Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc03_g11190 Coffea canephora HOM05D005523 ORTHO05D007089 0.0e+00 1159.4 571 100.0
Cc11_g11910 Coffea canephora HOM05D005523 ORTHO05D007089 1.2e-306 1055.8 529 98.9
Migut.L01183 Erythranthe guttata HOM05D005523 ORTHO05D007089 6.1e-215 751.1 530 70.0
Peaxi162Scf00175g00035 Petunia axillaris HOM05D005523 ORTHO05D007089 4.5e-210 734.9 537 69.3
SalBow2G2481 Salvia bowleyana HOM05D005523 ORTHO05D007089 2.3e-209 732.6 564 66.3
CAN.G707.6 Capsicum annuum HOM05D005523 ORTHO05D007089 7.2e-208 727.6 546 67.6
GSVIVG01012228001 Vitis vinifera HOM05D005523 ORTHO05D007089 7.2e-208 727.6 544 66.4
Solyc05g012200.3 Solanum lycopersicum HOM05D005523 ORTHO05D007089 1.6e-207 726.5 546 67.2
Sopen05g007030 Solanum pennellii HOM05D005523 ORTHO05D007089 6.1e-207 724.5 546 67.6
QL03p074443 Quercus lobata HOM05D005523 ORTHO05D007089 6.8e-206 721.1 551 66.8
PGSC0003DMG400028314 Solanum tuberosum HOM05D005523 ORTHO05D007089 2.0e-205 719.5 546 66.5
Thecc.02G329500 Theobroma cacao HOM05D005523 ORTHO05D007089 5.7e-205 718.0 535 67.7
QL03p074024 Quercus lobata HOM05D005523 ORTHO05D007089 1.3e-204 716.8 551 66.4
CANSAT64G1787 Cannabis sativa HOM05D005523 ORTHO05D007089 7.0e-203 711.1 542 65.9
TWI79G0260 Tripterygium wilfordii HOM05D005523 ORTHO05D007089 3.5e-202 708.8 535 66.5
Nitab4.5_0007061g0020 Nicotiana tabacum HOM05D005523 ORTHO05D007089 8.6e-201 704.1 544 66.2
COL.COLO4_27873 Corchorus olitorius HOM05D005523 ORTHO05D007089 9.5e-200 700.7 529 66.7
CiPaw.05G124500 Carya illinoinensis HOM05D005523 ORTHO05D007089 1.2e-199 700.3 548 65.0
PSO478G5042 Papaver somniferum HOM05D005523 ORTHO05D007089 1.2e-199 700.3 516 67.1
Rhsim02G0238300 Rhododendron simsii HOM05D005523 ORTHO05D007089 3.6e-199 698.7 581 62.8
Oeu021803.1 Olea europaea HOM05D005523 ORTHO05D007089 1.4e-198 696.8 511 67.9
Glyma.20G025400 Glycine max HOM05D005523 ORTHO05D007089 1.2e-197 693.7 550 62.7
PSO017G3752 Papaver somniferum HOM05D005523 ORTHO05D007089 2.0e-197 693.0 516 66.3
DCAR_026677 Daucus carota HOM05D005523 ORTHO05D007089 4.4e-197 691.8 542 66.1
MD13G1061700 Malus domestica HOM05D005523 ORTHO05D007089 2.2e-196 689.5 544 65.3
Ciclev10033727m.g Citrus clementina HOM05D005523 ORTHO05D007089 2.9e-196 689.1 545 64.4
Potri.010G157700 Populus trichocarpa HOM05D005523 ORTHO05D007089 2.9e-196 689.1 543 64.5
Lj4g0005251 Lotus japonicus HOM05D005523 ORTHO05D007089 3.7e-196 688.7 544 64.3
Lalb_Chr05g0219911 Lupinus albus HOM05D005523 ORTHO05D007089 3.2e-195 685.6 544 64.2
Sed0024899 Sechium edule HOM05D005523 ORTHO05D007089 7.0e-195 684.5 534 64.8
Atru.chr11.1618 Acer truncatum HOM05D005523 ORTHO05D007089 1.6e-194 683.3 546 64.8
Haze_11899 Corylus avellana HOM05D005523 ORTHO05D007089 1.6e-194 683.3 534 65.7
Gohir.D12G164000 Gossypium hirsutum HOM05D005523 ORTHO05D007089 2.7e-194 682.6 532 65.2
Prupe.1G288300 Prunus persica HOM05D005523 ORTHO05D007089 3.5e-194 682.2 549 64.3
Gorai.008G176600 Gossypium raimondii HOM05D005523 ORTHO05D007089 1.7e-193 679.9 532 65.0
Psat7g133840 Pisum sativum HOM05D005523 ORTHO05D007089 2.3e-193 679.5 590 60.0
MELO3C012156.2 Cucumis melo HOM05D005523 ORTHO05D007089 5.0e-193 678.3 553 61.8
EL10Ac6g15006 Beta vulgaris HOM05D005523 ORTHO05D007089 1.1e-192 677.2 542 62.5
MD16G1060200 Malus domestica HOM05D005523 ORTHO05D007089 1.1e-192 677.2 537 65.0
Lsat_1_v5_gn_4_11761 Lactuca sativa HOM05D005523 ORTHO05D007089 1.5e-192 676.8 517 65.8
Medtr4g083180 Medicago truncatula HOM05D005523 ORTHO05D007089 1.5e-192 676.8 549 63.6
RcHm_v2.0_Chr4g0438141 Rosa chinensis HOM05D005523 ORTHO05D007089 2.5e-192 676.0 546 64.5
TPR.G34024 Trifolium pratense HOM05D005523 ORTHO05D007089 2.5e-192 676.0 547 64.2
CsaV3_5G033360 Cucumis sativus L. HOM05D005523 ORTHO05D007089 3.3e-192 675.6 541 62.5
HanXRQChr17g0552771 Helianthus annuus HOM05D005523 ORTHO05D007089 4.3e-192 675.2 522 66.1
Phvul.002G101900 Phaseolus vulgaris HOM05D005523 ORTHO05D007089 4.3e-192 675.2 550 62.5
arahy.Tifrunner.gnm1.ann1.1A68HA Arachis hypogaea HOM05D005523 ORTHO05D007089 7.3e-192 674.5 528 63.6
Ca_18798_v3 Cicer arietinum L. HOM05D005523 ORTHO05D007089 7.3e-192 674.5 550 63.3
FvH4_4g29880 Fragaria vesca HOM05D005523 ORTHO05D007089 3.6e-191 672.2 544 64.2
AUR62003091 Chenopodium quinoa HOM05D005523 ORTHO05D007089 6.2e-191 671.4 542 61.6
FAN17G1793 Fragaria x ananassa HOM05D005523 ORTHO05D007089 6.2e-191 671.4 545 63.9
FAN07G2138 Fragaria x ananassa HOM05D005523 ORTHO05D007089 3.1e-190 669.1 545 63.9
Duzib251G0966 Durio zibethinus HOM05D005523 ORTHO05D007089 6.8e-190 667.9 541 63.8
FAN22G0589 Fragaria x ananassa HOM05D005523 ORTHO05D007089 8.9e-190 667.5 545 63.3
Nn4g23450 Nelumbo nucifera HOM05D005523 ORTHO05D007089 1.5e-189 666.8 579 60.3
Hund25171 Selenicereus undatus HOM05D005523 ORTHO05D007089 7.5e-189 664.5 535 64.3
arahy.Tifrunner.gnm1.ann1.5T11RT Arachis hypogaea HOM05D005523 ORTHO05D007089 1.3e-188 663.7 554 60.6
ECA234G2689 Erigeron canadensis HOM05D005523 ORTHO05D007089 3.7e-188 662.1 518 65.8
FAN12G2921 Fragaria x ananassa HOM05D005523 ORTHO05D007089 5.4e-187 658.3 580 60.0
Aqoxy3G00520 Aquilegia oxysepala HOM05D005523 ORTHO05D007089 2.1e-186 656.4 575 59.3
Nitab4.5_0000231g0170 Nicotiana tabacum HOM05D005523 ORTHO05D007089 1.3e-185 653.7 523 65.0
THA.LOC104805203 Tarenaya hassleriana HOM05D005523 ORTHO05D007089 5.6e-184 648.3 515 64.7
CARHR145990 Cardamine hirsuta HOM05D005523 ORTHO05D007089 9.5e-184 647.5 516 64.9
SGA_v2.0_scaffold16G07795 Striga asiatica HOM05D005523 ORTHO05D007089 9.5e-184 647.5 539 60.9
AL5G13440 Arabidopsis lyrata HOM05D005523 ORTHO05D007089 3.6e-183 645.6 532 63.2
Manes.05G109800 Manihot esculenta HOM05D005523 ORTHO05D007089 3.6e-183 645.6 491 65.2
Cfa008872 Carpinus fangiana HOM05D005523 ORTHO05D007089 6.2e-183 644.8 514 64.2
vmacro10430 Vaccinium macrocarpon HOM05D005523 ORTHO05D007089 6.2e-183 644.8 538 63.0
Carub.0005s0279 Capsella rubella HOM05D005523 ORTHO05D007089 1.8e-182 643.3 523 64.2
BolC7t43916H Brassica oleracea HOM05D005523 ORTHO05D007089 4.0e-182 642.1 525 64.4
Sp2g14490 Schrenkiella parvula HOM05D005523 ORTHO05D007089 4.0e-182 642.1 532 62.8
A06p43010 Brassica napus HOM05D005523 ORTHO05D007089 5.2e-182 641.7 522 63.8
AT2G03667 Arabidopsis thaliana HOM05D005523 ORTHO05D007089 8.9e-182 641.0 532 62.8
C07p34020 Brassica napus HOM05D005523 ORTHO05D007089 2.0e-181 639.8 523 63.7
Thhalv10003838m.g Eutrema salsugineum HOM05D005523 ORTHO05D007089 2.6e-181 639.4 529 63.3
Rhsim09G0126700 Rhododendron simsii HOM05D005523 ORTHO05D007089 1.4e-179 633.6 542 62.5
AUR62007908 Chenopodium quinoa HOM05D005523 ORTHO05D007089 4.1e-179 632.1 521 61.2
Lj6A778G61 Lonicera japonica HOM05D005523 ORTHO05D007089 6.0e-178 628.2 591 57.0
Aa31LG2G7010 Aethionema arabicum HOM05D005523 ORTHO05D007089 3.0e-177 625.9 503 63.6
PGR119G1690 Punica granatum HOM05D005523 ORTHO05D007089 8.1e-175 617.8 516 63.0
Sc14g0007970 Simmondsia chinensis HOM05D005523 ORTHO05D007089 2.0e-173 613.2 470 63.8
HPP92_001825 Vanilla planifolia HOM05D005523 ORTHO05D007089 2.9e-172 609.4 549 59.4
BcaB07g30661 Brassica carinata HOM05D005523 ORTHO05D007089 4.9e-172 608.6 537 60.0
unitig_26.g10286 Utricularia gibba HOM05D005523 ORTHO05D007089 3.9e-169 599.0 524 59.9
CSS0034602 Camellia sinensis var. sinensis HOM05D005523 ORTHO05D007089 2.4e-158 563.1 418 68.9
Zm00001eb029510 Zea mays HOM05D005523 ORTHO05D007089 5.3e-158 562.0 553 55.0
TAR374G1461 Trochodendron aralioides HOM05D005523 ORTHO05D007089 3.0e-153 546.2 442 63.3
Eucgr.G02442 Eucalyptus grandis HOM05D005523 ORTHO05D007089 1.9e-152 543.5 417 66.7
Pp3c13_5080 Physcomitrium patens HOM05D005523 ORTHO05D007089 4.3e-152 542.3 606 49.7
AagrBONN_evm.TU.Sc2ySwM_228.676 Anthoceros agrestis HOM05D005523 ORTHO05D007089 1.9e-147 526.9 564 52.5
SMO364G0955 Selaginella moellendorffii HOM05D005523 ORTHO05D007089 1.3e-143 514.2 526 52.3
Gohir.A12G160700 Gossypium hirsutum HOM05D005523 ORTHO05D007089 1.1e-136 491.1 385 66.2
Mapoly0013s0146 Marchantia polymorpha HOM05D005523 ORTHO05D007089 1.1e-120 438.0 478 49.6
Oeu021804.1 Olea europaea HOM05D005523 ORTHO05D007089 2.6e-120 436.8 354 61.6
VMungo0251G0731 Vigna mungo HOM05D005523 ORTHO05D007089 1.7e-119 434.1 291 73.5
MBI19_g25293_MAGBIO Magnolia biondii HOM05D005523 ORTHO05D007089 2.1e-114 417.2 458 50.7
Actinidia28650 Actinidia chinensis HOM05D005523 ORTHO05D007089 4.8e-111 406.0 445 53.9
Actinidia36738 Actinidia chinensis HOM05D005523 ORTHO05D007089 1.5e-96 357.8 253 74.3
CDE10G0904 Ceratophyllum demersum HOM05D005523 ORTHO05D007089 2.4e-94 350.5 258 69.8
ATR0177G042 Amborella trichopoda HOM05D005523 ORTHO05D007089 1.9e-91 340.9 353 52.4
MBI19_g44450_MAGBIO Magnolia biondii HOM05D005523 ORTHO05D007089 1.4e-86 324.7 250 68.4
BcaC04g21469 Brassica carinata HOM05D000070 ORTHO05D006344 7.8e-85 318.9 388 49.7
BcaC06g31164 Brassica carinata HOM05D005523 ORTHO05D006344 8.6e-84 315.5 211 75.4
PRCOL_00003408 Prasinoderma coloniale HOM05D005523 ORTHO05D007089 2.1e-82 310.8 556 35.6
CBR_g50115 Chara braunii HOM05D005523 ORTHO05D007089 1.2e-80 305.1 407 42.5
ClCG05G023660 Citrullus lanatus HOM05D005523 ORTHO05D007089 8.3e-79 298.9 331 48.0
Actinidia14169 Actinidia chinensis HOM05D005523 ORTHO05D007089 9.2e-78 295.4 302 56.0
BolC9t56002H Brassica oleracea HOM05D005523 ORTHO05D007089 6.0e-77 292.7 379 46.4
C09p31430 Brassica napus HOM05D000070 ORTHO05D006344 3.0e-76 290.4 346 49.7
Actinidia12916 Actinidia chinensis HOM05D005523 ORTHO05D007089 8.1e-74 282.3 464 41.2
Lsat_1_v5_gn_7_112061 Lactuca sativa HOM05D005523 ORTHO05D007089 9.8e-72 275.4 315 53.7
RcHm_v2.0_Chr7g0182531 Rosa chinensis HOM05D005523 ORTHO05D007089 4.9e-71 273.1 158 84.2
Lsat_1_v5_gn_5_70240 Lactuca sativa HOM05D005523 ORTHO05D007089 4.1e-70 270.0 178 76.4
Lsat_1_v5_gn_5_143020 Lactuca sativa HOM05D005523 ORTHO05D007089 6.0e-69 266.2 178 73.0
Cre07.g321050 Chlamydomonas reinhardtii HOM05D005523 ORTHO05D007089 4.4e-64 250.0 361 41.3
Cpa.g.sc1.134 Carica papaya HOM05D005523 ORTHO05D007089 5.4e-62 243.0 150 76.7
VMungo0251G1186 Vigna mungo HOM05D005523 ORTHO05D007089 1.0e-60 238.8 275 45.5
CDE10G0400 Ceratophyllum demersum HOM05D005523 ORTHO05D007089 1.9e-51 208.0 203 49.8
BcaB03g12091 Brassica carinata HOM05D005523 ORTHO05D007089 6.9e-49 199.5 128 76.6
CSS0024141 Camellia sinensis var. sinensis HOM05D005523 ORTHO05D007089 2.4e-38 164.5 110 69.1
CSS0004547 Camellia sinensis var. sinensis HOM05D005523 ORTHO05D007089 9.6e-35 152.5 110 66.4
Cpa.g.sc1.132 Carica papaya HOM05D005523 ORTHO05D007089 3.1e-33 147.5 302 34.1
CSS0023178 Camellia sinensis var. sinensis HOM05D005523 ORTHO05D007089 3.2e-30 137.5 110 60.0
SEGI_10872 Sequoiadendron giganteum HOM05D005523 ORTHO05D007089 3.7e-26 124.0 101 54.5
Lsat_1_v5_gn_7_82480 Lactuca sativa HOM05D005523 ORTHO05D007089 4.1e-25 120.6 146 52.7
CSS0028074 Camellia sinensis var. sinensis HOM05D005523 ORTHO05D026295 7.2e-22 109.8 110 50.0
Os12g0574900 Oryza sativa ssp. japonica HOM05D005523 ORTHO05D007089 8.2e-18 96.3 93 49.5
TAR374G1311 Trochodendron aralioides HOM05D005523 ORTHO05D007089 9.1e-17 92.8 71 62.0
CAN.G553.8 Capsicum annuum HOM05D001766 ORTHO05D043404 4.5e-16 90.5 82 53.7
HanXRQChr15g0470871 Helianthus annuus HOM05D005523 ORTHO05D007089 7.7e-16 89.7 82 52.4
EL10Ac6g15009 Beta vulgaris HOM05D005523 ORTHO05D007089 2.7e-13 81.3 87 42.5
Cpa.g.sc1.135 Carica papaya HOM05D005523 ORTHO05D007089 2.7e-13 81.3 56 78.6
CAN.G602.9 Capsicum annuum HOM05D005523 ORTHO05D007089 1.5e-11 75.5 51 66.7
CiPaw.04G124200 Carya illinoinensis HOM05D005523 ORTHO05D007089 2.0e-11 75.1 72 51.4
Actinidia36737 Actinidia chinensis HOM05D005523 ORTHO05D007089 7.2e-06 56.6 72 47.2


User provided reference genes

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