELO3C001160.2 Cucumis melo HOM05D001295 ORTHO05D005319 1.4e-09 68.6 67 56.7
Medtr2g027210 Medicago truncatula HOM05D001295 ORTHO05D005319 4.0e-09 67.0 81 44.4


User provided reference genes

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