Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc03_g11790 Coffea canephora HOM05D006096 ORTHO05D007775 3.7e-79 298.1 149 100.0
Cc07_g14840 Coffea canephora HOM05D006096 ORTHO05D007775 1.3e-39 166.8 166 59.6
Nitab4.5_0004570g0020 Nicotiana tabacum HOM05D006096 ORTHO05D007775 3.0e-20 102.4 87 60.9
Peaxi162Scf00381g01013 Petunia axillaris HOM05D006096 ORTHO05D007775 1.9e-19 99.8 87 57.5
PGSC0003DMG400016160 Solanum tuberosum HOM05D006096 ORTHO05D007775 2.8e-18 95.9 86 58.1
Solyc11g009060.2 Solanum lycopersicum HOM05D006096 ORTHO05D007775 3.6e-18 95.5 86 58.1
Sopen11g004830 Solanum pennellii HOM05D006096 ORTHO05D007775 3.6e-18 95.5 86 58.1
CAN.G905.37 Capsicum annuum HOM05D006096 ORTHO05D007775 6.2e-18 94.7 86 58.1
Oeu033049.1 Olea europaea HOM05D006096 ORTHO05D007775 1.4e-17 93.6 87 55.2
vmacro18587 Vaccinium macrocarpon HOM05D006096 ORTHO05D007775 1.4e-17 93.6 87 52.9
CANSAT01G2346 Cannabis sativa HOM05D006096 ORTHO05D007775 6.9e-17 91.3 85 52.9
Dinv08841 Davidia involucrata HOM05D006096 ORTHO05D007775 1.2e-16 90.5 87 49.4
CSS0046442 Camellia sinensis var. sinensis HOM05D006096 ORTHO05D007775 2.6e-16 89.4 158 36.7
Ciclev10026196m.g Citrus clementina HOM05D006096 ORTHO05D007775 2.6e-16 89.4 155 38.7
Atru.chr3.1373 Acer truncatum HOM05D006096 ORTHO05D007775 4.5e-16 88.6 88 52.3
Actinidia28854 Actinidia chinensis HOM05D006096 ORTHO05D007775 5.8e-16 88.2 159 35.8
DCAR_014211 Daucus carota HOM05D006096 ORTHO05D007775 7.6e-16 87.8 86 52.3
ClCG07G017370 Citrullus lanatus HOM05D006096 ORTHO05D007775 1.7e-15 86.7 110 46.4
Sc16g0000180 Simmondsia chinensis HOM05D006096 ORTHO05D007775 1.7e-15 86.7 161 34.8
Prupe.6G191000 Prunus persica HOM05D006096 ORTHO05D007775 2.2e-15 86.3 167 37.1
Potri.005G073600 Populus trichocarpa HOM05D006096 ORTHO05D007775 2.9e-15 85.9 87 50.6
QL06p048506 Quercus lobata HOM05D006096 ORTHO05D007775 3.8e-15 85.5 87 50.6
Lsat_1_v5_gn_5_34320 Lactuca sativa HOM05D006096 ORTHO05D007775 4.9e-15 85.1 165 35.2
TAR625G1553 Trochodendron aralioides HOM05D006096 ORTHO05D007775 8.4e-15 84.3 87 48.3
Glyma.18G015800 Glycine max HOM05D006096 ORTHO05D007775 1.4e-14 83.6 87 49.4
Glyma.11G241200 Glycine max HOM05D006096 ORTHO05D007775 1.9e-14 83.2 88 51.1
Lalb_Chr19g0127391 Lupinus albus HOM05D006096 ORTHO05D007775 3.2e-14 82.4 86 53.5
SGA_v2.0_scaffold111G31503 Striga asiatica HOM05D006096 ORTHO05D007775 3.2e-14 82.4 163 33.7
Lj6g0005810 Lotus japonicus HOM05D006096 ORTHO05D007775 4.2e-14 82.0 88 50.0
Nitab4.5_0000743g0130 Nicotiana tabacum HOM05D006096 ORTHO05D007775 4.2e-14 82.0 58 70.7
Phvul.001G253200 Phaseolus vulgaris HOM05D006096 ORTHO05D007775 4.2e-14 82.0 87 48.3
arahy.Tifrunner.gnm1.ann1.DD3ZZY Arachis hypogaea HOM05D006096 ORTHO05D007775 5.4e-14 81.6 87 49.4
Duzib187G1253 Durio zibethinus HOM05D006096 ORTHO05D007775 5.4e-14 81.6 165 35.2
Manes.13G095500 Manihot esculenta HOM05D006096 ORTHO05D007775 5.4e-14 81.6 87 48.3
arahy.Tifrunner.gnm1.ann1.C4UPUA Arachis hypogaea HOM05D006096 ORTHO05D007775 7.1e-14 81.3 89 52.8
COL.COLO4_27275 Corchorus olitorius HOM05D006096 ORTHO05D007775 9.3e-14 80.9 86 48.8
CiPaw.03G143900 Carya illinoinensis HOM05D006096 ORTHO05D007775 1.2e-13 80.5 87 48.3
Nn1g05418 Nelumbo nucifera HOM05D006096 ORTHO05D007775 1.6e-13 80.1 90 46.7
VMungo1383G2853 Vigna mungo HOM05D006096 ORTHO05D007775 2.1e-13 79.7 87 47.1
CARHR202970 Cardamine hirsuta HOM05D006096 ORTHO05D007775 2.7e-13 79.3 86 51.2
AUR62001986 Chenopodium quinoa HOM05D006096 ORTHO05D007775 2.7e-13 79.3 86 51.2
Migut.H02345 Erythranthe guttata HOM05D006096 ORTHO05D007775 3.5e-13 79.0 86 50.0
QL06p048476 Quercus lobata HOM05D006096 ORTHO05D007775 3.5e-13 79.0 87 50.6
EL10Ac6g15136 Beta vulgaris HOM05D006096 ORTHO05D007775 4.6e-13 78.6 87 50.6
Carub.0006s0879 Capsella rubella HOM05D006096 ORTHO05D007775 6.0e-13 78.2 86 47.7
Thecc.01G097900 Theobroma cacao HOM05D006096 ORTHO05D007775 6.0e-13 78.2 172 33.7
Eucgr.H04751 Eucalyptus grandis HOM05D006096 ORTHO05D007775 7.9e-13 77.8 89 49.4
BcaC04g19312 Brassica carinata HOM05D006096 ORTHO05D007775 1.0e-12 77.4 86 48.8
BolC9t59480H Brassica oleracea HOM05D006096 ORTHO05D007775 1.0e-12 77.4 86 48.8
Cfa002624 Carpinus fangiana HOM05D006096 ORTHO05D007775 1.0e-12 77.4 86 48.8
Cpa.g.sc55.89 Carica papaya HOM05D006096 ORTHO05D007775 1.3e-12 77.0 86 45.3
Thhalv10013818m.g Eutrema salsugineum HOM05D006096 ORTHO05D007775 1.3e-12 77.0 86 47.7
TWI53G1189 Tripterygium wilfordii HOM05D006096 ORTHO05D007775 1.3e-12 77.0 86 48.8
AT5G10320 Arabidopsis thaliana HOM05D006096 ORTHO05D007775 1.8e-12 76.6 86 46.5
Aa31LG3G16830 Aethionema arabicum HOM05D006096 ORTHO05D007775 2.3e-12 76.3 86 48.8
FAN23G0863 Fragaria x ananassa HOM05D006096 ORTHO05D007775 2.3e-12 76.3 86 46.5
Sed0027583 Sechium edule HOM05D006096 ORTHO05D007775 2.3e-12 76.3 86 47.7
BcaB08g37116 Brassica carinata HOM05D006096 ORTHO05D007775 3.0e-12 75.9 91 44.0
BcaC04g19315 Brassica carinata HOM05D006096 ORTHO05D007775 3.0e-12 75.9 91 44.0
Psat5g090600 Pisum sativum HOM05D006096 ORTHO05D007775 3.9e-12 75.5 86 47.7
A10p27260 Brassica napus HOM05D006096 ORTHO05D007775 5.1e-12 75.1 81 46.9
C09p67070 Brassica napus HOM05D006096 ORTHO05D007775 5.1e-12 75.1 86 48.8
BraA10t44776Z Brassica rapa HOM05D006096 ORTHO05D007775 5.1e-12 75.1 81 46.9
Gohir.D10G103900 Gossypium hirsutum HOM05D006096 ORTHO05D007775 5.1e-12 75.1 168 33.9
MBI02_g02177_MAGBIO Magnolia biondii HOM05D006096 ORTHO05D007775 5.1e-12 75.1 93 46.2
AL6G20820 Arabidopsis lyrata HOM05D006096 ORTHO05D007775 6.7e-12 74.7 86 46.5
Gorai.011G113400 Gossypium raimondii HOM05D006096 ORTHO05D007775 6.7e-12 74.7 168 33.3
Medtr3g087010 Medicago truncatula HOM05D006096 ORTHO05D007775 6.7e-12 74.7 86 45.3
RcHm_v2.0_Chr2g0112761 Rosa chinensis HOM05D006096 ORTHO05D007775 6.7e-12 74.7 86 44.2
Gohir.A10G085100 Gossypium hirsutum HOM05D006096 ORTHO05D007775 8.7e-12 74.3 168 33.3
PSO210G0897 Papaver somniferum HOM05D006096 ORTHO05D007775 8.7e-12 74.3 88 45.5
PSO447G0355 Papaver somniferum HOM05D006096 ORTHO05D007775 1.5e-11 73.6 88 45.5
FvH4_1g20510 Fragaria vesca HOM05D006096 ORTHO05D007775 1.9e-11 73.2 86 45.3
Sp6g33110 Schrenkiella parvula HOM05D006096 ORTHO05D007775 1.9e-11 73.2 86 46.5
TPR.G15994 Trifolium pratense HOM05D006096 ORTHO05D007775 1.9e-11 73.2 86 45.3
MD01G1033500 Malus domestica HOM05D006096 ORTHO05D007775 4.3e-11 72.0 165 33.9
HanXRQChr15g0477621 Helianthus annuus HOM05D006096 ORTHO05D007775 5.6e-11 71.6 47 70.2
CsaV3_4G004600 Cucumis sativus L. HOM05D006096 ORTHO05D007775 9.6e-11 70.9 40 77.5
CsaV3_UNG122970 Cucumis sativus L. HOM05D006096 ORTHO05D007775 9.6e-11 70.9 40 77.5
CARHR202980 Cardamine hirsuta HOM05D006096 ORTHO05D007775 1.3e-10 70.5 86 45.3
ECA246G2908 Erigeron canadensis HOM05D006096 ORTHO05D007775 1.6e-10 70.1 48 64.6
ATR0684G225 Amborella trichopoda HOM05D006096 ORTHO05D007775 3.7e-10 68.9 94 41.5
HanXRQChr02g0032011 Helianthus annuus HOM05D006096 ORTHO05D007775 4.8e-10 68.6 44 70.5
Hund13600 Selenicereus undatus HOM05D006096 ORTHO05D007775 1.8e-09 66.6 122 36.9
Aqoxy6G00746 Aquilegia oxysepala HOM05D006096 ORTHO05D007775 3.1e-09 65.9 40 65.0
Zm00001eb081250 Zea mays HOM05D006096 ORTHO05D007775 3.1e-09 65.9 38 76.3
SEGI_01830 Sequoiadendron giganteum HOM05D006096 ORTHO05D007775 5.3e-09 65.1 83 47.0
HPP92_011214 Vanilla planifolia HOM05D006096 ORTHO05D007775 1.5e-08 63.5 39 76.9
Os04g0451100 Oryza sativa ssp. japonica HOM05D006096 ORTHO05D007775 3.4e-08 62.4 68 50.0
unitig_899.g14550 Utricularia gibba HOM05D006096 ORTHO05D007775 3.4e-08 62.4 121 36.4
CARHR202960 Cardamine hirsuta HOM05D006096 ORTHO05D007775 4.5e-08 62.0 74 45.9
Cc08_g12120 Coffea canephora HOM05D005131 ORTHO05D003188 1.3e-07 60.5 40 70.0
Pp3c3_14090 Physcomitrium patens HOM05D006096 ORTHO05D007775 2.2e-07 59.7 38 68.4
CBR_g26374 Chara braunii HOM05D006096 ORTHO05D007775 2.9e-07 59.3 77 39.0
Mapoly0077s0016 Marchantia polymorpha HOM05D006096 ORTHO05D007775 1.1e-06 57.4 66 45.5
MELO3C017606.2 Cucumis melo HOM05D006096 ORTHO05D007775 2.4e-06 56.2 32 75.0
AagrBONN_evm.TU.Sc2ySwM_344.1220 Anthoceros agrestis HOM05D006096 ORTHO05D007775 7.1e-06 54.7 39 61.5


User provided reference genes

Program Settings