Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc03_g11910 Coffea canephora HOM05D003153 ORTHO05D003549 9.0e-22 105.9 50 100.0
Cc01_g11570 Coffea canephora HOM05D003153 ORTHO05D003549 5.1e-17 90.1 49 87.8
Nitab4.5_0007510g0010 Nicotiana tabacum HOM05D003153 ORTHO05D003549 1.8e-14 81.6 49 75.5
Peaxi162Scf00389g00810 Petunia axillaris HOM05D003153 ORTHO05D003549 1.8e-14 81.6 49 73.5
Nitab4.5_0001802g0130 Nicotiana tabacum HOM05D003153 ORTHO05D003549 3.1e-14 80.9 49 73.5
Nitab4.5_0002129g0130 Nicotiana tabacum HOM05D003153 ORTHO05D003549 3.1e-14 80.9 49 73.5
CAN.G553.14 Capsicum annuum HOM05D003153 ORTHO05D003549 4.1e-14 80.5 49 73.5
Nitab4.5_0000022g0160 Nicotiana tabacum HOM05D003153 ORTHO05D003549 4.1e-14 80.5 49 73.5
Sc06g0010600 Simmondsia chinensis HOM05D003153 ORTHO05D003549 9.1e-14 79.3 49 75.5
PGSC0003DMG400027374 Solanum tuberosum HOM05D003153 ORTHO05D003549 9.1e-14 79.3 49 71.4
Solyc06g005010.1 Solanum lycopersicum HOM05D003153 ORTHO05D003549 1.2e-13 79.0 49 73.5
Gorai.003G102200 Gossypium raimondii HOM05D003153 ORTHO05D003549 1.5e-13 78.6 49 69.4
PGSC0003DMG400023247 Solanum tuberosum HOM05D003153 ORTHO05D003549 1.5e-13 78.6 49 71.4
Gohir.A01G133300 Gossypium hirsutum HOM05D003153 ORTHO05D003549 2.0e-13 78.2 49 71.4
Gohir.D01G117900 Gossypium hirsutum HOM05D003153 ORTHO05D003549 2.0e-13 78.2 49 71.4
Gorai.002G143400 Gossypium raimondii HOM05D003153 ORTHO05D003549 2.0e-13 78.2 49 71.4
Solyc11g072450.2 Solanum lycopersicum HOM05D003153 ORTHO05D003549 2.0e-13 78.2 49 69.4
Sopen11g030090 Solanum pennellii HOM05D003153 ORTHO05D003549 2.0e-13 78.2 49 69.4
Ciclev10032923m.g Citrus clementina HOM05D003153 ORTHO05D003549 2.6e-13 77.8 49 71.4
Gohir.D09G169900 Gossypium hirsutum HOM05D003153 ORTHO05D003549 2.6e-13 77.8 49 71.4
Peaxi162Scf00123g01121 Petunia axillaris HOM05D003153 ORTHO05D003549 2.6e-13 77.8 49 69.4
EL10Ac9g22446 Beta vulgaris HOM05D003153 ORTHO05D003549 3.4e-13 77.4 49 73.5
Lalb_Chr21g0305931 Lupinus albus HOM05D003153 ORTHO05D003549 3.4e-13 77.4 49 69.4
Oeu012671.1 Olea europaea HOM05D003153 ORTHO05D003549 3.4e-13 77.4 49 71.4
CAN.G224.11 Capsicum annuum HOM05D003153 ORTHO05D003549 5.9e-13 76.6 49 69.4
Oeu017392.1 Olea europaea HOM05D003153 ORTHO05D003549 5.9e-13 76.6 49 71.4
Sopen06g001020 Solanum pennellii HOM05D003153 ORTHO05D003549 5.9e-13 76.6 49 71.4
MSTRG.21145 Avicennia marina HOM05D003153 ORTHO05D003549 7.7e-13 76.3 49 69.4
CSS0006958 Camellia sinensis var. sinensis HOM05D003153 ORTHO05D003549 7.7e-13 76.3 49 67.3
Gohir.D01G038200 Gossypium hirsutum HOM05D003153 ORTHO05D003549 1.0e-12 75.9 49 69.4
Oeu036290.2 Olea europaea HOM05D003153 ORTHO05D003549 1.0e-12 75.9 49 67.3
SGA_v2.0_scaffold2G00924 Striga asiatica HOM05D003153 ORTHO05D003549 1.0e-12 75.9 49 67.3
Ca_10590_v3 Cicer arietinum L. HOM05D003153 ORTHO05D003549 1.3e-12 75.5 49 65.3
Duzib114G1009 Durio zibethinus HOM05D003153 ORTHO05D003549 1.3e-12 75.5 49 69.4
Lalb_Chr02g0141911 Lupinus albus HOM05D003153 ORTHO05D003549 1.3e-12 75.5 49 65.3
MSTRG.18641 Avicennia marina HOM05D003153 ORTHO05D003549 1.7e-12 75.1 49 67.3
Duzib106G0636 Durio zibethinus HOM05D003153 ORTHO05D003549 1.7e-12 75.1 49 69.4
Sc15g0001660 Simmondsia chinensis HOM05D003153 ORTHO05D003549 1.7e-12 75.1 49 69.4
Actinidia07114 Actinidia chinensis HOM05D003153 ORTHO05D003549 2.2e-12 74.7 49 67.3
Migut.N02621 Erythranthe guttata HOM05D003153 ORTHO05D003549 2.2e-12 74.7 49 65.3
Gohir.A05G345000 Gossypium hirsutum HOM05D003153 ORTHO05D003549 2.2e-12 74.7 49 69.4
Gohir.D04G083333 Gossypium hirsutum HOM05D003153 ORTHO05D003549 2.2e-12 74.7 49 69.4
Gohir.D11G323000 Gossypium hirsutum HOM05D003153 ORTHO05D003549 2.2e-12 74.7 49 69.4
Gorai.003G100000 Gossypium raimondii HOM05D003153 ORTHO05D003549 2.2e-12 74.7 49 69.4
Gorai.005G219300 Gossypium raimondii HOM05D003153 ORTHO05D003549 2.2e-12 74.7 49 69.4
Gorai.006G125300 Gossypium raimondii HOM05D003153 ORTHO05D003549 2.2e-12 74.7 49 69.4
Lj5g0026554 Lotus japonicus HOM05D003153 ORTHO05D003549 2.2e-12 74.7 49 65.3
THA.LOC104803185 Tarenaya hassleriana HOM05D003153 ORTHO05D003549 2.2e-12 74.7 49 67.3
arahy.Tifrunner.gnm1.ann1.8WS310 Arachis hypogaea HOM05D003153 ORTHO05D003549 2.9e-12 74.3 49 65.3
arahy.Tifrunner.gnm1.ann1.GW1PTG Arachis hypogaea HOM05D003153 ORTHO05D003549 2.9e-12 74.3 49 65.3
arahy.Tifrunner.gnm1.ann1.SR33X7 Arachis hypogaea HOM05D003153 ORTHO05D003549 2.9e-12 74.3 49 65.3
Aa31LG10G7410 Aethionema arabicum HOM05D003153 ORTHO05D003549 3.8e-12 73.9 49 67.3
TPR.G1809 Trifolium pratense HOM05D003153 ORTHO05D003549 3.8e-12 73.9 49 65.3
Eucgr.G02804 Eucalyptus grandis HOM05D003153 ORTHO05D003549 5.0e-12 73.6 49 67.3
Gohir.D09G241600 Gossypium hirsutum HOM05D003153 ORTHO05D003549 5.0e-12 73.6 49 69.4
Gorai.006G232900 Gossypium raimondii HOM05D003153 ORTHO05D003549 5.0e-12 73.6 49 67.3
THA.LOC104823507 Tarenaya hassleriana HOM05D003153 ORTHO05D003549 5.0e-12 73.6 49 65.3
Thecc.10G068600 Theobroma cacao HOM05D003153 ORTHO05D003549 5.0e-12 73.6 49 67.3
VMungo0720G0580 Vigna mungo HOM05D003153 ORTHO05D003549 5.0e-12 73.6 49 63.3
Cpa.g.sc60.52 Carica papaya HOM05D003153 ORTHO05D003549 6.5e-12 73.2 49 65.3
Dinv01414 Davidia involucrata HOM05D003153 ORTHO05D003549 6.5e-12 73.2 49 69.4
Gohir.D11G308400 Gossypium hirsutum HOM05D003153 ORTHO05D003549 6.5e-12 73.2 49 67.3
Gorai.012G094100 Gossypium raimondii HOM05D003153 ORTHO05D003549 6.5e-12 73.2 49 67.3
MD01G1130700 Malus domestica HOM05D003153 ORTHO05D003549 6.5e-12 73.2 49 65.3
MD07G1178800 Malus domestica HOM05D003153 ORTHO05D003549 6.5e-12 73.2 49 65.3
PGR142G1973 Punica granatum HOM05D003153 ORTHO05D003549 6.5e-12 73.2 49 65.3
SalBow3G0590 Salvia bowleyana HOM05D003153 ORTHO05D003549 6.5e-12 73.2 49 63.3
unitig_0.g1036 Utricularia gibba HOM05D003153 ORTHO05D003549 6.5e-12 73.2 49 63.3
unitig_61.g26168 Utricularia gibba HOM05D003153 ORTHO05D003549 6.5e-12 73.2 49 63.3
CARHR162070 Cardamine hirsuta HOM05D003153 ORTHO05D003549 8.5e-12 72.8 49 65.3
Gorai.001G229900 Gossypium raimondii HOM05D003153 ORTHO05D003549 8.5e-12 72.8 49 67.3
Lj2A1036T53 Lonicera japonica HOM05D003153 ORTHO05D003549 8.5e-12 72.8 49 65.3
BcaB01g00381 Brassica carinata HOM05D003153 ORTHO05D003549 1.1e-11 72.4 49 61.2
BcaB02g08579 Brassica carinata HOM05D003153 ORTHO05D003549 1.1e-11 72.4 49 61.2
BcaC02g09267 Brassica carinata HOM05D003153 ORTHO05D003549 1.1e-11 72.4 49 61.2
BcaC07g39600 Brassica carinata HOM05D003153 ORTHO05D003549 1.1e-11 72.4 49 61.2
A03p48820 Brassica napus HOM05D003153 ORTHO05D003549 1.1e-11 72.4 49 61.2
A04p07100 Brassica napus HOM05D003153 ORTHO05D003549 1.1e-11 72.4 49 61.2
A09p45360 Brassica napus HOM05D003153 ORTHO05D003549 1.1e-11 72.4 49 61.2
C04p40680 Brassica napus HOM05D003153 ORTHO05D003549 1.1e-11 72.4 49 61.2
C07p46910 Brassica napus HOM05D003153 ORTHO05D003549 1.1e-11 72.4 49 61.2
C08p27540 Brassica napus HOM05D003153 ORTHO05D003549 1.1e-11 72.4 49 61.2
BolC4t25651H Brassica oleracea HOM05D003153 ORTHO05D003549 1.1e-11 72.4 49 61.2
BolC7t45207H Brassica oleracea HOM05D003153 ORTHO05D003549 1.1e-11 72.4 49 61.2
BolC8t50374H Brassica oleracea HOM05D003153 ORTHO05D003549 1.1e-11 72.4 49 61.2
BraA03t13982Z Brassica rapa HOM05D003153 ORTHO05D003549 1.1e-11 72.4 49 61.2
BraA04t16407Z Brassica rapa HOM05D003153 ORTHO05D003549 1.1e-11 72.4 49 61.2
BraA09t40000Z Brassica rapa HOM05D003153 ORTHO05D003549 1.1e-11 72.4 49 61.2
AUR62036269 Chenopodium quinoa HOM05D003153 ORTHO05D003549 1.1e-11 72.4 49 67.3
AUR62039719 Chenopodium quinoa HOM05D003153 ORTHO05D003549 1.1e-11 72.4 49 67.3
Glyma.20G177700 Glycine max HOM05D003153 ORTHO05D003549 1.1e-11 72.4 49 61.2
Gorai.012G102600 Gossypium raimondii HOM05D003153 ORTHO05D003549 1.1e-11 72.4 49 67.3
HanXRQChr11g0351551 Helianthus annuus HOM05D003153 ORTHO05D003549 1.1e-11 72.4 49 61.2
Lsat_1_v5_gn_6_26321 Lactuca sativa HOM05D003153 ORTHO05D003549 1.1e-11 72.4 49 61.2
QL08p056772 Quercus lobata HOM05D003153 ORTHO05D003549 1.1e-11 72.4 49 65.3
ECA248G0726 Erigeron canadensis HOM05D003153 ORTHO05D003549 1.4e-11 72.0 49 61.2
Thhalv10017326m.g Eutrema salsugineum HOM05D003153 ORTHO05D003549 1.4e-11 72.0 49 63.3
Glyma.10G213400 Glycine max HOM05D003153 ORTHO05D003549 1.4e-11 72.0 49 61.2
Phvul.007G092100 Phaseolus vulgaris HOM05D003153 ORTHO05D003549 1.4e-11 72.0 49 61.2
Sp5g09960 Schrenkiella parvula HOM05D003153 ORTHO05D003549 1.4e-11 72.0 49 63.3
TWI38G1590 Tripterygium wilfordii HOM05D003153 ORTHO05D003549 1.4e-11 72.0 49 65.3
TWI63G1675 Tripterygium wilfordii HOM05D003153 ORTHO05D003549 1.4e-11 72.0 49 63.3
Actinidia03747 Actinidia chinensis HOM05D003153 ORTHO05D003549 1.9e-11 71.6 49 63.3
AL5G32930 Arabidopsis lyrata HOM05D003153 ORTHO05D003549 1.9e-11 71.6 49 61.2
AT3G52300 Arabidopsis thaliana HOM05D003153 ORTHO05D003549 1.9e-11 71.6 49 61.2
Carub.0005s1866 Capsella rubella HOM05D003153 ORTHO05D003549 1.9e-11 71.6 49 61.2
ClCG05G020840 Citrullus lanatus HOM05D003153 ORTHO05D003549 1.9e-11 71.6 49 63.3
Thhalv10010770m.g Eutrema salsugineum HOM05D003153 ORTHO05D003549 1.9e-11 71.6 49 61.2
Gohir.1Z049383 Gossypium hirsutum HOM05D003153 ORTHO05D003549 1.9e-11 71.6 49 67.3
Gohir.A02G156900 Gossypium hirsutum HOM05D003153 ORTHO05D003549 1.9e-11 71.6 49 67.3
Gohir.A03G114800 Gossypium hirsutum HOM05D003153 ORTHO05D003549 1.9e-11 71.6 49 67.3
Gohir.A13G139960 Gossypium hirsutum HOM05D003153 ORTHO05D003549 1.9e-11 71.6 49 67.3
Gohir.D01G098050 Gossypium hirsutum HOM05D003153 ORTHO05D003549 1.9e-11 71.6 49 67.3
Gohir.D10G083700 Gossypium hirsutum HOM05D003153 ORTHO05D003549 1.9e-11 71.6 49 67.3
Gohir.D10G083766 Gossypium hirsutum HOM05D003153 ORTHO05D003549 1.9e-11 71.6 49 67.3
Gohir.D13G141401 Gossypium hirsutum HOM05D003153 ORTHO05D003549 1.9e-11 71.6 49 67.3
Gorai.010G022100 Gossypium raimondii HOM05D004417 ORTHO05D003549 1.9e-11 71.6 49 67.3
Gorai.011G113600 Gossypium raimondii HOM05D003153 ORTHO05D003549 1.9e-11 71.6 49 67.3
Prupe.2G217900 Prunus persica HOM05D003153 ORTHO05D003549 1.9e-11 71.6 49 65.3
Sp4g18080 Schrenkiella parvula HOM05D003153 ORTHO05D003549 1.9e-11 71.6 49 61.2
CSS0048017 Camellia sinensis var. sinensis HOM05D003153 ORTHO05D003549 2.5e-11 71.2 45 68.9
CiPaw.02G176400 Carya illinoinensis HOM05D003153 ORTHO05D003549 2.5e-11 71.2 49 63.3
COL.COLO4_23730 Corchorus olitorius HOM05D003153 ORTHO05D003549 2.5e-11 71.2 49 63.3
Lj1A184T44 Lonicera japonica HOM05D003153 ORTHO05D003549 2.5e-11 71.2 49 67.3
Manes.07G102500 Manihot esculenta HOM05D003153 ORTHO05D003549 2.5e-11 71.2 49 61.2
Sed0013225 Sechium edule HOM05D003153 ORTHO05D003549 2.5e-11 71.2 49 63.3
HanXRQChr13g0401541 Helianthus annuus HOM05D003153 ORTHO05D003549 3.2e-11 70.9 49 59.2
Medtr1g095830 Medicago truncatula HOM05D003153 ORTHO05D003549 3.2e-11 70.9 49 61.2
Potri.008G043800 Populus trichocarpa HOM05D003153 ORTHO05D003549 3.2e-11 70.9 49 63.3
Sabra08G0030300 Salix brachista HOM05D003153 ORTHO05D003549 3.2e-11 70.9 49 63.3
Sed0021432 Sechium edule HOM05D003153 ORTHO05D003549 3.2e-11 70.9 49 63.3
Atru.chr12.646 Acer truncatum HOM05D003153 ORTHO05D003549 4.2e-11 70.5 49 61.2
Atru.chr12.673 Acer truncatum HOM05D003153 ORTHO05D003549 4.2e-11 70.5 49 61.2
HanXRQChr06g0164581 Helianthus annuus HOM05D003153 ORTHO05D003549 4.2e-11 70.5 49 59.2
Potri.010G217800 Populus trichocarpa HOM05D003153 ORTHO05D003549 4.2e-11 70.5 49 61.2
RcHm_v2.0_Chr1g0364071 Rosa chinensis HOM05D003153 ORTHO05D003549 4.2e-11 70.5 49 61.2
MELO3C012445.2 Cucumis melo HOM05D003153 ORTHO05D003549 5.5e-11 70.1 49 61.2
Dinv11804 Davidia involucrata HOM05D003153 ORTHO05D003549 5.5e-11 70.1 49 63.3
Gohir.D10G134850 Gossypium hirsutum HOM05D003153 ORTHO05D003549 5.5e-11 70.1 49 65.3
CsaV3_5G036470 Cucumis sativus L. HOM05D003153 ORTHO05D003549 7.2e-11 69.7 49 61.2
Nn2g10676 Nelumbo nucifera HOM05D003153 ORTHO05D003549 7.2e-11 69.7 49 65.3
vmacro03171 Vaccinium macrocarpon HOM05D003153 ORTHO05D003549 7.2e-11 69.7 50 64.0
Haze_16932 Corylus avellana HOM05D003153 ORTHO05D003549 9.4e-11 69.3 49 61.2
Dinv32792 Davidia involucrata HOM05D003153 ORTHO05D003549 9.4e-11 69.3 49 63.3
Migut.D02181 Erythranthe guttata HOM05D003153 ORTHO05D003549 9.4e-11 69.3 49 57.1
FAN06G2026 Fragaria x ananassa HOM05D003153 ORTHO05D003549 9.4e-11 69.3 51 64.7
Lsat_1_v5_gn_1_50021 Lactuca sativa HOM05D003153 ORTHO05D003549 9.4e-11 69.3 49 57.1
Manes.10G043000 Manihot esculenta HOM05D003153 ORTHO05D003549 9.4e-11 69.3 46 67.4
Sabra10G0168500 Salix brachista HOM05D003153 ORTHO05D003549 9.4e-11 69.3 49 59.2
Ah.01g002740 Amaranthus hybridus HOM05D003153 ORTHO05D003549 2.1e-10 68.2 49 63.3
Cfa001597 Carpinus fangiana HOM05D003153 ORTHO05D003549 2.1e-10 68.2 49 59.2
Nn2g13006 Nelumbo nucifera HOM05D003153 ORTHO05D003549 2.1e-10 68.2 49 63.3
CiPaw.01G276200 Carya illinoinensis HOM05D003153 ORTHO05D003549 2.7e-10 67.8 49 59.2
DCAR_018836 Daucus carota HOM05D003153 ORTHO05D003549 2.7e-10 67.8 49 57.1
FvH4_7g20110 Fragaria vesca HOM05D003153 ORTHO05D003549 2.7e-10 67.8 51 62.7
FAN01G2885 Fragaria x ananassa HOM05D003153 ORTHO05D003549 2.7e-10 67.8 51 62.7
FAN10G0601 Fragaria x ananassa HOM05D003153 ORTHO05D003549 2.7e-10 67.8 51 62.7
Rhsim13G0092300 Rhododendron simsii HOM05D003153 ORTHO05D003549 2.7e-10 67.8 47 68.1
ATR1158G031 Amborella trichopoda HOM05D003153 ORTHO05D003549 3.6e-10 67.4 49 59.2
TAR633G2137 Trochodendron aralioides HOM05D003153 ORTHO05D003549 3.6e-10 67.4 49 61.2
ATR0693G204 Amborella trichopoda HOM05D003153 ORTHO05D003549 4.7e-10 67.0 49 59.2
TAR636G2783 Trochodendron aralioides HOM05D003153 ORTHO05D003549 4.7e-10 67.0 49 61.2
Carub.0004s1758 Capsella rubella HOM05D003153 ORTHO05D003549 6.1e-10 66.6 49 59.2
FAN03G1468 Fragaria x ananassa HOM05D003153 ORTHO05D003549 6.1e-10 66.6 51 60.8
PSO339G4741 Papaver somniferum HOM05D003153 ORTHO05D003549 7.9e-10 66.2 49 61.2
Ah.01g014920 Amaranthus hybridus HOM05D003153 ORTHO05D003549 1.0e-09 65.9 49 61.2
PSO384G3022 Papaver somniferum HOM05D003153 ORTHO05D003549 1.0e-09 65.9 49 61.2
DCAR_015561 Daucus carota HOM05D003153 ORTHO05D003549 1.4e-09 65.5 44 61.4
CANSAT35G1164 Cannabis sativa HOM05D003153 ORTHO05D003549 2.3e-09 64.7 49 55.1
RcHm_v2.0_Chr4g0444761 Rosa chinensis HOM05D003153 ORTHO05D003549 2.3e-09 64.7 49 57.1
Hund08388 Selenicereus undatus HOM05D003153 ORTHO05D003549 6.7e-09 63.2 44 63.6
Aqoxy4G03206 Aquilegia oxysepala HOM05D003153 ORTHO05D003549 8.8e-09 62.8 48 58.3
Hund08389 Selenicereus undatus HOM05D003153 ORTHO05D003549 1.5e-08 62.0 45 57.8
Os08g0478200 Oryza sativa ssp. japonica HOM05D003153 ORTHO05D003549 2.6e-08 61.2 43 60.5
HPP92_000637 Vanilla planifolia HOM05D003153 ORTHO05D003549 3.3e-08 60.8 44 61.4
PSO063G2342 Papaver somniferum HOM05D003153 ORTHO05D003549 5.7e-08 60.1 51 56.9
MBI19_g11837_MAGBIO Magnolia biondii HOM05D003153 ORTHO05D003549 1.3e-07 58.9 49 51.0
Zm00001eb038370 Zea mays HOM05D003153 ORTHO05D003549 3.7e-07 57.4 45 57.8
CDE06G0464 Ceratophyllum demersum HOM05D003153 ORTHO05D003549 6.3e-07 56.6 49 51.0
Gohir.A13G068200 Gossypium hirsutum HOM05D003153 ORTHO05D003549 8.2e-07 56.2 41 61.0
Gohir.D07G023601 Gossypium hirsutum HOM05D003153 ORTHO05D003549 8.2e-07 56.2 41 63.4
CDE12G0268 Ceratophyllum demersum HOM05D003153 ORTHO05D003549 1.4e-06 55.5 49 49.0
SEGI_02420 Sequoiadendron giganteum HOM05D003153 ORTHO05D003549 7.0e-06 53.1 47 55.3


User provided reference genes

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