Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc03_g11280 Coffea canephora HOM05D000070 ORTHO05D033897 8.3e-70 266.9 136 100.0
Cc03_g11290 Coffea canephora HOM05D000070 ORTHO05D006344 9.5e-66 253.4 136 95.6
Cc11_g11890 Coffea canephora HOM05D000070 ORTHO05D006344 1.3e-54 216.5 114 96.5
Lj6C778T15 Lonicera japonica HOM05D000070 ORTHO05D006344 6.4e-38 161.0 136 59.6
CSS0018471 Camellia sinensis var. sinensis HOM05D000070 ORTHO05D006344 1.4e-37 159.8 136 60.3
Peaxi162Scf00175g00320 Petunia axillaris HOM05D000070 ORTHO05D006344 5.5e-37 157.9 136 59.6
CSS0038248 Camellia sinensis var. sinensis HOM05D000070 ORTHO05D033897 2.7e-36 155.6 131 60.3
MSTRG.13451 Avicennia marina HOM05D000070 ORTHO05D006344 3.5e-36 155.2 120 65.0
Nitab4.5_0007061g0080 Nicotiana tabacum HOM05D000070 ORTHO05D006344 7.9e-36 154.1 136 57.4
CSS0009054 Camellia sinensis var. sinensis HOM05D000070 ORTHO05D033897 2.3e-35 152.5 131 59.5
vmacro01067 Vaccinium macrocarpon HOM05D000070 ORTHO05D006344 2.3e-35 152.5 136 60.3
Nitab4.5_0000231g0160 Nicotiana tabacum HOM05D000070 ORTHO05D006344 3.9e-35 151.8 136 58.1
Cc00_g25790 Coffea canephora HOM05D000070 ORTHO05D006344 8.7e-35 150.6 75 100.0
vmacro14060 Vaccinium macrocarpon HOM05D000070 ORTHO05D006344 4.3e-34 148.3 136 60.3
CAN.G707.5 Capsicum annuum HOM05D000070 ORTHO05D006344 2.8e-33 145.6 140 57.1
PGSC0003DMG400028368 Solanum tuberosum HOM05D000070 ORTHO05D006344 1.8e-32 142.9 137 56.2
Solyc05g012190.3 Solanum lycopersicum HOM05D000070 ORTHO05D006344 2.4e-32 142.5 137 56.2
QL03p074004 Quercus lobata HOM05D000070 ORTHO05D006344 6.9e-32 141.0 142 55.6
QL03p074454 Quercus lobata HOM05D000070 ORTHO05D006344 6.9e-32 141.0 142 55.6
Sopen05g007020 Solanum pennellii HOM05D000070 ORTHO05D006344 6.9e-32 141.0 137 56.2
Ciclev10031132m.g Citrus clementina HOM05D000070 ORTHO05D006344 2.0e-31 139.4 136 54.4
QL03p074523 Quercus lobata HOM05D000070 ORTHO05D006344 7.6e-31 137.5 139 55.4
SalBow2G1167 Salvia bowleyana HOM05D000113 ORTHO05D006344 1.0e-30 137.1 119 57.1
QL03p073969 Quercus lobata HOM05D000070 ORTHO05D006344 1.3e-30 136.7 141 53.9
Nn4g23451 Nelumbo nucifera HOM05D000070 ORTHO05D006344 2.9e-30 135.6 136 53.7
Thecc.02G329400 Theobroma cacao HOM05D000070 ORTHO05D006344 1.9e-29 132.9 136 54.4
COL.COLO4_27870 Corchorus olitorius HOM05D000070 ORTHO05D006344 2.5e-29 132.5 122 59.8
TAR371G0409 Trochodendron aralioides HOM05D000070 ORTHO05D006344 5.5e-29 131.3 137 54.0
Potri.001G128700 Populus trichocarpa HOM05D000070 ORTHO05D006344 7.1e-29 131.0 123 57.7
QL03p073983 Quercus lobata HOM05D000070 ORTHO05D006344 7.1e-29 131.0 138 52.2
CSS0028505 Camellia sinensis var. sinensis HOM05D000070 ORTHO05D000722 9.3e-29 130.6 128 57.8
MELO3C012157.2 Cucumis melo HOM05D000070 ORTHO05D006344 9.3e-29 130.6 139 51.8
Duzib251G0829 Durio zibethinus HOM05D000070 ORTHO05D006344 9.3e-29 130.6 142 51.4
CANSAT11G2528 Cannabis sativa HOM05D000070 ORTHO05D006344 1.2e-28 130.2 136 52.9
Rhsim02G0238200 Rhododendron simsii HOM05D000070 ORTHO05D006344 1.2e-28 130.2 82 80.5
ClCG05G023650 Citrullus lanatus HOM05D000070 ORTHO05D006344 1.6e-28 129.8 136 51.5
Rhsim02G0237900 Rhododendron simsii HOM05D000070 ORTHO05D006344 1.6e-28 129.8 82 80.5
Sabra01G0099000 Salix brachista HOM05D000070 ORTHO05D006344 2.1e-28 129.4 123 56.9
Atru.chr11.1617 Acer truncatum HOM05D000070 ORTHO05D006344 2.7e-28 129.0 138 50.0
Manes.04G050400 Manihot esculenta HOM05D000070 ORTHO05D006344 3.5e-28 128.6 125 55.2
CsaV3_5G033370 Cucumis sativus L. HOM05D000070 ORTHO05D006344 4.6e-28 128.3 139 51.8
EL10Ac6g15010 Beta vulgaris HOM05D000070 ORTHO05D006344 1.0e-27 127.1 135 51.9
Ah.03g138860 Amaranthus hybridus HOM05D000070 ORTHO05D006344 2.3e-27 125.9 129 55.0
CiPaw.06G092600 Carya illinoinensis HOM05D000070 ORTHO05D006344 2.3e-27 125.9 138 52.2
GSVIVG01034378001 Vitis vinifera HOM05D000070 ORTHO05D000722 2.3e-27 125.9 123 55.3
Migut.J01072 Erythranthe guttata HOM05D000070 ORTHO05D006344 3.9e-27 125.2 124 51.6
DCAR_030045 Daucus carota HOM05D000070 ORTHO05D006344 5.1e-27 124.8 137 52.6
Lsat_1_v5_gn_4_11741 Lactuca sativa HOM05D000070 ORTHO05D006344 5.1e-27 124.8 142 49.3
Hund05835 Selenicereus undatus HOM05D000070 ORTHO05D006344 5.1e-27 124.8 121 53.7
Aqoxy2G01115 Aquilegia oxysepala HOM05D000070 ORTHO05D006344 6.7e-27 124.4 76 80.3
AUR62007907 Chenopodium quinoa HOM05D000070 ORTHO05D006344 8.7e-27 124.0 136 51.5
Gohir.D07G006600 Gossypium hirsutum HOM05D000070 ORTHO05D006344 1.5e-26 123.2 120 56.7
Gorai.001G006200 Gossypium raimondii HOM05D000070 ORTHO05D006344 1.9e-26 122.9 120 55.8
Gohir.A07G005400 Gossypium hirsutum HOM05D000070 ORTHO05D006344 2.5e-26 122.5 120 55.8
Aqoxy1G00608 Aquilegia oxysepala HOM05D000070 ORTHO05D006344 3.3e-26 122.1 136 54.4
AUR62003090 Chenopodium quinoa HOM05D000070 ORTHO05D006344 3.3e-26 122.1 136 50.0
Cpa.g.sc1.136 Carica papaya HOM05D000070 ORTHO05D006344 4.8e-25 118.2 137 48.9
TWI31G0249 Tripterygium wilfordii HOM05D000070 ORTHO05D006344 4.8e-25 118.2 120 54.2
TWI31G0934 Tripterygium wilfordii HOM05D000070 ORTHO05D006344 4.8e-25 118.2 120 54.2
THA.LOC104801824 Tarenaya hassleriana HOM05D000070 ORTHO05D006344 6.3e-25 117.9 134 48.5
Sed0010273 Sechium edule HOM05D000070 ORTHO05D006344 8.2e-25 117.5 136 48.5
SGA_v2.0_scaffold257G45707 Striga asiatica HOM05D000070 ORTHO05D006344 8.2e-25 117.5 120 51.7
Carub.0005s0280 Capsella rubella HOM05D000070 ORTHO05D006344 1.4e-24 116.7 136 45.6
TAR365G1030 Trochodendron aralioides HOM05D000070 ORTHO05D006344 3.1e-24 115.5 99 60.6
arahy.Tifrunner.gnm1.ann1.9AW2B2 Arachis hypogaea HOM05D000070 ORTHO05D006344 5.3e-24 114.8 129 50.4
Haze_11898 Corylus avellana HOM05D000070 ORTHO05D006344 5.3e-24 114.8 110 57.3
Glyma.02G118800 Glycine max HOM05D000070 ORTHO05D006344 5.3e-24 114.8 74 75.7
arahy.Tifrunner.gnm1.ann1.Z90ZKN Arachis hypogaea HOM05D000070 ORTHO05D006344 9.0e-24 114.0 132 50.0
Thhalv10003859m.g Eutrema salsugineum HOM05D000070 ORTHO05D006344 9.0e-24 114.0 136 45.6
PSO017G7094 Papaver somniferum HOM05D000070 ORTHO05D006344 9.0e-24 114.0 122 52.5
Lalb_Chr17g0341241 Lupinus albus HOM05D000070 ORTHO05D006344 1.2e-23 113.6 125 50.4
Cfa008871 Carpinus fangiana HOM05D000070 ORTHO05D006344 1.5e-23 113.2 111 55.0
HanXRQChr17g0568381 Helianthus annuus HOM05D000070 ORTHO05D006344 1.5e-23 113.2 132 47.7
PSO478G0742 Papaver somniferum HOM05D000070 ORTHO05D006344 2.6e-23 112.5 122 51.6
PSO478G2435 Papaver somniferum HOM05D000070 ORTHO05D006344 2.6e-23 112.5 122 51.6
Lj1g0014852 Lotus japonicus HOM05D000070 ORTHO05D006344 4.5e-23 111.7 121 52.9
Phvul.003G041700 Phaseolus vulgaris HOM05D000070 ORTHO05D006344 4.5e-23 111.7 127 51.2
TAR371G0020 Trochodendron aralioides HOM05D000070 ORTHO05D006344 4.5e-23 111.7 99 60.6
Prupe.1G288400 Prunus persica HOM05D000070 ORTHO05D006344 5.9e-23 111.3 72 73.6
ECA234G0905 Erigeron canadensis HOM05D000070 ORTHO05D006344 1.0e-22 110.5 95 60.0
Aa31LG2G7010 Aethionema arabicum HOM05D005523 ORTHO05D007089 1.3e-22 110.2 130 46.9
VMungo1215G2913 Vigna mungo HOM05D000070 ORTHO05D006344 1.7e-22 109.8 86 65.1
Actinidia33245 Actinidia chinensis HOM05D002141 ORTHO05D002119 2.2e-22 109.4 72 76.4
Ca_08367_v3 Cicer arietinum L. HOM05D000070 ORTHO05D006344 2.9e-22 109.0 74 70.3
MD16G1060100 Malus domestica HOM05D000070 ORTHO05D006344 3.8e-22 108.6 72 70.8
PGR119G0539 Punica granatum HOM05D000070 ORTHO05D006344 6.5e-22 107.8 142 44.4
Sp2g14350 Schrenkiella parvula HOM05D000070 ORTHO05D006344 1.4e-21 106.7 122 50.0
AL5G13450 Arabidopsis lyrata HOM05D000070 ORTHO05D006344 3.2e-21 105.5 136 44.1
AT2G03670 Arabidopsis thaliana HOM05D000070 ORTHO05D006344 4.2e-21 105.1 136 44.9
CARHR146000 Cardamine hirsuta HOM05D000070 ORTHO05D006344 4.2e-21 105.1 122 47.5
ATR0177G056 Amborella trichopoda HOM05D000070 ORTHO05D006344 9.4e-21 104.0 74 68.9
BolC7t43916H Brassica oleracea HOM05D005523 ORTHO05D007089 1.2e-20 103.6 136 44.9
FAN22G1193 Fragaria x ananassa HOM05D000070 ORTHO05D006344 4.6e-20 101.7 72 66.7
MBI19_g41556_MAGBIO Magnolia biondii HOM05D000070 ORTHO05D006344 4.6e-20 101.7 84 64.3
C07p34020 Brassica napus HOM05D005523 ORTHO05D007089 6.1e-20 101.3 99 53.5
FvH4_4g29870 Fragaria vesca HOM05D000070 ORTHO05D006344 6.1e-20 101.3 72 65.3
FAN07G2606 Fragaria x ananassa HOM05D000070 ORTHO05D006344 6.1e-20 101.3 72 65.3
FAN12G0985 Fragaria x ananassa HOM05D000070 ORTHO05D006344 6.1e-20 101.3 72 65.3
FAN17G0562 Fragaria x ananassa HOM05D000070 ORTHO05D006344 6.1e-20 101.3 72 65.3
RcHm_v2.0_Chr4g0438121 Rosa chinensis HOM05D000070 ORTHO05D006344 6.1e-20 101.3 72 66.7
Medtr7g088980 Medicago truncatula HOM05D000070 ORTHO05D006344 7.9e-20 100.9 74 66.2
Psat3g081320 Pisum sativum HOM05D000070 ORTHO05D006344 7.9e-20 100.9 74 66.2
BcaC04g21469 Brassica carinata HOM05D000070 ORTHO05D006344 2.3e-19 99.4 124 45.2
C09p31430 Brassica napus HOM05D000070 ORTHO05D006344 2.3e-19 99.4 124 45.2
BolC9t56003H Brassica oleracea HOM05D000070 ORTHO05D006344 2.3e-19 99.4 124 45.2
BcaB07g30661 Brassica carinata HOM05D005523 ORTHO05D007089 3.9e-19 98.6 136 43.4
BcaC06g31164 Brassica carinata HOM05D005523 ORTHO05D006344 3.9e-19 98.6 99 52.5
A09p24520 Brassica napus HOM05D000070 ORTHO05D006344 3.9e-19 98.6 136 41.9
TPR.G22677 Trifolium pratense HOM05D000070 ORTHO05D006344 5.1e-19 98.2 87 57.5
Eucgr.G02441 Eucalyptus grandis HOM05D000070 ORTHO05D006344 8.8e-19 97.4 74 66.2
CDE05G0678 Ceratophyllum demersum HOM05D000070 ORTHO05D006344 4.3e-18 95.1 70 65.7
Rhsim02G0238000 Rhododendron simsii HOM05D000070 ORTHO05D006344 7.4e-18 94.4 53 84.9
SEGI_05577 Sequoiadendron giganteum HOM05D000070 ORTHO05D006344 3.7e-17 92.0 73 64.4
CSS0034873 Camellia sinensis var. sinensis HOM05D000070 ORTHO05D000722 3.1e-16 89.0 52 80.8
Zm00001eb425850 Zea mays HOM05D000070 ORTHO05D006344 1.2e-15 87.0 70 60.0
SMO147G0197 Selaginella moellendorffii HOM05D000070 ORTHO05D006344 1.7e-14 83.2 75 56.0
HPP92_006114 Vanilla planifolia HOM05D000070 ORTHO05D006344 5.0e-14 81.6 70 57.1
Medtr7g088850 Medicago truncatula HOM05D000070 ORTHO05D006344 1.4e-13 80.1 68 58.8
CSS0040639 Camellia sinensis var. sinensis HOM05D000070 ORTHO05D110186 1.2e-12 77.0 45 84.4
CSS0047747 Camellia sinensis var. sinensis HOM05D000070 ORTHO05D110790 1.2e-12 77.0 45 84.4
Mapoly0149s0015 Marchantia polymorpha HOM05D000070 ORTHO05D006344 2.7e-12 75.9 72 51.4
CSS0018364 Camellia sinensis var. sinensis HOM05D000070 ORTHO05D113106 4.7e-12 75.1 45 84.4
CBR_g54905 Chara braunii HOM05D000019 ORTHO05D000002 4.7e-12 75.1 80 46.2
Os04g0498800 Oryza sativa ssp. japonica HOM05D000070 ORTHO05D006344 3.9e-11 72.0 73 52.1
PRCOL_00005146 Prasinoderma coloniale HOM05D000070 ORTHO05D006344 4.4e-10 68.6 67 47.8
AagrBONN_evm.TU.Sc2ySwM_362.1946 Anthoceros agrestis HOM05D000070 ORTHO05D006344 5.7e-10 68.2 62 53.2
Actinidia28631 Actinidia chinensis HOM05D000070 ORTHO05D006344 1.7e-09 66.6 54 64.8
Pp3c21_20700 Physcomitrium patens HOM05D000070 ORTHO05D006344 2.8e-09 65.9 71 46.5
Cre17.g700300 Chlamydomonas reinhardtii HOM05D000070 ORTHO05D006344 5.3e-08 61.6 69 42.0
Aqoxy5G00447 Aquilegia oxysepala HOM05D000070 ORTHO05D007358 5.0e-06 55.1 85 30.6


User provided reference genes

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