Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc03_g11260 Coffea canephora HOM05D004624 ORTHO05D005357 2.0e-68 262.3 132 100.0
Gorai.008G288400 Gossypium raimondii HOM05D004624 ORTHO05D005357 3.3e-23 112.1 69 81.2
Glyma.03G068900 Glycine max HOM05D004624 ORTHO05D005357 4.4e-23 111.7 81 75.3
ClCG11G007400 Citrullus lanatus HOM05D004624 ORTHO05D005357 5.7e-23 111.3 59 86.4
vmacro08998 Vaccinium macrocarpon HOM05D004624 ORTHO05D005357 7.4e-23 110.9 74 78.4
Gohir.A07G114500 Gossypium hirsutum HOM05D004624 ORTHO05D005357 9.7e-23 110.5 69 79.7
Gohir.D12G268300 Gossypium hirsutum HOM05D004624 ORTHO05D005357 9.7e-23 110.5 69 79.7
Gorai.001G127500 Gossypium raimondii HOM05D004624 ORTHO05D005357 9.7e-23 110.5 69 78.3
Medtr2g008230 Medicago truncatula HOM05D004624 ORTHO05D005357 9.7e-23 110.5 103 61.2
Gohir.D07G118600 Gossypium hirsutum HOM05D004624 ORTHO05D005357 1.3e-22 110.2 69 78.3
Nitab4.5_0002193g0050 Nicotiana tabacum HOM05D004624 ORTHO05D005357 1.3e-22 110.2 77 75.3
vmacro17426 Vaccinium macrocarpon HOM05D004624 ORTHO05D005357 1.7e-22 109.8 78 74.4
COL.COLO4_05868 Corchorus olitorius HOM05D004624 ORTHO05D005357 2.2e-22 109.4 69 79.7
Glyma.01G100100 Glycine max HOM05D004624 ORTHO05D005357 2.2e-22 109.4 74 79.7
CiPaw.10G042300 Carya illinoinensis HOM05D004624 ORTHO05D005357 2.8e-22 109.0 78 74.4
Duzib205G0906 Durio zibethinus HOM05D004624 ORTHO05D005357 2.8e-22 109.0 69 79.7
Psat0s1206g0080 Pisum sativum HOM05D004624 ORTHO05D005357 2.8e-22 109.0 76 73.7
PGR142G2854 Punica granatum HOM05D004624 ORTHO05D005357 2.8e-22 109.0 74 75.7
TPR.G12609 Trifolium pratense HOM05D004624 ORTHO05D005357 2.8e-22 109.0 75 73.3
Medtr4g124060 Medicago truncatula HOM05D004624 ORTHO05D005357 3.7e-22 108.6 76 73.7
Ciclev10010500m.g Citrus clementina HOM05D004624 ORTHO05D005357 4.8e-22 108.2 75 73.3
Cpa.g.sc116.84 Carica papaya HOM05D004624 ORTHO05D005357 6.3e-22 107.8 68 80.9
Thecc.03G049000 Theobroma cacao HOM05D004624 ORTHO05D005357 6.3e-22 107.8 69 78.3
Cfa019982 Carpinus fangiana HOM05D004624 ORTHO05D005357 1.1e-21 107.1 76 72.4
Haze_02997 Corylus avellana HOM05D004624 ORTHO05D005357 1.1e-21 107.1 81 67.9
Nitab4.5_0006270g0030 Nicotiana tabacum HOM05D004624 ORTHO05D005357 1.1e-21 107.1 77 74.0
Rhsim13G0121200 Rhododendron simsii HOM05D004624 ORTHO05D005357 1.1e-21 107.1 71 76.1
TPR.G16719 Trifolium pratense HOM05D004624 ORTHO05D005357 1.1e-21 107.1 75 72.0
Lalb_Chr19g0128161 Lupinus albus HOM05D004624 ORTHO05D005357 1.4e-21 106.7 78 76.9
Nitab4.5_0000021g0900 Nicotiana tabacum HOM05D004624 ORTHO05D005357 1.4e-21 106.7 82 68.3
PGSC0003DMG400026480 Solanum tuberosum HOM05D004624 ORTHO05D005357 1.4e-21 106.7 81 70.4
Lj1g0004051 Lotus japonicus HOM05D004624 ORTHO05D005357 1.8e-21 106.3 78 75.6
Nitab4.5_0000645g0040 Nicotiana tabacum HOM05D004624 ORTHO05D005357 1.8e-21 106.3 81 72.8
Atru.chr12.1276 Acer truncatum HOM05D004624 ORTHO05D005357 2.4e-21 105.9 80 70.0
CSS0035187 Camellia sinensis var. sinensis HOM05D004624 ORTHO05D005357 2.4e-21 105.9 71 76.1
Haze_20251 Corylus avellana HOM05D004624 ORTHO05D005357 2.4e-21 105.9 76 71.1
Potri.006G035900 Populus trichocarpa HOM05D004624 ORTHO05D005357 2.4e-21 105.9 77 72.7
QL07p012089 Quercus lobata HOM05D004624 ORTHO05D005357 2.4e-21 105.9 58 87.9
TWI53G0657 Tripterygium wilfordii HOM05D004624 ORTHO05D005357 2.4e-21 105.9 78 73.1
CSS0026932 Camellia sinensis var. sinensis HOM05D004624 ORTHO05D005357 3.1e-21 105.5 71 74.6
Hma1.2p1_0223F.1_g094210 Hydrangea macrophylla HOM05D004624 ORTHO05D005357 3.1e-21 105.5 58 87.9
Sc13g0000990 Simmondsia chinensis HOM05D004624 ORTHO05D005357 3.1e-21 105.5 81 72.8
CSS0023921 Camellia sinensis var. sinensis HOM05D004624 ORTHO05D005357 4.1e-21 105.1 71 74.6
Migut.J01633 Erythranthe guttata HOM05D004624 ORTHO05D005357 4.1e-21 105.1 75 74.7
Peaxi162Scf00516g00035 Petunia axillaris HOM05D004624 ORTHO05D005357 4.1e-21 105.1 81 70.4
Phvul.001G120800 Phaseolus vulgaris HOM05D004624 ORTHO05D005357 4.1e-21 105.1 81 70.4
CAN.G65.122 Capsicum annuum HOM05D004624 ORTHO05D005357 5.3e-21 104.8 77 74.0
Nn7g37680 Nelumbo nucifera HOM05D004624 ORTHO05D005357 5.3e-21 104.8 56 91.1
Ah.13g077180 Amaranthus hybridus HOM05D004624 ORTHO05D005357 6.9e-21 104.4 69 72.5
Sabra06G0024000 Salix brachista HOM05D004624 ORTHO05D005357 6.9e-21 104.4 77 68.8
Sopen03g028160 Solanum pennellii HOM05D004624 ORTHO05D005357 9.1e-21 104.0 81 67.9
GSVIVG01021751001 Vitis vinifera HOM05D004624 ORTHO05D005357 9.1e-21 104.0 73 68.5
GSVIVG01025772001 Vitis vinifera HOM05D004624 ORTHO05D005357 9.1e-21 104.0 78 70.5
CANSAT78G0048 Cannabis sativa HOM05D004624 ORTHO05D005357 1.2e-20 103.6 64 78.1
CANSAT78G2147 Cannabis sativa HOM05D004624 ORTHO05D005357 1.2e-20 103.6 64 78.1
Ca_07684_v3 Cicer arietinum L. HOM05D004624 ORTHO05D005357 1.2e-20 103.6 62 82.3
Potri.016G034200 Populus trichocarpa HOM05D004624 ORTHO05D005357 1.2e-20 103.6 74 68.9
Rhsim04G0113600 Rhododendron simsii HOM05D004624 ORTHO05D005357 1.2e-20 103.6 76 71.1
Sopen06g029060 Solanum pennellii HOM05D004624 ORTHO05D005357 1.2e-20 103.6 81 71.6
TAR633G0121 Trochodendron aralioides HOM05D004624 ORTHO05D005357 1.2e-20 103.6 80 67.5
Sabra16G0036900 Salix brachista HOM05D004624 ORTHO05D005357 1.5e-20 103.2 76 71.1
Lj4g0019310 Lotus japonicus HOM05D004624 ORTHO05D005357 2.0e-20 102.8 78 73.1
Nitab4.5_0006185g0060 Nicotiana tabacum HOM05D004624 ORTHO05D005357 2.0e-20 102.8 75 69.3
TWI74G0338 Tripterygium wilfordii HOM05D004624 ORTHO05D005357 2.0e-20 102.8 56 89.3
Cfa010947 Carpinus fangiana HOM05D004624 ORTHO05D005357 2.6e-20 102.4 75 73.3
Manes.15G024800 Manihot esculenta HOM05D004624 ORTHO05D005357 2.6e-20 102.4 78 69.2
Carub.0006s2800 Capsella rubella HOM05D004624 ORTHO05D005357 3.4e-20 102.1 69 72.5
CDE05G2943 Ceratophyllum demersum HOM05D004624 ORTHO05D005357 3.4e-20 102.1 75 73.3
MD03G1113900 Malus domestica HOM05D004624 ORTHO05D005357 3.4e-20 102.1 61 82.0
AL6G43100 Arabidopsis lyrata HOM05D004624 ORTHO05D005357 4.5e-20 101.7 74 70.3
AT4G09550 Arabidopsis thaliana HOM05D004624 ORTHO05D005357 4.5e-20 101.7 74 70.3
Dinv15634 Davidia involucrata HOM05D004624 ORTHO05D005357 4.5e-20 101.7 59 83.1
Sp6g08080 Schrenkiella parvula HOM05D004624 ORTHO05D005357 4.5e-20 101.7 69 73.9
Sed0025002 Sechium edule HOM05D004624 ORTHO05D005357 4.5e-20 101.7 56 85.7
arahy.Tifrunner.gnm1.ann1.QE2DSJ Arachis hypogaea HOM05D004624 ORTHO05D005357 5.9e-20 101.3 73 75.3
DCAR_020589 Daucus carota HOM05D004624 ORTHO05D005357 5.9e-20 101.3 62 80.6
Aqoxy3G00212 Aquilegia oxysepala HOM05D004624 ORTHO05D005357 7.7e-20 100.9 77 70.1
arahy.Tifrunner.gnm1.ann1.Q8D3CZ Arachis hypogaea HOM05D004624 ORTHO05D005357 7.7e-20 100.9 78 70.5
BcaB03g15084 Brassica carinata HOM05D004624 ORTHO05D005357 7.7e-20 100.9 71 74.6
MELO3C008583.2 Cucumis melo HOM05D004624 ORTHO05D005357 7.7e-20 100.9 69 73.9
Thhalv10019414m.g Eutrema salsugineum HOM05D004624 ORTHO05D005357 7.7e-20 100.9 62 82.3
Nitab4.5_0003447g0020 Nicotiana tabacum HOM05D004624 ORTHO05D005357 7.7e-20 100.9 68 75.0
Prupe.8G075600 Prunus persica HOM05D004624 ORTHO05D005357 7.7e-20 100.9 61 82.0
SHI11762 Sapria himalayana HOM05D004624 ORTHO05D005357 7.7e-20 100.9 79 67.1
THA.LOC109116606 Tarenaya hassleriana HOM05D004624 ORTHO05D005357 7.7e-20 100.9 59 84.7
Actinidia05484 Actinidia chinensis HOM05D004624 ORTHO05D005357 1.0e-19 100.5 63 81.0
CAN.G732.25 Capsicum annuum HOM05D004624 ORTHO05D005357 1.0e-19 100.5 56 82.1
CARHR260420 Cardamine hirsuta HOM05D004624 ORTHO05D005357 1.0e-19 100.5 62 77.4
AUR62018375 Chenopodium quinoa HOM05D004624 ORTHO05D005357 1.0e-19 100.5 69 72.5
CsaV3_2G010390 Cucumis sativus L. HOM05D004624 ORTHO05D005357 1.0e-19 100.5 58 82.8
Peaxi162Scf00815g00038 Petunia axillaris HOM05D004624 ORTHO05D005357 1.0e-19 100.5 72 69.4
AUR62030290 Chenopodium quinoa HOM05D004624 ORTHO05D005357 1.3e-19 100.1 66 74.2
BraA07t30607Z Brassica rapa HOM05D004624 ORTHO05D005357 1.7e-19 99.8 66 77.3
BcaB03g15728 Brassica carinata HOM05D004624 ORTHO05D005357 2.2e-19 99.4 59 83.1
C06p33840 Brassica napus HOM05D004624 ORTHO05D005357 2.2e-19 99.4 59 83.1
Migut.J01336 Erythranthe guttata HOM05D004624 ORTHO05D005357 2.2e-19 99.4 56 87.5
Eucgr.K01650 Eucalyptus grandis HOM05D004624 ORTHO05D005357 2.2e-19 99.4 58 82.8
Lalb_Chr19g0128151 Lupinus albus HOM05D004624 ORTHO05D005357 2.2e-19 99.4 78 69.2
Sabra16G0054100 Salix brachista HOM05D004624 ORTHO05D005357 2.2e-19 99.4 69 71.0
FvH4_5g29300 Fragaria vesca HOM05D004624 ORTHO05D005357 3.8e-19 98.6 81 67.9
FAN13G0550 Fragaria x ananassa HOM05D004624 ORTHO05D005357 3.8e-19 98.6 81 67.9
FAN18G4513 Fragaria x ananassa HOM05D004624 ORTHO05D005357 3.8e-19 98.6 81 67.9
PSO541G4755 Papaver somniferum HOM05D004624 ORTHO05D005357 3.8e-19 98.6 81 65.4
PSO675G0528 Papaver somniferum HOM05D004624 ORTHO05D005357 3.8e-19 98.6 81 65.4
Sp5g28970 Schrenkiella parvula HOM05D004624 ORTHO05D005357 3.8e-19 98.6 64 78.1
Manes.10G062600 Manihot esculenta HOM05D004624 ORTHO05D005357 5.0e-19 98.2 81 66.7
BcaC08g46798 Brassica carinata HOM05D004624 ORTHO05D005357 6.5e-19 97.8 59 81.4
C06p47930 Brassica napus HOM05D004624 ORTHO05D005357 6.5e-19 97.8 59 81.4
BolC6t39828H Brassica oleracea HOM05D004624 ORTHO05D005357 6.5e-19 97.8 59 81.4
BraA07t31513Z Brassica rapa HOM05D004624 ORTHO05D005357 6.5e-19 97.8 59 81.4
DCAR_028787 Daucus carota HOM05D004624 ORTHO05D005357 6.5e-19 97.8 58 81.0
Migut.J01335 Erythranthe guttata HOM05D004624 ORTHO05D005357 6.5e-19 97.8 56 85.7
MBI17_g08328_MAGBIO Magnolia biondii HOM05D004624 ORTHO05D005357 6.5e-19 97.8 57 82.5
RcHm_v2.0_Chr7g0222161 Rosa chinensis HOM05D004624 ORTHO05D005357 6.5e-19 97.8 56 85.7
BcaC08g45622 Brassica carinata HOM05D004624 ORTHO05D005357 1.1e-18 97.1 59 81.4
Thecc.05G198400 Theobroma cacao HOM05D004624 ORTHO05D005357 1.1e-18 97.1 75 69.3
COL.COLO4_37401 Corchorus olitorius HOM05D004624 ORTHO05D005357 1.4e-18 96.7 77 66.2
PSO063G3723 Papaver somniferum HOM05D004624 ORTHO05D005357 1.9e-18 96.3 62 75.8
FAN08G1983 Fragaria x ananassa HOM05D004624 ORTHO05D005357 2.5e-18 95.9 85 64.7
ECA248G3900 Erigeron canadensis HOM05D004624 ORTHO05D005357 3.2e-18 95.5 74 67.6
Aqoxy3G02929 Aquilegia oxysepala HOM05D004624 ORTHO05D005357 5.5e-18 94.7 58 81.0
ECA238G3634 Erigeron canadensis HOM05D000185 ORTHO05D000105 5.5e-18 94.7 81 64.2
CARHR066880 Cardamine hirsuta HOM05D004624 ORTHO05D005357 7.2e-18 94.4 66 69.7
AL2G33600 Arabidopsis lyrata HOM05D004624 ORTHO05D005357 9.4e-18 94.0 56 82.1
AT1G73790 Arabidopsis thaliana HOM05D004624 ORTHO05D005357 9.4e-18 94.0 56 82.1
Carub.0002s2054 Capsella rubella HOM05D004624 ORTHO05D005357 9.4e-18 94.0 56 82.1
QL04p073121 Quercus lobata HOM05D004624 ORTHO05D005357 9.4e-18 94.0 55 81.8
RcHm_v2.0_Chr1g0330241 Rosa chinensis HOM05D004624 ORTHO05D005357 9.4e-18 94.0 61 77.0
Aa31LG4G10460 Aethionema arabicum HOM05D004624 ORTHO05D005357 1.6e-17 93.2 60 73.3
Cpa.g.sc883.1 Carica papaya HOM05D004624 ORTHO05D005357 2.1e-17 92.8 58 77.6
HanXRQChr11g0352301 Helianthus annuus HOM05D004624 ORTHO05D005357 2.1e-17 92.8 56 80.4
unitig_746.g26892 Utricularia gibba HOM05D004624 ORTHO05D005357 2.3e-16 89.4 56 78.6
TAR627G0533 Trochodendron aralioides HOM05D004624 ORTHO05D005357 1.5e-15 86.7 77 63.6
Pp3c13_4560 Physcomitrium patens HOM05D004624 ORTHO05D005357 9.7e-15 84.0 61 72.1
EL10Ac4g09929 Beta vulgaris HOM05D004624 ORTHO05D005357 2.8e-14 82.4 55 70.9
Zm00001eb062930 Zea mays HOM05D004624 ORTHO05D005357 2.8e-14 82.4 81 55.6
Os03g0435900 Oryza sativa ssp. japonica HOM05D004624 ORTHO05D005357 1.8e-13 79.7 72 55.6
Os03g0824000 Oryza sativa ssp. japonica HOM05D004624 ORTHO05D005357 1.8e-13 79.7 80 55.0
Os11g0368172 Oryza sativa ssp. japonica HOM05D004624 ORTHO05D005357 1.8e-13 79.7 72 55.6
Pp3c12_8260 Physcomitrium patens HOM05D004624 ORTHO05D005357 3.1e-13 79.0 58 72.4
PRCOL_00005147 Prasinoderma coloniale HOM05D004624 ORTHO05D005357 3.1e-13 79.0 58 69.0
AagrBONN_evm.TU.Sc2ySwM_340.447 Anthoceros agrestis HOM05D004624 ORTHO05D005357 4.1e-13 78.6 58 67.2
MD11G1133700 Malus domestica HOM05D004624 ORTHO05D005357 1.2e-12 77.0 43 88.4
FvH4_2g13790 Fragaria vesca HOM05D004624 ORTHO05D005357 1.6e-12 76.6 58 65.5
FAN24G0569 Fragaria x ananassa HOM05D004624 ORTHO05D005357 1.6e-12 76.6 58 65.5
SMO172G0211 Selaginella moellendorffii HOM05D004624 ORTHO05D005357 2.0e-12 76.3 51 74.5
CBR_g23420 Chara braunii HOM05D004624 ORTHO05D005357 4.5e-12 75.1 58 63.8
Atru.chr12.1164 Acer truncatum HOM05D004624 ORTHO05D005357 7.7e-12 74.3 57 66.7
SalBow6G5026 Salvia bowleyana HOM05D004624 ORTHO05D005357 2.2e-11 72.8 51 74.5
Solyc03g097400.1 Solanum lycopersicum HOM05D004624 ORTHO05D005357 2.2e-11 72.8 63 65.1
HPP92_018529 Vanilla planifolia HOM05D004624 ORTHO05D005357 3.8e-11 72.0 74 48.6
Mapoly0109s0047 Marchantia polymorpha HOM05D004624 ORTHO05D005357 8.5e-11 70.9 68 57.4
MCO02G029 Micromonas commoda HOM05D004624 ORTHO05D005357 1.5e-10 70.1 58 60.3
Solyc06g072690.3 Solanum lycopersicum HOM05D004624 ORTHO05D005357 1.9e-10 69.7 59 67.8
Cre14.g610000 Chlamydomonas reinhardtii HOM05D004624 ORTHO05D005357 3.3e-07 58.9 57 52.6
Lsat_1_v5_gn_1_43120 Lactuca sativa HOM05D004624 ORTHO05D005357 1.3e-06 57.0 51 60.8
Glyma.03G125300 Glycine max HOM05D004624 ORTHO05D005357 2.8e-06 55.8 35 77.1


User provided reference genes

Program Settings