Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc03_g11440 Coffea canephora HOM05D004076 ORTHO05D004606 7.8e-180 633.6 314 100.0
Dinv44195 Davidia involucrata HOM05D004076 ORTHO05D004606 2.3e-91 339.7 303 58.7
Hma1.2p1_0639F.1_g194000 Hydrangea macrophylla HOM05D004076 ORTHO05D004606 6.8e-91 338.2 304 58.9
Cfa015154 Carpinus fangiana HOM05D004076 ORTHO05D004606 4.9e-89 332.0 306 57.2
TAR633G1822 Trochodendron aralioides HOM05D004076 ORTHO05D004606 1.1e-88 330.9 305 56.1
GSVIVG01010749001 Vitis vinifera HOM05D004076 ORTHO05D004606 1.2e-87 327.4 302 59.6
Lj3A198G30 Lonicera japonica HOM05D004076 ORTHO05D004606 2.0e-87 326.6 304 56.6
Prupe.1G191700 Prunus persica HOM05D004076 ORTHO05D004606 3.5e-87 325.9 313 56.5
CiPaw.01G101100 Carya illinoinensis HOM05D004076 ORTHO05D004606 1.5e-85 320.5 306 54.2
Peaxi162Scf00297g01124 Petunia axillaris HOM05D004076 ORTHO05D004606 3.3e-85 319.3 306 54.6
Actinidia39854 Actinidia chinensis HOM05D004076 ORTHO05D004606 7.3e-85 318.2 304 56.9
QL10p048538 Quercus lobata HOM05D004076 ORTHO05D004606 6.2e-84 315.1 307 56.0
MD04G1007700 Malus domestica HOM05D004076 ORTHO05D004606 2.3e-83 313.2 307 55.7
Atru.chr3.1528 Acer truncatum HOM05D004076 ORTHO05D004606 3.1e-83 312.8 305 53.4
Actinidia11304 Actinidia chinensis HOM05D004076 ORTHO05D004606 3.1e-83 312.8 305 55.4
Oeu032957.2 Olea europaea HOM05D004076 ORTHO05D004606 3.1e-83 312.8 302 53.6
RcHm_v2.0_Chr4g0407011 Rosa chinensis HOM05D004076 ORTHO05D004606 4.0e-83 312.4 309 55.3
Nitab4.5_0000313g0050 Nicotiana tabacum HOM05D004076 ORTHO05D004606 4.4e-82 308.9 299 55.9
Medtr2g098830 Medicago truncatula HOM05D004076 ORTHO05D004606 7.5e-82 308.1 323 50.5
Rhsim02G0076700 Rhododendron simsii HOM05D004076 ORTHO05D004606 3.7e-81 305.8 334 50.0
Manes.04G041450 Manihot esculenta HOM05D004076 ORTHO05D004606 1.1e-80 304.3 305 54.4
PGR031G3172 Punica granatum HOM05D004076 ORTHO05D004606 1.1e-80 304.3 300 52.3
Sopen07g034480 Solanum pennellii HOM05D004076 ORTHO05D004606 1.1e-80 304.3 301 54.2
TWI63G0993 Tripterygium wilfordii HOM05D004076 ORTHO05D004606 1.4e-80 303.9 309 52.8
FAN07G2191 Fragaria x ananassa HOM05D004076 ORTHO05D004606 1.9e-80 303.5 313 51.8
TPR.G35423 Trifolium pratense HOM05D004076 ORTHO05D004606 4.1e-80 302.4 307 52.1
FvH4_4g10700 Fragaria vesca HOM05D004076 ORTHO05D004606 5.4e-80 302.0 313 53.4
Ca_01262_v3 Cicer arietinum L. HOM05D004076 ORTHO05D004606 9.2e-80 301.2 325 49.5
Ca_20781_v3 Cicer arietinum L. HOM05D004076 ORTHO05D004606 9.2e-80 301.2 307 50.8
Medtr4g067090 Medicago truncatula HOM05D004076 ORTHO05D004606 4.6e-79 298.9 308 50.6
Duzib212G0448 Durio zibethinus HOM05D004076 ORTHO05D004606 5.1e-78 295.4 308 51.3
Nn1g09697 Nelumbo nucifera HOM05D004076 ORTHO05D004606 6.6e-78 295.0 293 53.2
MSTRG.28249 Avicennia marina HOM05D004076 ORTHO05D004606 8.6e-78 294.7 302 52.6
Lalb_Chr01g0003201 Lupinus albus HOM05D004076 ORTHO05D004606 5.6e-77 292.0 305 50.8
Psat7g213720 Pisum sativum HOM05D004076 ORTHO05D004606 5.6e-77 292.0 307 49.5
arahy.Tifrunner.gnm1.ann1.KU5ADZ Arachis hypogaea HOM05D004076 ORTHO05D004606 9.5e-77 291.2 305 48.5
Psat1g007120 Pisum sativum HOM05D004076 ORTHO05D004606 1.6e-76 290.4 307 49.5
Thecc.04G186100 Theobroma cacao HOM05D004076 ORTHO05D004606 2.1e-76 290.0 327 47.7
Lj3g0002927 Lotus japonicus HOM05D004076 ORTHO05D004606 2.8e-76 289.7 319 48.6
FAN17G1176 Fragaria x ananassa HOM05D004076 ORTHO05D004606 3.6e-76 289.3 293 53.6
Lalb_Chr14g0372441 Lupinus albus HOM05D004076 ORTHO05D004606 4.7e-76 288.9 306 50.7
Sed0018268 Sechium edule HOM05D004076 ORTHO05D004606 4.7e-76 288.9 301 50.8
arahy.Tifrunner.gnm1.ann1.68X0LC Arachis hypogaea HOM05D004076 ORTHO05D004606 1.4e-75 287.3 305 48.2
Potri.007G127800 Populus trichocarpa HOM05D004076 ORTHO05D004606 5.2e-75 285.4 308 51.9
Haze_01517 Corylus avellana HOM05D004076 ORTHO05D004606 6.8e-75 285.0 270 56.3
MELO3C011646.2 Cucumis melo HOM05D004076 ORTHO05D004606 1.5e-74 283.9 304 49.0
TPR.G34235 Trifolium pratense HOM05D004076 ORTHO05D004606 1.5e-74 283.9 308 48.1
arahy.Tifrunner.gnm1.ann1.ZR8I8Y Arachis hypogaea HOM05D004076 ORTHO05D004606 2.0e-74 283.5 298 48.7
CANSAT78G1401 Cannabis sativa HOM05D004076 ORTHO05D004606 3.4e-74 282.7 303 52.5
SalBow3G0974 Salvia bowleyana HOM05D004076 ORTHO05D004606 3.4e-74 282.7 298 49.7
CsaV3_6G003850 Cucumis sativus L. HOM05D004076 ORTHO05D004606 5.8e-74 282.0 304 49.7
Glyma.15G030500 Glycine max HOM05D004076 ORTHO05D004606 5.8e-74 282.0 306 51.0
Gohir.D09G203332 Gossypium hirsutum HOM05D004076 ORTHO05D004606 2.2e-73 280.0 307 50.5
Gorai.006G227200 Gossypium raimondii HOM05D004076 ORTHO05D004606 2.2e-73 280.0 307 50.5
arahy.Tifrunner.gnm1.ann1.33ZKBH Arachis hypogaea HOM05D004076 ORTHO05D004606 2.9e-73 279.6 298 48.7
Ciclev10020610m.g Citrus clementina HOM05D004076 ORTHO05D004606 2.9e-73 279.6 307 51.1
Migut.B01848 Erythranthe guttata HOM05D004076 ORTHO05D004606 1.4e-72 277.3 299 49.8
Gohir.A09G209900 Gossypium hirsutum HOM05D004076 ORTHO05D004606 1.9e-72 276.9 307 49.8
MBI08_g23493_MAGBIO Magnolia biondii HOM05D004076 ORTHO05D004606 3.2e-72 276.2 311 47.3
Ciclev10020801m.g Citrus clementina HOM05D004076 ORTHO05D004606 5.4e-72 275.4 307 51.1
Sabra07G0104100 Salix brachista HOM05D004076 ORTHO05D004606 7.1e-72 275.0 308 50.3
EL10Ac3g05923 Beta vulgaris HOM05D004076 ORTHO05D004606 2.1e-71 273.5 298 51.3
Eucgr.G00183 Eucalyptus grandis HOM05D004076 ORTHO05D004606 1.7e-70 270.4 317 48.6
Eucgr.H00375 Eucalyptus grandis HOM05D004076 ORTHO05D004606 6.6e-70 268.5 313 48.6
Sabra17G0020100 Salix brachista HOM05D004076 ORTHO05D004606 6.6e-70 268.5 308 48.1
SalBow5G1086 Salvia bowleyana HOM05D004076 ORTHO05D004606 6.6e-70 268.5 302 49.0
VMungo1127G1790 Vigna mungo HOM05D004076 ORTHO05D004606 2.5e-69 266.5 331 43.8
DCAR_031879 Daucus carota HOM05D004076 ORTHO05D004606 4.3e-69 265.8 308 49.4
SGA_v2.0_scaffold24G10696 Striga asiatica HOM05D004076 ORTHO05D004606 4.3e-69 265.8 311 46.3
Peaxi162Scf00297g01121 Petunia axillaris HOM05D004076 ORTHO05D004606 1.6e-68 263.8 302 49.7
AUR62002294 Chenopodium quinoa HOM05D004076 ORTHO05D004606 4.7e-68 262.3 298 47.7
Eucgr.G00179 Eucalyptus grandis HOM05D004076 ORTHO05D004606 4.7e-68 262.3 325 46.5
Medtr2g098710 Medicago truncatula HOM05D004076 ORTHO05D004606 1.4e-67 260.8 304 48.0
FAN12G1510 Fragaria x ananassa HOM05D004076 ORTHO05D004606 4.0e-67 259.2 268 53.7
Medtr2g098720 Medicago truncatula HOM05D004076 ORTHO05D004606 4.0e-67 259.2 304 48.0
Medtr2g098730 Medicago truncatula HOM05D004076 ORTHO05D004606 4.0e-67 259.2 305 47.5
ECA240G0221 Erigeron canadensis HOM05D004076 ORTHO05D004606 5.2e-67 258.8 301 50.2
Phvul.011G055000 Phaseolus vulgaris HOM05D004076 ORTHO05D004606 5.2e-67 258.8 331 42.9
BcaC07g42099 Brassica carinata HOM05D004076 ORTHO05D004606 6.8e-67 258.5 300 45.7
FAN12G0055 Fragaria x ananassa HOM05D004076 ORTHO05D004606 1.5e-66 257.3 268 53.4
Thhalv10007042m.g Eutrema salsugineum HOM05D004076 ORTHO05D004606 2.0e-66 256.9 300 44.3
DCAR_027539 Daucus carota HOM05D004076 ORTHO05D004606 9.9e-66 254.6 301 45.2
Aqoxy7G02134 Aquilegia oxysepala HOM05D004076 ORTHO05D004606 1.7e-65 253.8 303 46.2
Sopen03g040670 Solanum pennellii HOM05D004076 ORTHO05D004606 2.2e-65 253.4 300 47.0
Aa31LG1G8350 Aethionema arabicum HOM05D004076 ORTHO05D004606 6.4e-65 251.9 303 45.2
Aqoxy7G02132 Aquilegia oxysepala HOM05D004076 ORTHO05D004606 6.4e-65 251.9 294 48.6
Solyc03g121850.3 Solanum lycopersicum HOM05D004076 ORTHO05D004606 8.4e-65 251.5 300 46.7
CARHR005480 Cardamine hirsuta HOM05D004076 ORTHO05D004606 1.1e-64 251.1 304 43.8
THA.LOC104826195 Tarenaya hassleriana HOM05D004076 ORTHO05D004606 3.2e-64 249.6 301 43.5
Lsat_1_v5_gn_3_110821 Lactuca sativa HOM05D004076 ORTHO05D004606 5.4e-64 248.8 304 47.7
HanXRQChr03g0090111 Helianthus annuus HOM05D004076 ORTHO05D004606 7.1e-64 248.4 316 47.2
Lj6A56T29 Lonicera japonica HOM05D004076 ORTHO05D004606 7.1e-64 248.4 271 49.1
Aqoxy7G03601 Aquilegia oxysepala HOM05D004076 ORTHO05D004606 9.3e-64 248.1 300 47.0
AT1G05950 Arabidopsis thaliana HOM05D004076 ORTHO05D004606 1.0e-62 244.6 297 44.1
Carub.0001s0531 Capsella rubella HOM05D004076 ORTHO05D004606 1.3e-62 244.2 300 44.3
BolC8t52680H Brassica oleracea HOM05D004076 ORTHO05D004606 1.7e-62 243.8 296 42.2
ClCG08G004480 Citrullus lanatus HOM05D004076 ORTHO05D004606 1.7e-62 243.8 432 35.4
BraA09t42056Z Brassica rapa HOM05D004076 ORTHO05D004606 5.1e-62 242.3 301 43.2
Lj3g0000298 Lotus japonicus HOM05D004076 ORTHO05D004606 5.1e-62 242.3 280 47.1
Eucgr.G00184 Eucalyptus grandis HOM05D004076 ORTHO05D004606 6.6e-62 241.9 302 46.0
A09p67230 Brassica napus HOM05D004076 ORTHO05D004606 8.7e-62 241.5 301 42.9
AL1G15900 Arabidopsis lyrata HOM05D004076 ORTHO05D004606 1.5e-61 240.7 293 44.0
C08p51520 Brassica napus HOM05D004076 ORTHO05D004606 1.5e-61 240.7 301 43.2
ATR0686G221 Amborella trichopoda HOM05D004076 ORTHO05D004606 3.3e-61 239.6 297 43.8
COL.COLO4_33468 Corchorus olitorius HOM05D004076 ORTHO05D004606 1.8e-59 233.8 306 43.8
Nitab4.5_0009641g0050 Nicotiana tabacum HOM05D004076 ORTHO05D004606 2.4e-59 233.4 268 49.6
PSO832G3772 Papaver somniferum HOM05D004076 ORTHO05D004606 3.1e-59 233.0 325 43.1
Ciclev10023338m.g Citrus clementina HOM05D004076 ORTHO05D004606 4.0e-59 232.6 262 49.6
Medtr0002s1280 Medicago truncatula HOM05D004076 ORTHO05D004606 1.2e-58 231.1 302 43.0
PGSC0003DMG400002575 Solanum tuberosum HOM05D004076 ORTHO05D004606 3.8e-57 226.1 264 48.9
Glyma.12G053033 Glycine max HOM05D004076 ORTHO05D004606 4.9e-57 225.7 275 46.5
Eucgr.G00188 Eucalyptus grandis HOM05D004076 ORTHO05D004606 1.1e-56 224.6 285 45.6
Migut.N01559 Erythranthe guttata HOM05D004076 ORTHO05D004606 4.2e-56 222.6 296 40.9
Nitab4.5_0002475g0040 Nicotiana tabacum HOM05D004076 ORTHO05D004606 9.3e-56 221.5 304 43.4
Nitab4.5_0005003g0040 Nicotiana tabacum HOM05D004076 ORTHO05D004606 9.3e-56 221.5 268 46.3
Medtr2g098770 Medicago truncatula HOM05D004076 ORTHO05D004606 1.0e-46 191.4 264 42.8
Eucgr.G00171 Eucalyptus grandis HOM05D004076 ORTHO05D004606 1.8e-46 190.7 221 48.0
Sc11g0003780 Simmondsia chinensis HOM05D004076 ORTHO05D004606 1.1e-45 188.0 209 48.8
Sp1g04770 Schrenkiella parvula HOM05D004076 ORTHO05D004606 1.6e-44 184.1 225 44.9
Zm00001eb318340 Zea mays HOM05D004076 ORTHO05D004606 8.4e-41 171.8 302 37.4
Cpa.g.sc9.266 Carica papaya HOM05D004076 ORTHO05D004606 5.5e-40 169.1 183 53.0
Ciclev10024150m.g Citrus clementina HOM05D004076 ORTHO05D004606 5.7e-37 159.1 186 48.9
Ciclev10024444m.g Citrus clementina HOM05D004076 ORTHO05D004606 5.7e-37 159.1 186 48.9
CDE08G1584 Ceratophyllum demersum HOM05D004076 ORTHO05D004606 6.7e-30 135.6 253 35.6
SEGI_36759 Sequoiadendron giganteum HOM05D004076 ORTHO05D004606 1.8e-27 127.5 182 39.6
Os09g0514500 Oryza sativa ssp. japonica HOM05D004076 ORTHO05D004606 1.0e-25 121.7 172 43.6
Sed0002856 Sechium edule HOM05D004076 ORTHO05D004606 7.2e-24 115.5 215 36.3
Lj8A15T44 Lonicera japonica HOM05D004076 ORTHO05D004606 1.2e-23 114.8 89 62.9
COL.COLO4_20907 Corchorus olitorius HOM05D004076 ORTHO05D004606 2.1e-23 114.0 138 45.7
Lj3g0024562 Lotus japonicus HOM05D004076 ORTHO05D004606 1.0e-22 111.7 308 31.2
Lj3g0014411 Lotus japonicus HOM05D004076 ORTHO05D004606 8.8e-22 108.6 226 34.1
Glyma.13G343800 Glycine max HOM05D004076 ORTHO05D004606 5.5e-16 89.4 98 46.9
SHI23539 Sapria himalayana HOM05D004076 ORTHO05D004606 8.8e-14 82.0 114 42.1
Glyma.11G128400 Glycine max HOM05D004076 ORTHO05D004606 6.5e-09 65.9 59 50.8


User provided reference genes

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